Protein–RNA interactions for Protein: Q9H4Z3

PCIF1, Phosphorylated CTD-interacting factor 1, humanhuman

Predictions only

Length 704 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCIF1Q9H4Z3 RNU6-25P-201ENST00000383873 107 ntBASIC3.92□□□□□ -1.78
PCIF1Q9H4Z3 RNU6-1-201ENST00000383898 107 ntBASIC3.92□□□□□ -1.78
PCIF1Q9H4Z3 RNU6-48P-201ENST00000384161 107 ntBASIC3.92□□□□□ -1.78
PCIF1Q9H4Z3 RNU6-36P-201ENST00000384172 107 ntBASIC3.92□□□□□ -1.78
PCIF1Q9H4Z3 RNU6-4P-201ENST00000384205 107 ntBASIC3.92□□□□□ -1.78
PCIF1Q9H4Z3 RNU6-5P-201ENST00000384238 107 ntBASIC3.92□□□□□ -1.78
PCIF1Q9H4Z3 RNU6-3P-201ENST00000384314 107 ntBASIC3.92□□□□□ -1.78
PCIF1Q9H4Z3 RNU6-16P-201ENST00000384385 107 ntBASIC3.92□□□□□ -1.78
PCIF1Q9H4Z3 RNU6-15P-201ENST00000384534 107 ntBASIC3.92□□□□□ -1.78
PCIF1Q9H4Z3 RNU6-1160P-201ENST00000384546 104 ntBASIC3.92□□□□□ -1.78
PCIF1Q9H4Z3 RNU6-2-201ENST00000384627 107 ntBASIC3.92□□□□□ -1.78
PCIF1Q9H4Z3 RNU6-29P-201ENST00000384637 107 ntBASIC3.92□□□□□ -1.78
PCIF1Q9H4Z3 RNU6-9-201ENST00000384776 107 ntBASIC3.92□□□□□ -1.78
PCIF1Q9H4Z3 RNU6-33P-201ENST00000384793 107 ntBASIC3.92□□□□□ -1.78
PCIF1Q9H4Z3 MIR10A-201ENST00000385043 110 ntBASIC3.92□□□□□ -1.78
PCIF1Q9H4Z3 SNORA75.6-201ENST00000391318 127 ntBASIC3.92□□□□□ -1.78
PCIF1Q9H4Z3 RPL23AP48-201ENST00000406913 488 ntBASIC3.92□□□□□ -1.78
PCIF1Q9H4Z3 MORN2-203ENST00000409131 544 ntTSL 5 BASIC3.92□□□□□ -1.78
PCIF1Q9H4Z3 ATP5A1P2-201ENST00000412323 255 ntBASIC3.92□□□□□ -1.78
PCIF1Q9H4Z3 AC007560.1-201ENST00000426912 237 ntBASIC3.92□□□□□ -1.78
PCIF1Q9H4Z3 LINC01757-201ENST00000435552 480 ntTSL 2 BASIC3.92□□□□□ -1.78
PCIF1Q9H4Z3 RPL21P23-201ENST00000446654 460 ntBASIC3.92□□□□□ -1.78
PCIF1Q9H4Z3 AL133547.1-201ENST00000448546 220 ntBASIC3.92□□□□□ -1.78
PCIF1Q9H4Z3 SNORA84-201ENST00000459229 133 ntBASIC3.92□□□□□ -1.78
PCIF1Q9H4Z3 RNU6-976P-201ENST00000516086 111 ntBASIC3.92□□□□□ -1.78
PCIF1Q9H4Z3 RNA5SP384-201ENST00000516615 116 ntBASIC3.92□□□□□ -1.78
PCIF1Q9H4Z3 AC105999.1-201ENST00000518722 473 ntTSL 3 BASIC3.92□□□□□ -1.78
PCIF1Q9H4Z3 IGKV2D-19-201ENST00000523346 262 ntBASIC3.92□□□□□ -1.78
PCIF1Q9H4Z3 AC104237.1-201ENST00000527443 539 ntTSL 4 BASIC3.92□□□□□ -1.78
PCIF1Q9H4Z3 CACNA1C-IT2-201ENST00000541871 589 ntTSL 2 BASIC3.92□□□□□ -1.78
PCIF1Q9H4Z3 AP005264.4-201ENST00000592203 422 ntTSL 5 BASIC3.92□□□□□ -1.78
PCIF1Q9H4Z3 RNU6-6P-201ENST00000606623 107 ntBASIC3.92□□□□□ -1.78
PCIF1Q9H4Z3 AC116312.1-201ENST00000606841 314 ntBASIC3.92□□□□□ -1.78
