Protein–RNA interactions for Protein: Q9UN37

VPS4A, Vacuolar protein sorting-associated protein 4A, humanhuman

Predictions only

Length 437 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4AQ9UN37 RNU6-694P-201ENST00000364071 147 ntBASIC3.37□□□□□ -1.87
VPS4AQ9UN37 RNA5SP219-201ENST00000390940 113 ntBASIC3.37□□□□□ -1.87
VPS4AQ9UN37 SNORA48.8-201ENST00000391324 134 ntBASIC3.37□□□□□ -1.87
VPS4AQ9UN37 AC239803.1-203ENST00000411978 452 ntTSL 2 BASIC3.37□□□□□ -1.87
VPS4AQ9UN37 RPL21P90-201ENST00000415692 466 ntBASIC3.37□□□□□ -1.87
VPS4AQ9UN37 AL353621.1-201ENST00000418219 243 ntBASIC3.37□□□□□ -1.87
VPS4AQ9UN37 BTF3L4P3-201ENST00000418879 476 ntBASIC3.37□□□□□ -1.87
VPS4AQ9UN37 NCOR1P3-201ENST00000420479 303 ntBASIC3.37□□□□□ -1.87
VPS4AQ9UN37 HMGB1P18-201ENST00000438801 619 ntBASIC3.37□□□□□ -1.87
VPS4AQ9UN37 HMGB3P11-201ENST00000440127 604 ntBASIC3.37□□□□□ -1.87
VPS4AQ9UN37 PIGFP3-201ENST00000441918 722 ntBASIC3.37□□□□□ -1.87
VPS4AQ9UN37 UBE2V1P7-201ENST00000446395 340 ntBASIC3.37□□□□□ -1.87
VPS4AQ9UN37 AL441989.1-201ENST00000454204 382 ntTSL 3 BASIC3.37□□□□□ -1.87
VPS4AQ9UN37 MAGI1-AS1-201ENST00000472514 591 ntTSL 3 BASIC3.37□□□□□ -1.87
VPS4AQ9UN37 RPL7P43-201ENST00000478876 753 ntBASIC3.37□□□□□ -1.87
VPS4AQ9UN37 KC877373.1-201ENST00000479066 408 ntBASIC3.37□□□□□ -1.87
VPS4AQ9UN37 AC110799.1-201ENST00000509098 449 ntTSL 3 BASIC3.37□□□□□ -1.87
VPS4AQ9UN37 AC008716.1-201ENST00000511084 513 ntBASIC3.37□□□□□ -1.87
VPS4AQ9UN37 SNORA19.2-201ENST00000516013 114 ntBASIC3.37□□□□□ -1.87
VPS4AQ9UN37 RNU6-277P-201ENST00000516272 106 ntBASIC3.37□□□□□ -1.87
VPS4AQ9UN37 SNORA25.17-201ENST00000517184 124 ntBASIC3.37□□□□□ -1.87
VPS4AQ9UN37 AP006245.1-201ENST00000522549 120 ntBASIC3.37□□□□□ -1.87
VPS4AQ9UN37 CASP1P1-201ENST00000526345 212 ntBASIC3.37□□□□□ -1.87
VPS4AQ9UN37 CYCSP27-201ENST00000527643 293 ntBASIC3.37□□□□□ -1.87
VPS4AQ9UN37 MIR4474-201ENST00000579189 78 ntBASIC3.37□□□□□ -1.87
VPS4AQ9UN37 MIR5692A1-201ENST00000580523 69 ntBASIC3.37□□□□□ -1.87
VPS4AQ9UN37 MIR548AC-201ENST00000585049 88 ntBASIC3.37□□□□□ -1.87
VPS4AQ9UN37 MIR4719-201ENST00000585233 84 ntBASIC3.37□□□□□ -1.87
VPS4AQ9UN37 ZNF667-AS1-209ENST00000601875 495 ntTSL 3 BASIC3.37□□□□□ -1.87
VPS4AQ9UN37 IGKV1OR2-6-201ENST00000603485 277 ntBASIC3.37□□□□□ -1.87
VPS4AQ9UN37 AC022149.2-201ENST00000621061 203 ntBASIC3.37□□□□□ -1.87
VPS4AQ9UN37 AL512643.1-201ENST00000635735 524 ntBASIC3.37□□□□□ -1.87
VPS4AQ9UN37 AC119674.1-207ENST00000641355 633 ntBASIC3.37□□□□□ -1.87
