Protein–RNA interactions for Protein: Q9Y261

FOXA2, Hepatocyte nuclear factor 3-beta, humanhuman

Predicted RBP Predictions only

Length 457 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA2Q9Y261 AC018437.1-201ENST00000492214 406 ntBASIC2.35□□□□□ -2.03
FOXA2Q9Y261 AC117522.3-201ENST00000507974 584 ntBASIC2.35□□□□□ -2.03
FOXA2Q9Y261 AP000873.5-201ENST00000533906 236 ntBASIC2.35□□□□□ -2.03
FOXA2Q9Y261 AC024270.4-201ENST00000570202 421 ntTSL 3 BASIC2.35□□□□□ -2.03
FOXA2Q9Y261 AC012313.1-202ENST00000597309 423 ntTSL 3 BASIC2.35□□□□□ -2.03
FOXA2Q9Y261 AC069234.5-201ENST00000611056 416 ntBASIC2.35□□□□□ -2.03
FOXA2Q9Y261 NPPA-AS1_3.1-201ENST00000617059 108 ntBASIC2.35□□□□□ -2.03
FOXA2Q9Y261 AC011155.2-201ENST00000623202 216 ntBASIC2.35□□□□□ -2.03
FOXA2Q9Y261 SCARNA4-202ENST00000625402 129 ntBASIC2.35□□□□□ -2.03
FOXA2Q9Y261 ATM-228ENST00000639240 498 ntTSL 5 BASIC2.35□□□□□ -2.03
FOXA2Q9Y261 ATM-230ENST00000640388 578 ntTSL 5 BASIC2.35□□□□□ -2.03
FOXA2Q9Y261 ZNF117-204ENST00000620222 5317 ntAPPRIS P1 TSL 1 (best) BASIC2.35□□□□□ -2.03
FOXA2Q9Y261 MACC1-202ENST00000400331 9159 ntAPPRIS P1 TSL 2 BASIC2.35□□□□□ -2.03
FOXA2Q9Y261 AKAP9-202ENST00000358100 10309 ntTSL 1 (best) BASIC2.35□□□□□ -2.03
FOXA2Q9Y261 C1orf141-203ENST00000371007 2153 ntAPPRIS P3 TSL 5 BASIC2.34□□□□□ -2.03
FOXA2Q9Y261 GABRG2-209ENST00000638660 3799 ntTSL 5 BASIC2.34□□□□□ -2.03
FOXA2Q9Y261 GABRG2-221ENST00000639683 3600 ntTSL 5 BASIC2.34□□□□□ -2.03
FOXA2Q9Y261 TFEC-202ENST00000320239 6605 ntAPPRIS P1 TSL 1 (best) BASIC2.34□□□□□ -2.03
FOXA2Q9Y261 RNU6-181P-201ENST00000363225 107 ntBASIC2.34□□□□□ -2.03
FOXA2Q9Y261 RNU6-371P-201ENST00000364283 108 ntBASIC2.34□□□□□ -2.03
FOXA2Q9Y261 RNA5SP125-201ENST00000364843 120 ntBASIC2.34□□□□□ -2.03
FOXA2Q9Y261 MIR512-1-201ENST00000384913 84 ntBASIC2.34□□□□□ -2.03
FOXA2Q9Y261 ELF3-AS1-201ENST00000415582 500 ntTSL 2 BASIC2.34□□□□□ -2.03
FOXA2Q9Y261 AC012370.1-201ENST00000419244 530 ntTSL 3 BASIC2.34□□□□□ -2.03
FOXA2Q9Y261 NUP35P1-201ENST00000422734 947 ntBASIC2.34□□□□□ -2.03
FOXA2Q9Y261 SUMO1P4-201ENST00000429430 302 ntBASIC2.34□□□□□ -2.03
FOXA2Q9Y261 AL365400.1-201ENST00000431854 640 ntBASIC2.34□□□□□ -2.03
FOXA2Q9Y261 AC000111.3-201ENST00000433478 193 ntBASIC2.34□□□□□ -2.03
FOXA2Q9Y261 AC095032.1-201ENST00000444810 527 ntTSL 3 BASIC2.34□□□□□ -2.03
FOXA2Q9Y261 AC104688.1-201ENST00000447158 419 ntTSL 3 BASIC2.34□□□□□ -2.03
FOXA2Q9Y261 AC079448.1-201ENST00000449377 373 ntBASIC2.34□□□□□ -2.03
FOXA2Q9Y261 MIR1302-2HG-201ENST00000469289 535 ntTSL 5 BASIC2.34□□□□□ -2.03
