Protein–RNA interactions for Protein: Q9NVE4

CCDC87, Coiled-coil domain-containing protein 87, humanhuman

Predictions only

Length 849 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC87Q9NVE4 PLCB1-233ENST00000637919 5074 ntTSL 5 BASIC4.96□□□□□ -1.62
CCDC87Q9NVE4 ZNF705D-202ENST00000400085 3377 ntAPPRIS P1 TSL 5 BASIC4.96□□□□□ -1.62
CCDC87Q9NVE4 MTND5P7-201ENST00000413558 1798 ntBASIC4.96□□□□□ -1.62
CCDC87Q9NVE4 ADGRL2-205ENST00000370717 5873 ntAPPRIS ALT2 TSL 5 BASIC4.95□□□□□ -1.62
CCDC87Q9NVE4 CD84-206ENST00000368054 8181 ntAPPRIS P3 TSL 1 (best) BASIC4.95□□□□□ -1.62
CCDC87Q9NVE4 ZNF99-202ENST00000596209 7817 ntTSL 5 BASIC4.95□□□□□ -1.62
CCDC87Q9NVE4 ANKRD26P2-201ENST00000445530 1710 ntBASIC4.95□□□□□ -1.62
CCDC87Q9NVE4 ZSCAN26-204ENST00000614088 2321 ntTSL 3 BASIC4.95□□□□□ -1.62
CCDC87Q9NVE4 PLSCR5-201ENST00000443512 1969 ntAPPRIS P1 TSL 1 (best) BASIC4.95□□□□□ -1.62
CCDC87Q9NVE4 RGS22-214ENST00000523287 4033 ntAPPRIS ALT2 TSL 2 BASIC4.95□□□□□ -1.62
CCDC87Q9NVE4 RBM39-201ENST00000253363 2488 ntAPPRIS P4 TSL 1 (best) BASIC4.95□□□□□ -1.62
CCDC87Q9NVE4 ZBTB26-202ENST00000373656 4443 ntAPPRIS P1 TSL 1 (best) BASIC4.95□□□□□ -1.62
CCDC87Q9NVE4 RNU6-874P-201ENST00000362390 105 ntBASIC4.95□□□□□ -1.62
CCDC87Q9NVE4 RNU6-37P-201ENST00000362692 107 ntBASIC4.95□□□□□ -1.62
CCDC87Q9NVE4 RNU6-11P-201ENST00000364234 107 ntBASIC4.95□□□□□ -1.62
CCDC87Q9NVE4 SNORD14B-201ENST00000364533 90 ntBASIC4.95□□□□□ -1.62
CCDC87Q9NVE4 RNU6-7-201ENST00000364784 107 ntBASIC4.95□□□□□ -1.62
CCDC87Q9NVE4 RNU6-8-201ENST00000365467 107 ntBASIC4.95□□□□□ -1.62
CCDC87Q9NVE4 RNU6-25P-201ENST00000383873 107 ntBASIC4.95□□□□□ -1.62
CCDC87Q9NVE4 RNU6-1-201ENST00000383898 107 ntBASIC4.95□□□□□ -1.62
CCDC87Q9NVE4 RNU6-48P-201ENST00000384161 107 ntBASIC4.95□□□□□ -1.62
CCDC87Q9NVE4 RNU6-36P-201ENST00000384172 107 ntBASIC4.95□□□□□ -1.62
CCDC87Q9NVE4 RNU6-4P-201ENST00000384205 107 ntBASIC4.95□□□□□ -1.62
CCDC87Q9NVE4 RNU6-5P-201ENST00000384238 107 ntBASIC4.95□□□□□ -1.62
CCDC87Q9NVE4 RNU6-3P-201ENST00000384314 107 ntBASIC4.95□□□□□ -1.62
CCDC87Q9NVE4 RNU6-16P-201ENST00000384385 107 ntBASIC4.95□□□□□ -1.62
CCDC87Q9NVE4 RNU6-15P-201ENST00000384534 107 ntBASIC4.95□□□□□ -1.62
CCDC87Q9NVE4 RNU6-2-201ENST00000384627 107 ntBASIC4.95□□□□□ -1.62
CCDC87Q9NVE4 RNU6-29P-201ENST00000384637 107 ntBASIC4.95□□□□□ -1.62
CCDC87Q9NVE4 RNU6-9-201ENST00000384776 107 ntBASIC4.95□□□□□ -1.62
CCDC87Q9NVE4 RNU6-33P-201ENST00000384793 107 ntBASIC4.95□□□□□ -1.62
CCDC87Q9NVE4 TRAJ16-201ENST00000390521 60 ntAPPRIS P1 BASIC4.95□□□□□ -1.62
