Protein–RNA interactions for Protein: Q9Y3E7

CHMP3, Charged multivesicular body protein 3, humanhuman

Predictions only

Length 222 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP3Q9Y3E7 RNU2-71P-201ENST00000411395 189 ntBASIC5.13□□□□□ -1.59
CHMP3Q9Y3E7 AP000275.1-201ENST00000411943 390 ntBASIC5.13□□□□□ -1.59
CHMP3Q9Y3E7 INTS6-AS1-201ENST00000434512 466 ntTSL 3 BASIC5.13□□□□□ -1.59
CHMP3Q9Y3E7 RPL23AP22-201ENST00000437556 453 ntBASIC5.13□□□□□ -1.59
CHMP3Q9Y3E7 RPS29P7-201ENST00000439662 171 ntBASIC5.13□□□□□ -1.59
CHMP3Q9Y3E7 AC079354.2-201ENST00000453523 154 ntBASIC5.13□□□□□ -1.59
CHMP3Q9Y3E7 AL392086.1-201ENST00000457632 299 ntTSL 3 BASIC5.13□□□□□ -1.59
CHMP3Q9Y3E7 U8.21-201ENST00000459536 136 ntBASIC5.13□□□□□ -1.59
CHMP3Q9Y3E7 UBE2Q2P9-201ENST00000490086 202 ntBASIC5.13□□□□□ -1.59
CHMP3Q9Y3E7 Y_RNA.713-201ENST00000517013 96 ntBASIC5.13□□□□□ -1.59
CHMP3Q9Y3E7 LINC02386-202ENST00000551287 564 ntTSL 4 BASIC5.13□□□□□ -1.59
CHMP3Q9Y3E7 AC069029.1-201ENST00000558736 263 ntTSL 2 BASIC5.13□□□□□ -1.59
CHMP3Q9Y3E7 AC020891.1-201ENST00000558785 174 ntTSL 3 BASIC5.13□□□□□ -1.59
CHMP3Q9Y3E7 MIR4286-201ENST00000580651 93 ntBASIC5.13□□□□□ -1.59
CHMP3Q9Y3E7 RPS4XP16-203ENST00000596904 698 ntTSL 5 BASIC5.13□□□□□ -1.59
CHMP3Q9Y3E7 LINC01232-201ENST00000625254 836 ntTSL 5 BASIC5.13□□□□□ -1.59
CHMP3Q9Y3E7 CLCA3P-202ENST00000466454 3412 ntTSL 1 (best) BASIC5.13□□□□□ -1.59
CHMP3Q9Y3E7 CFL2-202ENST00000341223 3131 ntAPPRIS P1 TSL 1 (best) BASIC5.13□□□□□ -1.59
CHMP3Q9Y3E7 OR9H1P-201ENST00000446393 4888 ntAPPRIS P1 BASIC5.13□□□□□ -1.59
CHMP3Q9Y3E7 CNGA1-209ENST00000544810 2722 ntAPPRIS ALT2 TSL 5 BASIC5.12□□□□□ -1.59
CHMP3Q9Y3E7 AC024940.1-203ENST00000398963 4423 ntAPPRIS ALT2 TSL 5 BASIC5.12□□□□□ -1.59
CHMP3Q9Y3E7 ANKRD36C-202ENST00000456556 5428 ntAPPRIS P1 TSL 5 BASIC5.12□□□□□ -1.59
CHMP3Q9Y3E7 SLC17A4-203ENST00000439485 3699 ntTSL 5 BASIC5.12□□□□□ -1.59
CHMP3Q9Y3E7 MT-CO2-201ENST00000361739 684 ntAPPRIS P1 BASIC5.12□□□□□ -1.59
CHMP3Q9Y3E7 MIR335-201ENST00000362173 94 ntBASIC5.12□□□□□ -1.59
CHMP3Q9Y3E7 RNA5SP388-201ENST00000362584 119 ntBASIC5.12□□□□□ -1.59
CHMP3Q9Y3E7 RNU6-428P-201ENST00000362942 107 ntBASIC5.12□□□□□ -1.59
CHMP3Q9Y3E7 SNORD35B-201ENST00000363660 87 ntBASIC5.12□□□□□ -1.59
CHMP3Q9Y3E7 Y_RNA.277-201ENST00000364754 102 ntBASIC5.12□□□□□ -1.59
CHMP3Q9Y3E7 Y_RNA.358-201ENST00000365491 99 ntBASIC5.12□□□□□ -1.59
CHMP3Q9Y3E7 RNU6-629P-201ENST00000384061 103 ntBASIC5.12□□□□□ -1.59
CHMP3Q9Y3E7 LINC00894-201ENST00000413076 403 ntTSL 3 BASIC5.12□□□□□ -1.59