PCIF1Q9H4Z3 AC034229.5-201ENST00000624258 185 ntBASIC3.92□□□□□ -1.78
PCIF1Q9H4Z3 Z69720.2-201ENST00000624755 279 ntBASIC3.92□□□□□ -1.78
PCIF1Q9H4Z3 TEX41-300ENST00000631048 69 ntTSL 5 BASIC3.92□□□□□ -1.78
PCIF1Q9H4Z3 AL034408.1-202ENST00000636088 415 ntBASIC3.92□□□□□ -1.78
PCIF1Q9H4Z3 C2orf78-201ENST00000409561 3045 ntAPPRIS P1 TSL 2 BASIC3.92□□□□□ -1.78
PCIF1Q9H4Z3 FIGNL1-201ENST00000356889 3471 ntAPPRIS P1 TSL 1 (best) BASIC3.92□□□□□ -1.78
PCIF1Q9H4Z3 ZNF483-201ENST00000309235 3655 ntAPPRIS P1 TSL 1 (best) BASIC3.92□□□□□ -1.78
PCIF1Q9H4Z3 FIGNL1-203ENST00000419119 3700 ntAPPRIS P1 TSL 1 (best) BASIC3.92□□□□□ -1.78
PCIF1Q9H4Z3 TLR8-202ENST00000311912 3367 ntAPPRIS P4 TSL 1 (best) BASIC3.91□□□□□ -1.78
PCIF1Q9H4Z3 C1orf112-203ENST00000413811 2661 ntAPPRIS ALT2 TSL 1 (best) BASIC3.91□□□□□ -1.78
PCIF1Q9H4Z3 IDE-202ENST00000371581 4480 ntTSL 2 BASIC3.91□□□□□ -1.78
PCIF1Q9H4Z3 RNU6-283P-201ENST00000364788 107 ntBASIC3.91□□□□□ -1.78
PCIF1Q9H4Z3 RNU6-842P-201ENST00000384269 107 ntBASIC3.91□□□□□ -1.78
PCIF1Q9H4Z3 RNU6-140P-201ENST00000384566 108 ntBASIC3.91□□□□□ -1.78
PCIF1Q9H4Z3 TRAJ40-201ENST00000390497 61 ntAPPRIS P1 BASIC3.91□□□□□ -1.78
PCIF1Q9H4Z3 AL030996.1-201ENST00000411430 235 ntBASIC3.91□□□□□ -1.78
PCIF1Q9H4Z3 RAC1P3-201ENST00000416129 580 ntBASIC3.91□□□□□ -1.78
PCIF1Q9H4Z3 AL096701.2-201ENST00000416920 238 ntBASIC3.91□□□□□ -1.78
PCIF1Q9H4Z3 U51244.1-201ENST00000423120 374 ntTSL 3 BASIC3.91□□□□□ -1.78
PCIF1Q9H4Z3 AC098614.2-201ENST00000426040 255 ntBASIC3.91□□□□□ -1.78
PCIF1Q9H4Z3 RPS6P12-201ENST00000432491 726 ntBASIC3.91□□□□□ -1.78
PCIF1Q9H4Z3 AL078601.1-201ENST00000444542 271 ntBASIC3.91□□□□□ -1.78
PCIF1Q9H4Z3 FTH1P25-201ENST00000447665 469 ntBASIC3.91□□□□□ -1.78
PCIF1Q9H4Z3 MTND5P30-201ENST00000452896 1731 ntBASIC3.91□□□□□ -1.78
PCIF1Q9H4Z3 AC092798.1-201ENST00000458542 409 ntBASIC3.91□□□□□ -1.78
PCIF1Q9H4Z3 AC084357.1-201ENST00000473404 255 ntBASIC3.91□□□□□ -1.78
PCIF1Q9H4Z3 LEKR1-205ENST00000477399 621 ntTSL 2 BASIC3.91□□□□□ -1.78
PCIF1Q9H4Z3 RN7SKP18-201ENST00000516005 275 ntBASIC3.91□□□□□ -1.78
PCIF1Q9H4Z3 SCARNA16.2-201ENST00000516520 172 ntBASIC3.91□□□□□ -1.78
PCIF1Q9H4Z3 MIR2114-201ENST00000516645 80 ntBASIC3.91□□□□□ -1.78
PCIF1Q9H4Z3 TRAV32-201ENST00000553993 340 ntBASIC3.91□□□□□ -1.78
PCIF1Q9H4Z3 LINC01897-203ENST00000591503 369 ntTSL 2 BASIC3.91□□□□□ -1.78
PCIF1Q9H4Z3 AL355802.3-201ENST00000607571 545 ntBASIC3.91□□□□□ -1.78
PCIF1Q9H4Z3 AC011890.2-201ENST00000613393 294 ntBASIC3.91□□□□□ -1.78