CCDC87Q9NVE4 RNU2-33P-201ENST00000410344 192 ntBASIC4.95□□□□□ -1.62
CCDC87Q9NVE4 RN7SKP58-201ENST00000411010 305 ntBASIC4.95□□□□□ -1.62
CCDC87Q9NVE4 AC009310.1-201ENST00000414414 451 ntBASIC4.95□□□□□ -1.62
CCDC87Q9NVE4 CYCSP35-201ENST00000451978 304 ntBASIC4.95□□□□□ -1.62
CCDC87Q9NVE4 AC132825.2-201ENST00000483901 504 ntTSL 5 BASIC4.95□□□□□ -1.62
CCDC87Q9NVE4 RN7SKP18-201ENST00000516005 275 ntBASIC4.95□□□□□ -1.62
CCDC87Q9NVE4 AC002558.3-201ENST00000574021 401 ntTSL 3 BASIC4.95□□□□□ -1.62
CCDC87Q9NVE4 AC009271.1-202ENST00000588803 492 ntTSL 3 BASIC4.95□□□□□ -1.62
CCDC87Q9NVE4 AC244505.7-201ENST00000599675 272 ntBASIC4.95□□□□□ -1.62
CCDC87Q9NVE4 RNU6-6P-201ENST00000606623 107 ntBASIC4.95□□□□□ -1.62
CCDC87Q9NVE4 AL442067.1-201ENST00000613261 223 ntBASIC4.95□□□□□ -1.62
CCDC87Q9NVE4 HIKESHI-208ENST00000618164 499 ntTSL 5 BASIC4.95□□□□□ -1.62
CCDC87Q9NVE4 ZNF299P-201ENST00000406845 1804 ntBASIC4.95□□□□□ -1.62
CCDC87Q9NVE4 NCAPGP1-201ENST00000505112 1814 ntBASIC4.95□□□□□ -1.62
CCDC87Q9NVE4 USP34-201ENST00000398571 11357 ntAPPRIS P1 TSL 5 BASIC4.95□□□□□ -1.62
CCDC87Q9NVE4 KBTBD3-207ENST00000534815 3396 ntTSL 5 BASIC4.95□□□□□ -1.62
CCDC87Q9NVE4 NUTM2B-AS1-213ENST00000619625 7611 ntTSL 2 BASIC4.94□□□□□ -1.62
CCDC87Q9NVE4 CRISP1-202ENST00000335847 1911 ntAPPRIS P1 TSL 1 (best) BASIC4.94□□□□□ -1.62
CCDC87Q9NVE4 Y_RNA.48-201ENST00000362710 103 ntBASIC4.94□□□□□ -1.62
CCDC87Q9NVE4 Y_RNA.210-201ENST00000364161 110 ntBASIC4.94□□□□□ -1.62
CCDC87Q9NVE4 DEFB109C-201ENST00000382575 264 ntBASIC4.94□□□□□ -1.62
CCDC87Q9NVE4 DEFB109B-201ENST00000382656 264 ntBASIC4.94□□□□□ -1.62
CCDC87Q9NVE4 Y_RNA.489-201ENST00000384410 101 ntBASIC4.94□□□□□ -1.62
CCDC87Q9NVE4 Y_RNA.551-201ENST00000384661 102 ntBASIC4.94□□□□□ -1.62
CCDC87Q9NVE4 RNU6-713P-201ENST00000384761 107 ntBASIC4.94□□□□□ -1.62
CCDC87Q9NVE4 MIR1251-201ENST00000408552 70 ntBASIC4.94□□□□□ -1.62
CCDC87Q9NVE4 RNA5SP146-201ENST00000410743 123 ntBASIC4.94□□□□□ -1.62
CCDC87Q9NVE4 LHFPL3-AS1-203ENST00000417290 950 ntTSL 1 (best) BASIC4.94□□□□□ -1.62
CCDC87Q9NVE4 AC020594.1-201ENST00000437680 338 ntTSL 3 BASIC4.94□□□□□ -1.62
CCDC87Q9NVE4 CPHL1P-203ENST00000471823 523 ntTSL 5 BASIC4.94□□□□□ -1.62
CCDC87Q9NVE4 AC113192.5-201ENST00000528779 486 ntTSL 2 BASIC4.94□□□□□ -1.62
CCDC87Q9NVE4 CACNA1C-IT2-201ENST00000541871 589 ntTSL 2 BASIC4.94□□□□□ -1.62
CCDC87Q9NVE4 AC004024.1-201ENST00000549244 247 ntBASIC4.94□□□□□ -1.62
CCDC87Q9NVE4 AC018554.1-202ENST00000565133 444 ntTSL 3 BASIC4.94□□□□□ -1.62
CCDC87Q9NVE4 AC009314.1-201ENST00000603871 304 ntBASIC4.94□□□□□ -1.62
CCDC87Q9NVE4 MIR8076-201ENST00000611401 83 ntBASIC4.94□□□□□ -1.62
