Protein–RNA interactions for Protein: Q96MF4

CCDC140, Coiled-coil domain-containing protein 140, humanhuman

Predictions only

Length 163 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC140Q96MF4 APC-207ENST00000508376 10619 ntAPPRIS P1 TSL 1 (best) BASIC3.65□□□□□ -1.82
CCDC140Q96MF4 IPO5-201ENST00000261574 6003 ntTSL 1 (best) BASIC3.65□□□□□ -1.82
CCDC140Q96MF4 CCDC91-201ENST00000381259 2334 ntAPPRIS P1 TSL 1 (best) BASIC3.65□□□□□ -1.82
CCDC140Q96MF4 C6orf10-209ENST00000612031 2179 ntAPPRIS ALT2 TSL 5 BASIC3.65□□□□□ -1.82
CCDC140Q96MF4 LINC00890-202ENST00000569275 4595 ntAPPRIS P1 TSL 1 (best) BASIC3.65□□□□□ -1.82
CCDC140Q96MF4 PCDH15-211ENST00000395440 3177 ntTSL 5 BASIC3.65□□□□□ -1.83
CCDC140Q96MF4 PLD1-203ENST00000356327 5855 ntAPPRIS P1 TSL 1 (best) BASIC3.65□□□□□ -1.83
CCDC140Q96MF4 AL079305.1-201ENST00000623159 3008 ntBASIC3.65□□□□□ -1.83
CCDC140Q96MF4 Y_RNA.14-201ENST00000362415 103 ntBASIC3.65□□□□□ -1.83
CCDC140Q96MF4 Y_RNA.84-201ENST00000363011 104 ntBASIC3.65□□□□□ -1.83
CCDC140Q96MF4 EI24P2-201ENST00000397776 1076 ntBASIC3.65□□□□□ -1.83
CCDC140Q96MF4 RN7SKP61-201ENST00000410642 295 ntBASIC3.65□□□□□ -1.83
CCDC140Q96MF4 RN7SKP216-201ENST00000411050 312 ntBASIC3.65□□□□□ -1.83
CCDC140Q96MF4 AC078809.1-201ENST00000427601 140 ntBASIC3.65□□□□□ -1.83
CCDC140Q96MF4 AC117462.1-201ENST00000461186 554 ntTSL 4 BASIC3.65□□□□□ -1.83
CCDC140Q96MF4 AP002884.2-201ENST00000471647 395 ntBASIC3.65□□□□□ -1.83
CCDC140Q96MF4 AC126121.2-201ENST00000486137 698 ntTSL 3 BASIC3.65□□□□□ -1.83
CCDC140Q96MF4 RN7SL346P-201ENST00000491561 294 ntBASIC3.65□□□□□ -1.83
CCDC140Q96MF4 AC107222.1-201ENST00000510899 637 ntBASIC3.65□□□□□ -1.83
CCDC140Q96MF4 ABCA17P-206ENST00000512848 467 ntTSL 2 BASIC3.65□□□□□ -1.83
CCDC140Q96MF4 RNU6-1114P-201ENST00000516022 107 ntBASIC3.65□□□□□ -1.83
CCDC140Q96MF4 RNU6-1012P-201ENST00000516606 109 ntBASIC3.65□□□□□ -1.83
CCDC140Q96MF4 AC002428.2-201ENST00000522973 414 ntTSL 3 BASIC3.65□□□□□ -1.83
CCDC140Q96MF4 AC104002.2-201ENST00000553919 318 ntTSL 5 BASIC3.65□□□□□ -1.83
CCDC140Q96MF4 AC092120.1-201ENST00000562211 420 ntTSL 3 BASIC3.65□□□□□ -1.83
CCDC140Q96MF4 AC105137.2-201ENST00000569073 466 ntBASIC3.65□□□□□ -1.83
CCDC140Q96MF4 MIR5571-201ENST00000577998 113 ntBASIC3.65□□□□□ -1.83
CCDC140Q96MF4 LINC02079-201ENST00000582518 294 ntTSL 2 BASIC3.65□□□□□ -1.83
CCDC140Q96MF4 MIR3936-201ENST00000584304 110 ntBASIC3.65□□□□□ -1.83
CCDC140Q96MF4 RNF138P2-201ENST00000603490 592 ntBASIC3.65□□□□□ -1.83
CCDC140Q96MF4 LINC00904-201ENST00000604453 471 ntTSL 2 BASIC3.65□□□□□ -1.83
CCDC140Q96MF4 AL391358.1-201ENST00000605342 190 ntBASIC3.65□□□□□ -1.83
CCDC140Q96MF4 AC008035.1-201ENST00000607353 448 ntTSL 3 BASIC3.65□□□□□ -1.83
CCDC140Q96MF4 CENPF-206ENST00000614578 528 ntTSL 5 BASIC3.65□□□□□ -1.83
