Protein–RNA interactions for Protein: Q9NUL7

DDX28, Probable ATP-dependent RNA helicase DDX28, humanhuman

Known RBP Predictions only

Length 540 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DDX28Q9NUL7 KRTAP19-11P-201ENST00000439851 104 ntBASIC2.44□□□□□ -2.02
DDX28Q9NUL7 AC244505.5-201ENST00000443639 207 ntBASIC2.44□□□□□ -2.02
DDX28Q9NUL7 AC104389.3-201ENST00000445629 235 ntBASIC2.44□□□□□ -2.02
DDX28Q9NUL7 MTND1P27-201ENST00000451117 902 ntBASIC2.44□□□□□ -2.02
DDX28Q9NUL7 AC234781.5-202ENST00000453508 426 ntTSL 3 BASIC2.44□□□□□ -2.02
DDX28Q9NUL7 RPS29P26-201ENST00000477483 171 ntBASIC2.44□□□□□ -2.02
DDX28Q9NUL7 AC091826.1-201ENST00000514065 313 ntBASIC2.44□□□□□ -2.02
DDX28Q9NUL7 RNU6-581P-201ENST00000516214 105 ntBASIC2.44□□□□□ -2.02
DDX28Q9NUL7 RNA5SP82-201ENST00000516707 92 ntBASIC2.44□□□□□ -2.02
DDX28Q9NUL7 RNU6-410P-201ENST00000517006 107 ntBASIC2.44□□□□□ -2.02
DDX28Q9NUL7 AF117829.1-204ENST00000519854 284 ntTSL 3 BASIC2.44□□□□□ -2.02
DDX28Q9NUL7 MIR4672-201ENST00000583126 81 ntBASIC2.44□□□□□ -2.02
DDX28Q9NUL7 MIR3616-201ENST00000584070 92 ntBASIC2.44□□□□□ -2.02
DDX28Q9NUL7 ZNF861P-201ENST00000588126 639 ntBASIC2.44□□□□□ -2.02
DDX28Q9NUL7 AL033523.1-201ENST00000605153 153 ntBASIC2.44□□□□□ -2.02
DDX28Q9NUL7 MIR98-201ENST00000606724 119 ntBASIC2.44□□□□□ -2.02
DDX28Q9NUL7 AC126118.1-201ENST00000607744 628 ntBASIC2.44□□□□□ -2.02
DDX28Q9NUL7 SMIM2-AS1-204ENST00000619472 746 ntTSL 3 BASIC2.44□□□□□ -2.02
DDX28Q9NUL7 MTND5P17-201ENST00000418405 1603 ntBASIC2.43□□□□□ -2.02
DDX28Q9NUL7 XPO4-202ENST00000400602 9884 ntAPPRIS ALT1 TSL 5 BASIC2.43□□□□□ -2.02
DDX28Q9NUL7 AL136360.1-201ENST00000503377 1900 ntBASIC2.43□□□□□ -2.02
DDX28Q9NUL7 MIR449A-201ENST00000362113 91 ntBASIC2.43□□□□□ -2.02
DDX28Q9NUL7 RNU6-1097P-201ENST00000363586 107 ntBASIC2.43□□□□□ -2.02
DDX28Q9NUL7 RNU6-1280P-201ENST00000365211 107 ntBASIC2.43□□□□□ -2.02
DDX28Q9NUL7 MDM4-202ENST00000367180 547 ntTSL 3 BASIC2.43□□□□□ -2.02
DDX28Q9NUL7 BCL2L15-203ENST00000393320 276 ntTSL 1 (best) BASIC2.43□□□□□ -2.02
DDX28Q9NUL7 CISD1P1-201ENST00000393907 327 ntBASIC2.43□□□□□ -2.02
DDX28Q9NUL7 RNU6-1328P-201ENST00000410938 106 ntBASIC2.43□□□□□ -2.02
DDX28Q9NUL7 RN7SKP284-201ENST00000411002 343 ntBASIC2.43□□□□□ -2.02
DDX28Q9NUL7 RNA5SP184-201ENST00000411071 108 ntBASIC2.43□□□□□ -2.02
DDX28Q9NUL7 LINC00301-202ENST00000412599 772 ntTSL 1 (best) BASIC2.43□□□□□ -2.02
DDX28Q9NUL7 BX295541.1-201ENST00000417774 250 ntBASIC2.43□□□□□ -2.02