CCDC87Q9NVE4 AL138686.1-201ENST00000612699 315 ntTSL 3 BASIC4.94□□□□□ -1.62
CCDC87Q9NVE4 MIR8062-201ENST00000621515 85 ntBASIC4.94□□□□□ -1.62
CCDC87Q9NVE4 SERPINA7-201ENST00000327674 2642 ntAPPRIS P1 TSL 1 (best) BASIC4.94□□□□□ -1.62
CCDC87Q9NVE4 CENPF-201ENST00000366955 10307 ntAPPRIS P1 TSL 1 (best) BASIC4.94□□□□□ -1.62
CCDC87Q9NVE4 DOCK7-202ENST00000340370 6731 ntAPPRIS P3 TSL 2 BASIC4.94□□□□□ -1.62
CCDC87Q9NVE4 CRB1-201ENST00000367397 9023 ntTSL 2 BASIC4.94□□□□□ -1.62
CCDC87Q9NVE4 GPRC6A-203ENST00000530250 2310 ntTSL 1 (best) BASIC4.94□□□□□ -1.62
CCDC87Q9NVE4 ADGRL2-201ENST00000319517 5479 ntAPPRIS P2 TSL 1 (best) BASIC4.93□□□□□ -1.62
CCDC87Q9NVE4 CFTR-201ENST00000003084 6132 ntAPPRIS P1 TSL 1 (best) BASIC4.93□□□□□ -1.62
CCDC87Q9NVE4 RNU6-1317P-201ENST00000364582 104 ntBASIC4.93□□□□□ -1.62
CCDC87Q9NVE4 RNU6-26P-201ENST00000383985 107 ntBASIC4.93□□□□□ -1.62
CCDC87Q9NVE4 MIR34A-201ENST00000385130 110 ntBASIC4.93□□□□□ -1.62
CCDC87Q9NVE4 SNORA3C-201ENST00000408792 125 ntBASIC4.93□□□□□ -1.62
CCDC87Q9NVE4 MTCO3P19-201ENST00000415864 321 ntBASIC4.93□□□□□ -1.62
CCDC87Q9NVE4 MTCO3P8-201ENST00000453691 755 ntBASIC4.93□□□□□ -1.62
CCDC87Q9NVE4 LINC02540-201ENST00000455554 570 ntTSL 3 BASIC4.93□□□□□ -1.62
CCDC87Q9NVE4 PTP4A2-203ENST00000470404 575 ntTSL 3 BASIC4.93□□□□□ -1.62
CCDC87Q9NVE4 FO393415.2-201ENST00000480085 343 ntBASIC4.93□□□□□ -1.62
CCDC87Q9NVE4 LINC02120-201ENST00000505518 2008 ntTSL 1 (best) BASIC4.93□□□□□ -1.62
CCDC87Q9NVE4 RNU6-911P-201ENST00000516523 104 ntBASIC4.93□□□□□ -1.62
CCDC87Q9NVE4 MAFTRR-204ENST00000568389 506 ntTSL 4 BASIC4.93□□□□□ -1.62
CCDC87Q9NVE4 ZNF404-202ENST00000587539 1851 ntAPPRIS P2 TSL 5 BASIC4.93□□□□□ -1.62
CCDC87Q9NVE4 Z84484.1-202ENST00000612718 60 ntTSL 5 BASIC4.93□□□□□ -1.62
CCDC87Q9NVE4 AC090132.2-201ENST00000615881 347 ntBASIC4.93□□□□□ -1.62
CCDC87Q9NVE4 NKTR-219ENST00000617821 7319 ntTSL 5 BASIC4.93□□□□□ -1.62
CCDC87Q9NVE4 AC092435.4-201ENST00000623012 4159 ntBASIC4.93□□□□□ -1.62
CCDC87Q9NVE4 OBSCN-204ENST00000366707 26772 ntAPPRIS P1 TSL 5 BASIC4.93□□□□□ -1.62
CCDC87Q9NVE4 ZFYVE16-201ENST00000338008 6773 ntAPPRIS P1 TSL 1 (best) BASIC4.92□□□□□ -1.62
CCDC87Q9NVE4 CNTRL-201ENST00000238341 7431 ntAPPRIS P1 TSL 1 (best) BASIC4.92□□□□□ -1.62
CCDC87Q9NVE4 SCN1A-202ENST00000375405 8097 ntAPPRIS P3 TSL 5 BASIC4.92□□□□□ -1.62
CCDC87Q9NVE4 AC024940.1-206ENST00000632817 4299 ntAPPRIS P5 TSL 5 BASIC4.92□□□□□ -1.62
CCDC87Q9NVE4 AC007685.1-201ENST00000329806 452 ntBASIC4.92□□□□□ -1.62
Retrieved 100 of 98,524 protein–RNA pairs in 103.7 ms