VPS4AQ9UN37 SYTL2-203ENST00000359152 4123 ntAPPRIS ALT1 TSL 1 (best) BASIC3.37□□□□□ -1.87
VPS4AQ9UN37 KNTC1-205ENST00000450485 3655 ntTSL 2 BASIC3.37□□□□□ -1.87
VPS4AQ9UN37 OR51L1-203ENST00000641819 7300 ntAPPRIS P1 BASIC3.37□□□□□ -1.87
VPS4AQ9UN37 SYNE2-212ENST00000554584 20508 ntTSL 5 BASIC3.37□□□□□ -1.87
VPS4AQ9UN37 AL049641.1-201ENST00000441055 1948 ntBASIC3.36□□□□□ -1.87
VPS4AQ9UN37 NUDT12-201ENST00000230792 3492 ntAPPRIS P1 TSL 1 (best) BASIC3.36□□□□□ -1.87
VPS4AQ9UN37 LINC00670-201ENST00000313495 2953 ntTSL 2 BASIC3.36□□□□□ -1.87
VPS4AQ9UN37 FASTKD1-205ENST00000453929 2791 ntTSL 2 BASIC3.36□□□□□ -1.87
VPS4AQ9UN37 Y_RNA.339-201ENST00000365325 102 ntBASIC3.36□□□□□ -1.87
VPS4AQ9UN37 TRAJ17-201ENST00000390520 63 ntAPPRIS P1 BASIC3.36□□□□□ -1.87
VPS4AQ9UN37 RNU2-3P-201ENST00000410144 191 ntBASIC3.36□□□□□ -1.87
VPS4AQ9UN37 C21orf91-OT1-202ENST00000430815 717 ntTSL 5 BASIC3.36□□□□□ -1.87
VPS4AQ9UN37 GPM6BP2-201ENST00000432046 144 ntBASIC3.36□□□□□ -1.87
VPS4AQ9UN37 AC005019.1-201ENST00000436455 431 ntBASIC3.36□□□□□ -1.87
VPS4AQ9UN37 GPM6BP1-201ENST00000446387 144 ntBASIC3.36□□□□□ -1.87
VPS4AQ9UN37 SSXP4-201ENST00000451349 245 ntBASIC3.36□□□□□ -1.87
VPS4AQ9UN37 RN7SL594P-201ENST00000470590 287 ntBASIC3.36□□□□□ -1.87
VPS4AQ9UN37 RPS4XP22-201ENST00000480755 780 ntBASIC3.36□□□□□ -1.87
VPS4AQ9UN37 AC114316.1-201ENST00000511323 278 ntTSL 5 BASIC3.36□□□□□ -1.87
VPS4AQ9UN37 RNU6-1088P-201ENST00000516850 104 ntBASIC3.36□□□□□ -1.87
VPS4AQ9UN37 RNU6-143P-201ENST00000516942 93 ntBASIC3.36□□□□□ -1.87
VPS4AQ9UN37 RNA5SP290-201ENST00000517133 127 ntBASIC3.36□□□□□ -1.87
VPS4AQ9UN37 RNA5SP291-201ENST00000517222 105 ntBASIC3.36□□□□□ -1.87
VPS4AQ9UN37 AC009902.1-201ENST00000519351 183 ntBASIC3.36□□□□□ -1.87
VPS4AQ9UN37 MS4A4E-206ENST00000528394 555 ntTSL 1 (best) BASIC3.36□□□□□ -1.87
VPS4AQ9UN37 OOSP2-203ENST00000532905 496 ntAPPRIS ALT2 TSL 3 BASIC3.36□□□□□ -1.87
VPS4AQ9UN37 AC005498.1-201ENST00000592125 465 ntBASIC3.36□□□□□ -1.87
VPS4AQ9UN37 AL512625.3-207ENST00000609749 477 ntTSL 3 BASIC3.36□□□□□ -1.87
VPS4AQ9UN37 FAM157A-202ENST00000615155 405 ntBASIC3.36□□□□□ -1.87
VPS4AQ9UN37 RMST_4.1-201ENST00000616886 107 ntBASIC3.36□□□□□ -1.87
VPS4AQ9UN37 C4orf22-209ENST00000621014 228 ntTSL 3 BASIC3.36□□□□□ -1.87
VPS4AQ9UN37 TOPORSLP1-203ENST00000493279 2871 ntTSL 4 BASIC3.36□□□□□ -1.87
VPS4AQ9UN37 PTPN22-211ENST00000538253 3575 ntTSL 1 (best) BASIC3.36□□□□□ -1.87
VPS4AQ9UN37 METTL18-201ENST00000303469 1426 ntAPPRIS P1 TSL 1 (best) BASIC3.36□□□□□ -1.87