DDX28Q9NUL7 PIGFP2-201ENST00000421400 651 ntBASIC2.43□□□□□ -2.02
DDX28Q9NUL7 AL445123.1-201ENST00000422023 446 ntTSL 2 BASIC2.43□□□□□ -2.02
DDX28Q9NUL7 PTGES3P4-201ENST00000426243 356 ntBASIC2.43□□□□□ -2.02
DDX28Q9NUL7 GPR143P-201ENST00000434155 205 ntBASIC2.43□□□□□ -2.02
DDX28Q9NUL7 FTH1P25-201ENST00000447665 469 ntBASIC2.43□□□□□ -2.02
DDX28Q9NUL7 AC092001.1-201ENST00000453012 261 ntBASIC2.43□□□□□ -2.02
DDX28Q9NUL7 LINC00571-203ENST00000454060 525 ntTSL 3 BASIC2.43□□□□□ -2.02
DDX28Q9NUL7 RPS27P27-201ENST00000498779 255 ntBASIC2.43□□□□□ -2.02
DDX28Q9NUL7 EIF4EP3-201ENST00000498782 656 ntBASIC2.43□□□□□ -2.02
DDX28Q9NUL7 AC105389.2-201ENST00000506475 435 ntTSL 3 BASIC2.43□□□□□ -2.02
DDX28Q9NUL7 AC104663.1-201ENST00000508555 557 ntTSL 2 BASIC2.43□□□□□ -2.02
DDX28Q9NUL7 AC079349.1-201ENST00000509096 589 ntTSL 2 BASIC2.43□□□□□ -2.02
DDX28Q9NUL7 LINC00824-201ENST00000517583 805 ntTSL 5 BASIC2.43□□□□□ -2.02
DDX28Q9NUL7 AC025871.1-201ENST00000523935 443 ntTSL 2 BASIC2.43□□□□□ -2.02
DDX28Q9NUL7 MTCYBP20-201ENST00000524239 1129 ntBASIC2.43□□□□□ -2.02
DDX28Q9NUL7 MIR4435-1-201ENST00000582552 80 ntBASIC2.43□□□□□ -2.02
DDX28Q9NUL7 MIR3124-201ENST00000582636 67 ntBASIC2.43□□□□□ -2.02
DDX28Q9NUL7 AC008521.1-201ENST00000587471 187 ntBASIC2.43□□□□□ -2.02
DDX28Q9NUL7 AC022335.1-204ENST00000590779 600 ntAPPRIS ALT2 TSL 2 BASIC2.43□□□□□ -2.02
DDX28Q9NUL7 AC040904.1-201ENST00000590850 223 ntBASIC2.43□□□□□ -2.02
DDX28Q9NUL7 AC109347.2-201ENST00000610220 349 ntBASIC2.43□□□□□ -2.02
DDX28Q9NUL7 AL137847.3-201ENST00000611521 109 ntBASIC2.43□□□□□ -2.02
DDX28Q9NUL7 uc_338.14-201ENST00000613162 166 ntBASIC2.43□□□□□ -2.02
DDX28Q9NUL7 HMGB1P24-202ENST00000615653 685 ntBASIC2.43□□□□□ -2.02
DDX28Q9NUL7 AC072046.2-201ENST00000618366 268 ntBASIC2.43□□□□□ -2.02
DDX28Q9NUL7 AC025034.2-201ENST00000623264 286 ntBASIC2.43□□□□□ -2.02
DDX28Q9NUL7 CR381653.2-201ENST00000624041 768 ntBASIC2.43□□□□□ -2.02
DDX28Q9NUL7 AL157786.1-207ENST00000627771 695 ntBASIC2.43□□□□□ -2.02
DDX28Q9NUL7 CD44-239ENST00000639002 528 ntTSL 1 (best) BASIC2.43□□□□□ -2.02
DDX28Q9NUL7 SERPINI2-202ENST00000461846 1514 ntAPPRIS P1 TSL 1 (best) BASIC2.42□□□□□ -2.02
DDX28Q9NUL7 PARPBP-203ENST00000392911 1916 ntTSL 5 BASIC2.42□□□□□ -2.02
DDX28Q9NUL7 DDIAS-201ENST00000329143 3367 ntAPPRIS P2 TSL 1 (best) BASIC2.42□□□□□ -2.02
DDX28Q9NUL7 ZNF567-201ENST00000360729 2691 ntTSL 1 (best) BASIC2.42□□□□□ -2.02
DDX28Q9NUL7 RNU6-108P-201ENST00000365558 107 ntBASIC2.42□□□□□ -2.02
DDX28Q9NUL7 IVNS1ABP-201ENST00000367497 746 ntTSL 5 BASIC2.42□□□□□ -2.02