PCIF1Q9H4Z3 HOXA11-AS1_4.1-201ENST00000620901 233 ntBASIC3.91□□□□□ -1.78
PCIF1Q9H4Z3 AC099506.2-201ENST00000623074 221 ntBASIC3.91□□□□□ -1.78
PCIF1Q9H4Z3 HEATR5B-201ENST00000233099 6905 ntAPPRIS P1 TSL 1 (best) BASIC3.91□□□□□ -1.78
PCIF1Q9H4Z3 ZNF85-201ENST00000300540 1531 ntTSL 1 (best) BASIC3.9□□□□□ -1.78
PCIF1Q9H4Z3 HSP90AA4P-202ENST00000506915 2228 ntBASIC3.9□□□□□ -1.78
PCIF1Q9H4Z3 GEN1-201ENST00000317402 9854 ntAPPRIS P1 TSL 2 BASIC3.9□□□□□ -1.78
PCIF1Q9H4Z3 BIRC3-201ENST00000263464 5197 ntAPPRIS P1 TSL 1 (best) BASIC3.9□□□□□ -1.79
PCIF1Q9H4Z3 AL161668.1-201ENST00000320322 358 ntTSL 1 (best) BASIC3.9□□□□□ -1.79
PCIF1Q9H4Z3 FTLP6-201ENST00000355274 422 ntBASIC3.9□□□□□ -1.79
PCIF1Q9H4Z3 Y_RNA.28-201ENST00000362554 111 ntBASIC3.9□□□□□ -1.79
PCIF1Q9H4Z3 SNORA62.3-201ENST00000365110 153 ntBASIC3.9□□□□□ -1.79
PCIF1Q9H4Z3 C1orf100-202ENST00000366537 483 ntTSL 1 (best) BASIC3.9□□□□□ -1.79
PCIF1Q9H4Z3 RNU6-331P-201ENST00000384724 107 ntBASIC3.9□□□□□ -1.79
PCIF1Q9H4Z3 RNU6-325P-201ENST00000411132 105 ntBASIC3.9□□□□□ -1.79
PCIF1Q9H4Z3 AC106873.1-201ENST00000420664 459 ntTSL 3 BASIC3.9□□□□□ -1.79
PCIF1Q9H4Z3 USMG5P1-201ENST00000425964 177 ntBASIC3.9□□□□□ -1.79
PCIF1Q9H4Z3 AC093151.1-201ENST00000427711 313 ntBASIC3.9□□□□□ -1.79
PCIF1Q9H4Z3 AL133396.1-201ENST00000432048 687 ntBASIC3.9□□□□□ -1.79
PCIF1Q9H4Z3 RPL12P25-201ENST00000455592 494 ntBASIC3.9□□□□□ -1.79
PCIF1Q9H4Z3 AC079340.1-201ENST00000504799 552 ntTSL 4 BASIC3.9□□□□□ -1.79
PCIF1Q9H4Z3 AL159163.1-201ENST00000507747 600 ntAPPRIS P1 TSL 5 BASIC3.9□□□□□ -1.79
PCIF1Q9H4Z3 CRISPLD1-205ENST00000523524 2100 ntTSL 2 BASIC3.9□□□□□ -1.79
PCIF1Q9H4Z3 AC069029.1-201ENST00000558736 263 ntTSL 2 BASIC3.9□□□□□ -1.79
PCIF1Q9H4Z3 AC109446.1-201ENST00000566172 220 ntBASIC3.9□□□□□ -1.79
PCIF1Q9H4Z3 AC099793.1-201ENST00000567538 285 ntTSL 3 BASIC3.9□□□□□ -1.79
PCIF1Q9H4Z3 AL110115.1-201ENST00000614396 364 ntBASIC3.9□□□□□ -1.79
PCIF1Q9H4Z3 PLCE1P1-201ENST00000622094 305 ntBASIC3.9□□□□□ -1.79
PCIF1Q9H4Z3 MBNL1-220ENST00000493459 4205 ntTSL 1 (best) BASIC3.9□□□□□ -1.79
PCIF1Q9H4Z3 UBE3A-202ENST00000397954 2873 ntTSL 5 BASIC3.9□□□□□ -1.79
PCIF1Q9H4Z3 SCEL-202ENST00000377246 3081 ntAPPRIS ALT2 TSL 1 (best) BASIC3.9□□□□□ -1.79
PCIF1Q9H4Z3 ZNF99-202ENST00000596209 7817 ntTSL 5 BASIC3.9□□□□□ -1.79
PCIF1Q9H4Z3 GABRG2-222ENST00000639975 3662 ntTSL 5 BASIC3.9□□□□□ -1.79
PCIF1Q9H4Z3 AP001486.2-201ENST00000561652 5113 ntBASIC3.9□□□□□ -1.79
Retrieved 100 of 98,524 protein–RNA pairs in 141.8 ms