Protein–RNA interactions for Protein: Q9Y3X0

CCDC9, Coiled-coil domain-containing protein 9, humanhuman

Known RBP Predictions only

Length 531 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC9Q9Y3X0 MDM2-221ENST00000517852 393 ntTSL 1 (best) BASIC4.88□□□□□ -1.63
CCDC9Q9Y3X0 AL359232.1-201ENST00000556361 442 ntTSL 3 BASIC4.88□□□□□ -1.63
CCDC9Q9Y3X0 MIR548S-201ENST00000581352 82 ntBASIC4.88□□□□□ -1.63
CCDC9Q9Y3X0 MIR5692C1-201ENST00000585309 91 ntBASIC4.88□□□□□ -1.63
CCDC9Q9Y3X0 OR1M4P-201ENST00000589199 287 ntBASIC4.88□□□□□ -1.63
CCDC9Q9Y3X0 LINC01928-201ENST00000591029 504 ntTSL 3 BASIC4.88□□□□□ -1.63
CCDC9Q9Y3X0 AC020895.1-201ENST00000595362 272 ntBASIC4.88□□□□□ -1.63
CCDC9Q9Y3X0 CTHRC1P1-201ENST00000605383 469 ntBASIC4.88□□□□□ -1.63
CCDC9Q9Y3X0 RNU6-6P-201ENST00000606623 107 ntBASIC4.88□□□□□ -1.63
CCDC9Q9Y3X0 AL360267.1-201ENST00000607309 666 ntTSL 4 BASIC4.88□□□□□ -1.63
CCDC9Q9Y3X0 AC011890.2-201ENST00000613393 294 ntBASIC4.88□□□□□ -1.63
CCDC9Q9Y3X0 ATP5A1P2-202ENST00000616464 443 ntBASIC4.88□□□□□ -1.63
CCDC9Q9Y3X0 Z69720.2-201ENST00000624755 279 ntBASIC4.88□□□□□ -1.63
CCDC9Q9Y3X0 STEAP4-202ENST00000380079 9988 ntAPPRIS P1 TSL 1 (best) BASIC4.88□□□□□ -1.63
CCDC9Q9Y3X0 MAP3K7-202ENST00000369325 4633 ntTSL 1 (best) BASIC4.88□□□□□ -1.63
CCDC9Q9Y3X0 MT-ND5-201ENST00000361567 1812 ntAPPRIS P1 BASIC4.88□□□□□ -1.63
CCDC9Q9Y3X0 RAPGEF6-202ENST00000308008 4176 ntTSL 1 (best) BASIC4.87□□□□□ -1.63
CCDC9Q9Y3X0 C6orf10-204ENST00000447241 2148 ntAPPRIS P3 TSL 5 BASIC4.87□□□□□ -1.63
CCDC9Q9Y3X0 AC010889.1-201ENST00000566193 2666 ntBASIC4.87□□□□□ -1.63
CCDC9Q9Y3X0 CUL3-203ENST00000409096 2701 ntTSL 1 (best) BASIC4.87□□□□□ -1.63
CCDC9Q9Y3X0 KRTAP15-1-201ENST00000334067 671 ntAPPRIS P1 BASIC4.87□□□□□ -1.63
CCDC9Q9Y3X0 RNU1-100P-201ENST00000365255 165 ntBASIC4.87□□□□□ -1.63
CCDC9Q9Y3X0 Y_RNA.414-201ENST00000384011 101 ntBASIC4.87□□□□□ -1.63
CCDC9Q9Y3X0 RPL21P111-201ENST00000418453 477 ntBASIC4.87□□□□□ -1.63
CCDC9Q9Y3X0 AL355314.2-201ENST00000427182 436 ntTSL 3 BASIC4.87□□□□□ -1.63
CCDC9Q9Y3X0 AC097662.1-205ENST00000433324 241 ntTSL 5 BASIC4.87□□□□□ -1.63
CCDC9Q9Y3X0 AL121821.1-201ENST00000557067 530 ntTSL 3 BASIC4.87□□□□□ -1.63
CCDC9Q9Y3X0 AC012254.1-201ENST00000592747 200 ntTSL 3 BASIC4.87□□□□□ -1.63
CCDC9Q9Y3X0 AL139395.1-201ENST00000603662 160 ntBASIC4.87□□□□□ -1.63
CCDC9Q9Y3X0 AC107294.3-201ENST00000609211 526 ntBASIC4.87□□□□□ -1.63
CCDC9Q9Y3X0 MIR7154-201ENST00000620673 73 ntBASIC4.87□□□□□ -1.63
CCDC9Q9Y3X0 TMCO5A-203ENST00000558158 2894 ntAPPRIS ALT2 TSL 3 BASIC4.87□□□□□ -1.63