DDX28Q9NUL7 MIR518D-201ENST00000385014 87 ntBASIC2.42□□□□□ -2.02
DDX28Q9NUL7 AC002456.1-201ENST00000415965 317 ntTSL 5 BASIC2.42□□□□□ -2.02
DDX28Q9NUL7 AC104777.3-201ENST00000416350 545 ntTSL 3 BASIC2.42□□□□□ -2.02
DDX28Q9NUL7 MICF-203ENST00000432679 129 ntBASIC2.42□□□□□ -2.02
DDX28Q9NUL7 LINC02195-201ENST00000443373 294 ntTSL 3 BASIC2.42□□□□□ -2.02
DDX28Q9NUL7 RPL32P28-201ENST00000443577 397 ntBASIC2.42□□□□□ -2.02
DDX28Q9NUL7 USP9YP29-201ENST00000445112 563 ntBASIC2.42□□□□□ -2.02
DDX28Q9NUL7 AL078581.2-201ENST00000446392 378 ntTSL 3 BASIC2.42□□□□□ -2.02
DDX28Q9NUL7 MTCYBP1-201ENST00000454315 1119 ntBASIC2.42□□□□□ -2.02
DDX28Q9NUL7 BTF3P15-201ENST00000455606 336 ntBASIC2.42□□□□□ -2.02
DDX28Q9NUL7 RNU7-26P-201ENST00000458980 63 ntBASIC2.42□□□□□ -2.02
DDX28Q9NUL7 SRIP1-201ENST00000489235 288 ntBASIC2.42□□□□□ -2.02
DDX28Q9NUL7 AC023194.1-201ENST00000493084 308 ntBASIC2.42□□□□□ -2.02
DDX28Q9NUL7 AC023794.1-201ENST00000504210 403 ntTSL 2 BASIC2.42□□□□□ -2.02
DDX28Q9NUL7 RBBP4P6-201ENST00000508098 202 ntBASIC2.42□□□□□ -2.02
DDX28Q9NUL7 AC116655.1-201ENST00000508324 901 ntBASIC2.42□□□□□ -2.02
DDX28Q9NUL7 LINC02500-201ENST00000512547 493 ntTSL 3 BASIC2.42□□□□□ -2.02
DDX28Q9NUL7 AC108727.1-201ENST00000513802 393 ntTSL 2 BASIC2.42□□□□□ -2.02
DDX28Q9NUL7 SNORA31.6-201ENST00000516241 130 ntBASIC2.42□□□□□ -2.02
DDX28Q9NUL7 AC100768.1-201ENST00000525512 506 ntTSL 3 BASIC2.42□□□□□ -2.02
DDX28Q9NUL7 AP001646.1-201ENST00000527936 915 ntBASIC2.42□□□□□ -2.02
DDX28Q9NUL7 AC013417.1-201ENST00000549896 271 ntTSL 5 BASIC2.42□□□□□ -2.02
DDX28Q9NUL7 AC234778.2-201ENST00000566241 354 ntBASIC2.42□□□□□ -2.02
DDX28Q9NUL7 MIR3162-201ENST00000581818 82 ntBASIC2.42□□□□□ -2.02
DDX28Q9NUL7 AC011890.2-201ENST00000613393 294 ntBASIC2.42□□□□□ -2.02
DDX28Q9NUL7 AC245884.12-201ENST00000615364 59 ntBASIC2.42□□□□□ -2.02
DDX28Q9NUL7 NCRUPAR_2.1-201ENST00000616308 99 ntBASIC2.42□□□□□ -2.02
DDX28Q9NUL7 AC093648.1-201ENST00000623546 606 ntBASIC2.42□□□□□ -2.02
DDX28Q9NUL7 HMHB1-202ENST00000638299 126 ntAPPRIS P2 TSL 1 (best) BASIC2.42□□□□□ -2.02
DDX28Q9NUL7 NANOGNB-202ENST00000640040 824 ntAPPRIS ALT2 TSL 5 BASIC2.42□□□□□ -2.02
DDX28Q9NUL7 IL33-202ENST00000417746 2327 ntTSL 2 BASIC2.42□□□□□ -2.02
DDX28Q9NUL7 SLC39A10-201ENST00000359634 5322 ntAPPRIS P1 TSL 1 (best) BASIC2.42□□□□□ -2.02
DDX28Q9NUL7 CBLL1-201ENST00000222597 2003 ntAPPRIS ALT1 TSL 1 (best) BASIC2.42□□□□□ -2.02
Retrieved 100 of 98,524 protein–RNA pairs in 118.1 ms