FOXA2Q9Y261 ARL2BPP4-201ENST00000506854 471 ntBASIC2.34□□□□□ -2.03
FOXA2Q9Y261 AC097467.3-212ENST00000512269 568 ntTSL 3 BASIC2.34□□□□□ -2.03
FOXA2Q9Y261 LINC02500-201ENST00000512547 493 ntTSL 3 BASIC2.34□□□□□ -2.03
FOXA2Q9Y261 RNU6-445P-201ENST00000516949 107 ntBASIC2.34□□□□□ -2.03
FOXA2Q9Y261 MTND2P38-201ENST00000522536 667 ntBASIC2.34□□□□□ -2.03
FOXA2Q9Y261 AC023442.3-201ENST00000532199 495 ntTSL 2 BASIC2.34□□□□□ -2.03
FOXA2Q9Y261 AC079598.5-201ENST00000547460 117 ntBASIC2.34□□□□□ -2.03
FOXA2Q9Y261 AC013417.1-201ENST00000549896 271 ntTSL 5 BASIC2.34□□□□□ -2.03
FOXA2Q9Y261 LINC02461-201ENST00000553211 836 ntTSL 3 BASIC2.34□□□□□ -2.03
FOXA2Q9Y261 AC006504.5-204ENST00000592404 765 ntTSL 3 BASIC2.34□□□□□ -2.03
FOXA2Q9Y261 RPS15AP11-201ENST00000594193 385 ntBASIC2.34□□□□□ -2.03
FOXA2Q9Y261 BNIP3P30-201ENST00000601184 574 ntBASIC2.34□□□□□ -2.03
FOXA2Q9Y261 AL161756.2-201ENST00000604597 246 ntBASIC2.34□□□□□ -2.03
FOXA2Q9Y261 AC098614.4-201ENST00000607601 462 ntBASIC2.34□□□□□ -2.03
FOXA2Q9Y261 AC005332.10-201ENST00000612725 619 ntBASIC2.34□□□□□ -2.03
FOXA2Q9Y261 AC024581.2-201ENST00000619986 252 ntBASIC2.34□□□□□ -2.03
FOXA2Q9Y261 LINC00836-202ENST00000626230 1640 ntTSL 2 BASIC2.34□□□□□ -2.04
FOXA2Q9Y261 PMS1-215ENST00000447232 2576 ntTSL 2 BASIC2.34□□□□□ -2.04
FOXA2Q9Y261 ZMYM1-210ENST00000611874 4466 ntAPPRIS P1 TSL 2 BASIC2.34□□□□□ -2.04
FOXA2Q9Y261 ADGRG7-202ENST00000475887 2035 ntTSL 2 BASIC2.34□□□□□ -2.04
FOXA2Q9Y261 TCF12-203ENST00000343827 3956 ntTSL 1 (best) BASIC2.34□□□□□ -2.04
FOXA2Q9Y261 CUL3-203ENST00000409096 2701 ntTSL 1 (best) BASIC2.33□□□□□ -2.04
FOXA2Q9Y261 CAPS2-203ENST00000393284 3430 ntAPPRIS P1 TSL 1 (best) BASIC2.33□□□□□ -2.04
FOXA2Q9Y261 OFD1P6Y-202ENST00000451061 2724 ntBASIC2.33□□□□□ -2.04
FOXA2Q9Y261 OR4G2P-201ENST00000328113 903 ntBASIC2.33□□□□□ -2.04
FOXA2Q9Y261 SNORD114-19-201ENST00000363072 75 ntBASIC2.33□□□□□ -2.04
FOXA2Q9Y261 RNU6-851P-201ENST00000384565 107 ntBASIC2.33□□□□□ -2.04
FOXA2Q9Y261 RNU6-550P-201ENST00000391057 101 ntBASIC2.33□□□□□ -2.04
FOXA2Q9Y261 AL590004.2-201ENST00000404787 371 ntBASIC2.33□□□□□ -2.04
FOXA2Q9Y261 HMGN2P35-201ENST00000412164 270 ntBASIC2.33□□□□□ -2.04
FOXA2Q9Y261 AL355388.1-201ENST00000415726 401 ntTSL 2 BASIC2.33□□□□□ -2.04
FOXA2Q9Y261 LINC02559-201ENST00000420391 188 ntTSL 2 BASIC2.33□□□□□ -2.04
FOXA2Q9Y261 AL358934.1-201ENST00000432346 324 ntBASIC2.33□□□□□ -2.04
FOXA2Q9Y261 NFIA-AS1-201ENST00000442027 384 ntTSL 2 BASIC2.33□□□□□ -2.04