CHMP3Q9Y3E7 AC096920.1-201ENST00000423991 241 ntBASIC5.12□□□□□ -1.59
CHMP3Q9Y3E7 AL691449.1-201ENST00000426570 421 ntBASIC5.12□□□□□ -1.59
CHMP3Q9Y3E7 RPL30P10-201ENST00000488148 337 ntBASIC5.12□□□□□ -1.59
CHMP3Q9Y3E7 RNU6-789P-201ENST00000517105 102 ntBASIC5.12□□□□□ -1.59
CHMP3Q9Y3E7 AC025871.1-201ENST00000523935 443 ntTSL 2 BASIC5.12□□□□□ -1.59
CHMP3Q9Y3E7 AC008962.1-201ENST00000605729 304 ntBASIC5.12□□□□□ -1.59
CHMP3Q9Y3E7 AL161629.2-201ENST00000615347 275 ntBASIC5.12□□□□□ -1.59
CHMP3Q9Y3E7 MIR376A1-201ENST00000616574 68 ntBASIC5.12□□□□□ -1.59
CHMP3Q9Y3E7 MIR7151-201ENST00000617477 60 ntBASIC5.12□□□□□ -1.59
CHMP3Q9Y3E7 U6.92-201ENST00000636464 89 ntBASIC5.12□□□□□ -1.59
CHMP3Q9Y3E7 BMPR1B-203ENST00000440890 5388 ntTSL 2 BASIC5.12□□□□□ -1.59
CHMP3Q9Y3E7 ZNF480-202ENST00000335090 2722 ntTSL 3 BASIC5.12□□□□□ -1.59
CHMP3Q9Y3E7 PANK1-203ENST00000342512 2703 ntAPPRIS P1 TSL 1 (best) BASIC5.12□□□□□ -1.59
CHMP3Q9Y3E7 RNF180-202ENST00000389100 4906 ntAPPRIS P1 TSL 1 (best) BASIC5.12□□□□□ -1.59
CHMP3Q9Y3E7 MCF2-201ENST00000338585 2826 ntAPPRIS ALT2 TSL 1 (best) BASIC5.12□□□□□ -1.59
CHMP3Q9Y3E7 RAPH1-203ENST00000374493 3909 ntAPPRIS ALT2 TSL 5 BASIC5.12□□□□□ -1.59
CHMP3Q9Y3E7 NLGN1-206ENST00000457714 8242 ntAPPRIS P1 TSL 1 (best) BASIC5.12□□□□□ -1.59
CHMP3Q9Y3E7 ZNF705E-201ENST00000525199 3442 ntAPPRIS P1 TSL 2 BASIC5.11□□□□□ -1.59
CHMP3Q9Y3E7 OR10J1-203ENST00000642080 3503 ntAPPRIS P1 BASIC5.11□□□□□ -1.59
CHMP3Q9Y3E7 ARHGAP28-202ENST00000314319 5415 ntAPPRIS P2 TSL 5 BASIC5.11□□□□□ -1.59
CHMP3Q9Y3E7 AC110597.3-202ENST00000583493 3289 ntTSL 5 BASIC5.11□□□□□ -1.59
CHMP3Q9Y3E7 CCNT2-201ENST00000264157 6917 ntAPPRIS P1 TSL 1 (best) BASIC5.11□□□□□ -1.59
CHMP3Q9Y3E7 MIR412-201ENST00000362142 91 ntBASIC5.11□□□□□ -1.59
CHMP3Q9Y3E7 Y_RNA.29-201ENST00000362570 113 ntBASIC5.11□□□□□ -1.59
CHMP3Q9Y3E7 Y_RNA.269-201ENST00000364685 89 ntBASIC5.11□□□□□ -1.59
CHMP3Q9Y3E7 MIR134-201ENST00000385258 73 ntBASIC5.11□□□□□ -1.59
CHMP3Q9Y3E7 SNORD115-46-201ENST00000390982 71 ntBASIC5.11□□□□□ -1.59
CHMP3Q9Y3E7 AC012370.1-201ENST00000419244 530 ntTSL 3 BASIC5.11□□□□□ -1.59
CHMP3Q9Y3E7 AC010745.2-201ENST00000420404 839 ntTSL 3 BASIC5.11□□□□□ -1.59
CHMP3Q9Y3E7 AC093151.3-203ENST00000422305 514 ntTSL 3 BASIC5.11□□□□□ -1.59
CHMP3Q9Y3E7 AL353680.1-201ENST00000433788 337 ntTSL 3 BASIC5.11□□□□□ -1.59
CHMP3Q9Y3E7 AC092919.1-201ENST00000467896 229 ntTSL 2 BASIC5.11□□□□□ -1.59
CHMP3Q9Y3E7 RPL29P14-201ENST00000495837 428 ntBASIC5.11□□□□□ -1.59
CHMP3Q9Y3E7 AC008957.1-201ENST00000510740 478 ntTSL 3 BASIC5.11□□□□□ -1.59