CCDC9Q9Y3X0 RAPH1-203ENST00000374493 3909 ntAPPRIS ALT2 TSL 5 BASIC4.87□□□□□ -1.63
CCDC9Q9Y3X0 LRIF1-203ENST00000494675 1912 ntAPPRIS ALT2 TSL 2 BASIC4.87□□□□□ -1.63
CCDC9Q9Y3X0 LRRTM4-201ENST00000409088 3616 ntTSL 1 (best) BASIC4.87□□□□□ -1.63
CCDC9Q9Y3X0 PPIP5K2-217ENST00000627916 6010 ntAPPRIS ALT2 TSL 5 BASIC4.87□□□□□ -1.63
CCDC9Q9Y3X0 STON1-GTF2A1L-202ENST00000394754 3824 ntAPPRIS P1 TSL 1 (best) BASIC4.87□□□□□ -1.63
CCDC9Q9Y3X0 MMS22L-202ENST00000369251 3949 ntTSL 2 BASIC4.87□□□□□ -1.63
CCDC9Q9Y3X0 KNTC1-204ENST00000436959 2412 ntTSL 2 BASIC4.86□□□□□ -1.63
CCDC9Q9Y3X0 GPR171-201ENST00000309180 1786 ntAPPRIS P1 TSL 1 (best) BASIC4.86□□□□□ -1.63
CCDC9Q9Y3X0 FILIP1L-206ENST00000471562 2854 ntTSL 1 (best) BASIC4.86□□□□□ -1.63
CCDC9Q9Y3X0 ADGRL2-211ENST00000370730 6173 ntTSL 5 BASIC4.86□□□□□ -1.63
CCDC9Q9Y3X0 CLEC7A-202ENST00000304084 1130 ntAPPRIS ALT1 TSL 1 (best) BASIC4.86□□□□□ -1.63
CCDC9Q9Y3X0 DLEU2_6.3-201ENST00000340052 136 ntBASIC4.86□□□□□ -1.63
CCDC9Q9Y3X0 RNU6-858P-201ENST00000362436 107 ntBASIC4.86□□□□□ -1.63
CCDC9Q9Y3X0 RNU5E-7P-201ENST00000365290 117 ntBASIC4.86□□□□□ -1.63
CCDC9Q9Y3X0 RNU6-301P-201ENST00000384277 107 ntBASIC4.86□□□□□ -1.63
CCDC9Q9Y3X0 AC009411.1-202ENST00000412424 548 ntTSL 4 BASIC4.86□□□□□ -1.63
CCDC9Q9Y3X0 DBIP2-201ENST00000419076 262 ntBASIC4.86□□□□□ -1.63
CCDC9Q9Y3X0 AL136234.1-201ENST00000437080 349 ntTSL 2 BASIC4.86□□□□□ -1.63
CCDC9Q9Y3X0 AL020998.1-201ENST00000444923 229 ntTSL 3 BASIC4.86□□□□□ -1.63
CCDC9Q9Y3X0 RPL23AP14-201ENST00000468281 468 ntBASIC4.86□□□□□ -1.63
CCDC9Q9Y3X0 RN7SL585P-201ENST00000470538 280 ntBASIC4.86□□□□□ -1.63
CCDC9Q9Y3X0 RNA5SP208-201ENST00000516156 78 ntBASIC4.86□□□□□ -1.63
CCDC9Q9Y3X0 IGHV3-76-201ENST00000522465 295 ntBASIC4.86□□□□□ -1.63
CCDC9Q9Y3X0 AC008056.1-201ENST00000553322 394 ntTSL 3 BASIC4.86□□□□□ -1.63
CCDC9Q9Y3X0 AL132819.1-201ENST00000555595 208 ntTSL 3 BASIC4.86□□□□□ -1.63
CCDC9Q9Y3X0 AC007151.1-201ENST00000572774 483 ntBASIC4.86□□□□□ -1.63
CCDC9Q9Y3X0 AL133393.1-201ENST00000603277 287 ntBASIC4.86□□□□□ -1.63
CCDC9Q9Y3X0 AC012603.1-201ENST00000606424 528 ntBASIC4.86□□□□□ -1.63
CCDC9Q9Y3X0 DLEU2_6.2-201ENST00000620994 136 ntBASIC4.86□□□□□ -1.63
CCDC9Q9Y3X0 AL773545.4-201ENST00000637262 310 ntBASIC4.86□□□□□ -1.63
CCDC9Q9Y3X0 AL513478.4-201ENST00000641636 310 ntBASIC4.86□□□□□ -1.63
CCDC9Q9Y3X0 HNRNPC-203ENST00000430246 4501 ntAPPRIS P2 TSL 1 (best) BASIC4.86□□□□□ -1.63
CCDC9Q9Y3X0 SAMD3-214ENST00000532763 3690 ntTSL 5 BASIC4.85□□□□□ -1.63
CCDC9Q9Y3X0 SULT1B1-201ENST00000310613 7115 ntAPPRIS P1 TSL 1 (best) BASIC4.85□□□□□ -1.63