FOXA2Q9Y261 CALM1P1-201ENST00000442082 433 ntBASIC2.33□□□□□ -2.04
FOXA2Q9Y261 LINC00393-201ENST00000443621 282 ntTSL 3 BASIC2.33□□□□□ -2.04
FOXA2Q9Y261 AC092802.2-202ENST00000444665 371 ntTSL 5 BASIC2.33□□□□□ -2.04
FOXA2Q9Y261 C1DP4-201ENST00000455429 424 ntBASIC2.33□□□□□ -2.04
FOXA2Q9Y261 AL162395.1-201ENST00000457882 422 ntBASIC2.33□□□□□ -2.04
FOXA2Q9Y261 RPS29P15-201ENST00000458329 171 ntBASIC2.33□□□□□ -2.04
FOXA2Q9Y261 DYNLL1P5-201ENST00000467158 270 ntBASIC2.33□□□□□ -2.04
FOXA2Q9Y261 RN7SL499P-201ENST00000481141 276 ntBASIC2.33□□□□□ -2.04
FOXA2Q9Y261 AC140059.1-201ENST00000489238 361 ntBASIC2.33□□□□□ -2.04
FOXA2Q9Y261 AC083906.5-201ENST00000503722 328 ntBASIC2.33□□□□□ -2.04
FOXA2Q9Y261 AC117460.1-201ENST00000508964 467 ntTSL 3 BASIC2.33□□□□□ -2.04
FOXA2Q9Y261 VCAN-AS1-202ENST00000513899 453 ntTSL 3 BASIC2.33□□□□□ -2.04
FOXA2Q9Y261 SNORD27.1-201ENST00000516319 72 ntBASIC2.33□□□□□ -2.04
FOXA2Q9Y261 Y_RNA.687-201ENST00000516558 91 ntBASIC2.33□□□□□ -2.04
FOXA2Q9Y261 RNU6-430P-201ENST00000517078 107 ntBASIC2.33□□□□□ -2.04
FOXA2Q9Y261 LINC00824-201ENST00000517583 805 ntTSL 5 BASIC2.33□□□□□ -2.04
FOXA2Q9Y261 AC022695.3-201ENST00000523385 478 ntTSL 3 BASIC2.33□□□□□ -2.04
FOXA2Q9Y261 AC022080.3-201ENST00000544433 482 ntBASIC2.33□□□□□ -2.04
FOXA2Q9Y261 AC090049.1-201ENST00000551075 1011 ntTSL 3 BASIC2.33□□□□□ -2.04
FOXA2Q9Y261 SUB1P2-201ENST00000556401 297 ntBASIC2.33□□□□□ -2.04
FOXA2Q9Y261 AL391840.1-201ENST00000571144 367 ntBASIC2.33□□□□□ -2.04
FOXA2Q9Y261 MTCYBP33-201ENST00000575007 1130 ntBASIC2.33□□□□□ -2.04
FOXA2Q9Y261 AC107871.2-201ENST00000612894 502 ntBASIC2.33□□□□□ -2.04
FOXA2Q9Y261 HOTAIRM1_5.1-201ENST00000619311 145 ntBASIC2.33□□□□□ -2.04
FOXA2Q9Y261 AC091953.5-201ENST00000622919 233 ntBASIC2.33□□□□□ -2.04
FOXA2Q9Y261 CYP3A43-217ENST00000631161 328 ntTSL 5 BASIC2.33□□□□□ -2.04
FOXA2Q9Y261 C20orf24-208ENST00000639924 351 ntTSL 5 BASIC2.33□□□□□ -2.04
FOXA2Q9Y261 CEP57L1-203ENST00000368970 1680 ntAPPRIS ALT2 TSL 5 BASIC2.33□□□□□ -2.04
FOXA2Q9Y261 EFR3A-202ENST00000519656 5247 ntTSL 1 (best) BASIC2.33□□□□□ -2.04
FOXA2Q9Y261 SCN1A-219ENST00000641575 12874 ntAPPRIS ALT1 BASIC2.33□□□□□ -2.04
FOXA2Q9Y261 CEP44-203ENST00000426172 3037 ntTSL 5 BASIC2.33□□□□□ -2.04
FOXA2Q9Y261 RBBP8P1-201ENST00000449447 1844 ntBASIC2.33□□□□□ -2.04
FOXA2Q9Y261 AC092447.7-201ENST00000422212 1621 ntBASIC2.32□□□□□ -2.04
FOXA2Q9Y261 GPR183-201ENST00000376414 1700 ntAPPRIS P1 TSL 1 (best) BASIC2.32□□□□□ -2.04
Retrieved 100 of 98,524 protein–RNA pairs in 93.3 ms