CHMP3Q9Y3E7 AC010420.1-201ENST00000515077 509 ntTSL 3 BASIC5.11□□□□□ -1.59
CHMP3Q9Y3E7 Y_RNA.700-201ENST00000516806 100 ntBASIC5.11□□□□□ -1.59
CHMP3Q9Y3E7 AC120057.2-201ENST00000571520 271 ntBASIC5.11□□□□□ -1.59
CHMP3Q9Y3E7 FAM60BP-201ENST00000578364 658 ntBASIC5.11□□□□□ -1.59
CHMP3Q9Y3E7 MIR4300-201ENST00000581016 96 ntBASIC5.11□□□□□ -1.59
CHMP3Q9Y3E7 MIR5684-201ENST00000585074 65 ntBASIC5.11□□□□□ -1.59
CHMP3Q9Y3E7 AL606490.9-201ENST00000603331 271 ntBASIC5.11□□□□□ -1.59
CHMP3Q9Y3E7 AC099669.2-201ENST00000616549 437 ntBASIC5.11□□□□□ -1.59
CHMP3Q9Y3E7 Hammerhead_HH10.1-201ENST00000620658 125 ntBASIC5.11□□□□□ -1.59
CHMP3Q9Y3E7 MIR6500-201ENST00000622700 86 ntBASIC5.11□□□□□ -1.59
CHMP3Q9Y3E7 PRPSAP2-229ENST00000628609 192 ntTSL 5 BASIC5.11□□□□□ -1.59
CHMP3Q9Y3E7 SEC23A-202ENST00000537403 4215 ntTSL 2 BASIC5.11□□□□□ -1.59
CHMP3Q9Y3E7 C2orf16-202ENST00000447166 16401 ntAPPRIS ALT2 TSL 3 BASIC5.11□□□□□ -1.59
CHMP3Q9Y3E7 DMXL2-202ENST00000449909 7465 ntAPPRIS ALT2 TSL 1 (best) BASIC5.11□□□□□ -1.59
CHMP3Q9Y3E7 RPAP2-203ENST00000610020 16993 ntAPPRIS P1 TSL 1 (best) BASIC5.11□□□□□ -1.59
CHMP3Q9Y3E7 LINC02232-201ENST00000509932 4079 ntTSL 1 (best) BASIC5.1□□□□□ -1.59
CHMP3Q9Y3E7 THEMIS-202ENST00000368250 4101 ntAPPRIS P3 TSL 5 BASIC5.1□□□□□ -1.59
CHMP3Q9Y3E7 MDM2-206ENST00000350057 1401 ntTSL 1 (best) BASIC5.1□□□□□ -1.59
CHMP3Q9Y3E7 OR2L3-201ENST00000359959 2792 ntAPPRIS P1 BASIC5.1□□□□□ -1.59
CHMP3Q9Y3E7 GTSF1L-202ENST00000373005 459 ntAPPRIS ALT2 TSL 3 BASIC5.1□□□□□ -1.59
CHMP3Q9Y3E7 ZNF594-201ENST00000399604 4862 ntAPPRIS P1 BASIC5.1□□□□□ -1.59
CHMP3Q9Y3E7 PREPL-206ENST00000409936 5212 ntAPPRIS P1 TSL 1 (best) BASIC5.1□□□□□ -1.59
CHMP3Q9Y3E7 AC051618.1-201ENST00000414295 207 ntTSL 3 BASIC5.1□□□□□ -1.59
CHMP3Q9Y3E7 AC091286.1-201ENST00000431233 461 ntBASIC5.1□□□□□ -1.59
CHMP3Q9Y3E7 U8.22-201ENST00000459141 133 ntBASIC5.1□□□□□ -1.59
CHMP3Q9Y3E7 AC034236.1-201ENST00000469891 373 ntBASIC5.1□□□□□ -1.59
CHMP3Q9Y3E7 AC087190.1-201ENST00000484462 480 ntBASIC5.1□□□□□ -1.59
CHMP3Q9Y3E7 AC107032.1-201ENST00000485945 480 ntBASIC5.1□□□□□ -1.59
CHMP3Q9Y3E7 LINC02458-201ENST00000500381 2941 ntTSL 2 BASIC5.1□□□□□ -1.59
CHMP3Q9Y3E7 AC116563.1-201ENST00000505454 396 ntTSL 3 BASIC5.1□□□□□ -1.59
CHMP3Q9Y3E7 LINC02230-201ENST00000511174 301 ntTSL 5 BASIC5.1□□□□□ -1.59
CHMP3Q9Y3E7 MTX3-203ENST00000512560 4799 ntTSL 2 BASIC5.1□□□□□ -1.59
CHMP3Q9Y3E7 RNU6-612P-201ENST00000516909 102 ntBASIC5.1□□□□□ -1.59
CHMP3Q9Y3E7 RNU4-60P-201ENST00000517239 135 ntBASIC5.1□□□□□ -1.59
Retrieved 100 of 98,524 protein–RNA pairs in 107.4 ms