VPS4AQ9UN37 KLRA1P-202ENST00000510134 1410 ntTSL 5 BASIC3.36□□□□□ -1.87
VPS4AQ9UN37 CASC1-205ENST00000545133 2146 ntAPPRIS ALT2 TSL 2 BASIC3.35□□□□□ -1.87
VPS4AQ9UN37 CHM-205ENST00000615443 2821 ntTSL 1 (best) BASIC3.35□□□□□ -1.87
VPS4AQ9UN37 FBXO11-201ENST00000402508 3844 ntAPPRIS P1 TSL 1 (best) BASIC3.35□□□□□ -1.87
VPS4AQ9UN37 MTRNR2L10-201ENST00000545075 1530 ntAPPRIS P1 BASIC3.35□□□□□ -1.87
VPS4AQ9UN37 SPZ1-201ENST00000296739 1868 ntAPPRIS P2 BASIC3.35□□□□□ -1.87
VPS4AQ9UN37 POSTN-203ENST00000379747 3373 ntAPPRIS P3 TSL 1 (best) BASIC3.35□□□□□ -1.87
VPS4AQ9UN37 AL161457.2-203ENST00000590767 2663 ntTSL 5 BASIC3.35□□□□□ -1.87
VPS4AQ9UN37 IL36B-202ENST00000327407 1052 ntAPPRIS P1 TSL 1 (best) BASIC3.35□□□□□ -1.87
VPS4AQ9UN37 Y_RNA.135-201ENST00000363439 95 ntBASIC3.35□□□□□ -1.87
VPS4AQ9UN37 Y_RNA.813-201ENST00000364639 102 ntBASIC3.35□□□□□ -1.87
VPS4AQ9UN37 RNU6-395P-201ENST00000365662 106 ntBASIC3.35□□□□□ -1.87
VPS4AQ9UN37 RNU6-217P-201ENST00000384164 104 ntBASIC3.35□□□□□ -1.87
VPS4AQ9UN37 Y_RNA.480-201ENST00000384364 102 ntBASIC3.35□□□□□ -1.87
VPS4AQ9UN37 Y_RNA.535-201ENST00000384612 99 ntBASIC3.35□□□□□ -1.87
VPS4AQ9UN37 SNORA48.5-201ENST00000391143 135 ntBASIC3.35□□□□□ -1.87
VPS4AQ9UN37 AC009411.1-202ENST00000412424 548 ntTSL 4 BASIC3.35□□□□□ -1.87
VPS4AQ9UN37 CYCSP33-201ENST00000414485 327 ntBASIC3.35□□□□□ -1.87
VPS4AQ9UN37 AL109947.1-201ENST00000423747 382 ntTSL 2 BASIC3.35□□□□□ -1.87
VPS4AQ9UN37 AC245052.1-201ENST00000426213 410 ntTSL 3 BASIC3.35□□□□□ -1.87
VPS4AQ9UN37 MTND4P28-201ENST00000426217 387 ntBASIC3.35□□□□□ -1.87
VPS4AQ9UN37 AC241644.2-201ENST00000426504 480 ntTSL 3 BASIC3.35□□□□□ -1.87
VPS4AQ9UN37 CYCSP4-201ENST00000429682 331 ntBASIC3.35□□□□□ -1.87
VPS4AQ9UN37 RPL23AP69-201ENST00000431134 458 ntBASIC3.35□□□□□ -1.87
VPS4AQ9UN37 PLCE1-AS2-203ENST00000433038 396 ntTSL 2 BASIC3.35□□□□□ -1.87
VPS4AQ9UN37 AC093579.1-201ENST00000439455 352 ntTSL 2 BASIC3.35□□□□□ -1.87
VPS4AQ9UN37 AL356124.2-201ENST00000442449 391 ntTSL 5 BASIC3.35□□□□□ -1.87
VPS4AQ9UN37 AL357552.1-201ENST00000445254 415 ntBASIC3.35□□□□□ -1.87
VPS4AQ9UN37 AC087884.1-201ENST00000469738 328 ntBASIC3.35□□□□□ -1.87
VPS4AQ9UN37 MTCO1P29-201ENST00000496868 288 ntBASIC3.35□□□□□ -1.87
VPS4AQ9UN37 AC026780.2-201ENST00000503489 730 ntTSL 5 BASIC3.35□□□□□ -1.87
VPS4AQ9UN37 AC103726.1-201ENST00000520785 474 ntTSL 2 BASIC3.35□□□□□ -1.87
VPS4AQ9UN37 AC026333.2-201ENST00000542164 106 ntBASIC3.35□□□□□ -1.87
Retrieved 100 of 98,524 protein–RNA pairs in 122.4 ms