CCDC9Q9Y3X0 CUL2-206ENST00000421317 2376 ntTSL 2 BASIC4.85□□□□□ -1.63
CCDC9Q9Y3X0 KIF21A-203ENST00000541463 4866 ntTSL 1 (best) BASIC4.85□□□□□ -1.63
CCDC9Q9Y3X0 MIR513A2-201ENST00000385249 127 ntBASIC4.85□□□□□ -1.63
CCDC9Q9Y3X0 RNU6-510P-201ENST00000391239 108 ntBASIC4.85□□□□□ -1.63
CCDC9Q9Y3X0 SAR1AP2-201ENST00000392696 594 ntBASIC4.85□□□□□ -1.63
CCDC9Q9Y3X0 MIR450B-201ENST00000401182 78 ntBASIC4.85□□□□□ -1.63
CCDC9Q9Y3X0 AL096701.2-201ENST00000416920 238 ntBASIC4.85□□□□□ -1.63
CCDC9Q9Y3X0 AL365400.1-201ENST00000431854 640 ntBASIC4.85□□□□□ -1.63
CCDC9Q9Y3X0 HMGB3P22-202ENST00000451823 572 ntBASIC4.85□□□□□ -1.63
CCDC9Q9Y3X0 RPS29P12-201ENST00000460178 152 ntBASIC4.85□□□□□ -1.63
CCDC9Q9Y3X0 AC098851.1-201ENST00000476561 570 ntTSL 4 BASIC4.85□□□□□ -1.63
CCDC9Q9Y3X0 MTCO2P30-201ENST00000503662 364 ntBASIC4.85□□□□□ -1.63
CCDC9Q9Y3X0 PHBP14-201ENST00000512887 367 ntBASIC4.85□□□□□ -1.63
CCDC9Q9Y3X0 AC136777.1-201ENST00000517765 369 ntTSL 4 BASIC4.85□□□□□ -1.63
CCDC9Q9Y3X0 AC008011.1-201ENST00000545989 227 ntBASIC4.85□□□□□ -1.63
CCDC9Q9Y3X0 MTND6P33-201ENST00000571794 183 ntBASIC4.85□□□□□ -1.63
CCDC9Q9Y3X0 AC016747.2-202ENST00000607743 332 ntTSL 5 BASIC4.85□□□□□ -1.63
CCDC9Q9Y3X0 HTN1-205ENST00000610341 536 ntAPPRIS P1 TSL 1 (best) BASIC4.85□□□□□ -1.63
CCDC9Q9Y3X0 UCA1.1-201ENST00000620952 75 ntBASIC4.85□□□□□ -1.63
CCDC9Q9Y3X0 LINC00890-202ENST00000569275 4595 ntAPPRIS P1 TSL 1 (best) BASIC4.84□□□□□ -1.63
CCDC9Q9Y3X0 PLS1-201ENST00000337777 3755 ntAPPRIS P1 TSL 1 (best) BASIC4.84□□□□□ -1.63
CCDC9Q9Y3X0 ZNF638-203ENST00000409544 6821 ntAPPRIS P1 TSL 1 (best) BASIC4.84□□□□□ -1.63
CCDC9Q9Y3X0 CBX3P1-201ENST00000325243 554 ntBASIC4.84□□□□□ -1.63
CCDC9Q9Y3X0 RNU6-1252P-201ENST00000363054 104 ntBASIC4.84□□□□□ -1.63
CCDC9Q9Y3X0 RNU6-19P-201ENST00000384718 107 ntBASIC4.84□□□□□ -1.63
CCDC9Q9Y3X0 AC138393.2-201ENST00000414742 246 ntBASIC4.84□□□□□ -1.63
CCDC9Q9Y3X0 PSPC1-AS2-201ENST00000423023 376 ntTSL 3 BASIC4.84□□□□□ -1.63
CCDC9Q9Y3X0 RPL35AP12-201ENST00000425362 338 ntBASIC4.84□□□□□ -1.63
CCDC9Q9Y3X0 AL360091.2-201ENST00000446847 650 ntTSL 5 BASIC4.84□□□□□ -1.63
CCDC9Q9Y3X0 AC012308.1-201ENST00000451232 178 ntBASIC4.84□□□□□ -1.63
CCDC9Q9Y3X0 RN7SKP256-201ENST00000517201 314 ntBASIC4.84□□□□□ -1.63
CCDC9Q9Y3X0 LINC02459-201ENST00000551761 474 ntTSL 3 BASIC4.84□□□□□ -1.63
CCDC9Q9Y3X0 BX546450.2-201ENST00000602419 435 ntTSL 5 BASIC4.84□□□□□ -1.63
CCDC9Q9Y3X0 AP000787.2-201ENST00000604432 568 ntBASIC4.84□□□□□ -1.63
Retrieved 100 of 98,524 protein–RNA pairs in 94.7 ms