CCDC140Q96MF4 AC137590.2-201ENST00000619709 240 ntBASIC3.65□□□□□ -1.83
CCDC140Q96MF4 AL450472.1-202ENST00000637286 180 ntBASIC3.65□□□□□ -1.83
CCDC140Q96MF4 RAPGEF6-210ENST00000512052 3535 ntTSL 2 BASIC3.65□□□□□ -1.83
CCDC140Q96MF4 USP44-201ENST00000258499 4022 ntAPPRIS P1 TSL 1 (best) BASIC3.65□□□□□ -1.83
CCDC140Q96MF4 HAUS6P2-201ENST00000433254 2404 ntBASIC3.65□□□□□ -1.83
CCDC140Q96MF4 CYLD-212ENST00000568704 3292 ntTSL 5 BASIC3.65□□□□□ -1.83
CCDC140Q96MF4 POSTN-210ENST00000541481 3113 ntTSL 1 (best) BASIC3.65□□□□□ -1.83
CCDC140Q96MF4 TCHHL1-201ENST00000368806 3603 ntAPPRIS P1 TSL 1 (best) BASIC3.65□□□□□ -1.83
CCDC140Q96MF4 NEAT1-202ENST00000501122 22743 ntBASIC3.65□□□□□ -1.83
CCDC140Q96MF4 HMBOX1-202ENST00000355231 1694 ntTSL 5 BASIC3.65□□□□□ -1.83
CCDC140Q96MF4 AC018462.1-201ENST00000425966 1684 ntTSL 1 (best) BASIC3.65□□□□□ -1.83
CCDC140Q96MF4 CCSER2-210ENST00000543283 5888 ntTSL 2 BASIC3.65□□□□□ -1.83
CCDC140Q96MF4 HTR2B-201ENST00000258400 2246 ntAPPRIS P1 TSL 1 (best) BASIC3.64□□□□□ -1.83
CCDC140Q96MF4 DMD-207ENST00000378677 13932 ntAPPRIS ALT2 TSL 5 BASIC3.64□□□□□ -1.83
CCDC140Q96MF4 MECOM-219ENST00000628990 4835 ntAPPRIS P3 TSL 1 (best) BASIC3.64□□□□□ -1.83
CCDC140Q96MF4 LRP6-201ENST00000261349 10020 ntAPPRIS P1 TSL 1 (best) BASIC3.64□□□□□ -1.83
CCDC140Q96MF4 SLC17A4-203ENST00000439485 3699 ntTSL 5 BASIC3.64□□□□□ -1.83
CCDC140Q96MF4 LINC02432-202ENST00000509161 2839 ntTSL 2 BASIC3.64□□□□□ -1.83
CCDC140Q96MF4 DMXL2-203ENST00000543779 10400 ntAPPRIS ALT2 TSL 1 (best) BASIC3.64□□□□□ -1.83
CCDC140Q96MF4 MDM2-206ENST00000350057 1401 ntTSL 1 (best) BASIC3.64□□□□□ -1.83
CCDC140Q96MF4 RNA5SP361-201ENST00000362686 118 ntBASIC3.64□□□□□ -1.83
CCDC140Q96MF4 RFX3-203ENST00000381984 364 ntTSL 3 BASIC3.64□□□□□ -1.83
CCDC140Q96MF4 RNU6-318P-201ENST00000384283 103 ntBASIC3.64□□□□□ -1.83
CCDC140Q96MF4 RNU6-937P-201ENST00000384325 106 ntBASIC3.64□□□□□ -1.83
CCDC140Q96MF4 MT-TR-201ENST00000387439 65 ntBASIC3.64□□□□□ -1.83
CCDC140Q96MF4 RNU6ATAC23P-201ENST00000408448 123 ntBASIC3.64□□□□□ -1.83
CCDC140Q96MF4 MIR1271-201ENST00000408537 86 ntBASIC3.64□□□□□ -1.83
CCDC140Q96MF4 Y_RNA.602-201ENST00000410535 92 ntBASIC3.64□□□□□ -1.83
CCDC140Q96MF4 RNU2-25P-201ENST00000411041 191 ntBASIC3.64□□□□□ -1.83
CCDC140Q96MF4 Y_RNA.625-201ENST00000411256 107 ntBASIC3.64□□□□□ -1.83
CCDC140Q96MF4 AL132765.1-201ENST00000434165 553 ntBASIC3.64□□□□□ -1.83
CCDC140Q96MF4 AC005154.2-201ENST00000438110 379 ntBASIC3.64□□□□□ -1.83
CCDC140Q96MF4 AL136164.1-201ENST00000456795 352 ntTSL 3 BASIC3.64□□□□□ -1.83
CCDC140Q96MF4 RPL39P38-201ENST00000467018 153 ntBASIC3.64□□□□□ -1.83
CCDC140Q96MF4 AC108751.2-201ENST00000469993 231 ntBASIC3.64□□□□□ -1.83
CCDC140Q96MF4 Y_RNA.673-201ENST00000516306 88 ntBASIC3.64□□□□□ -1.83
CCDC140Q96MF4 RNU6-58P-201ENST00000517143 103 ntBASIC3.64□□□□□ -1.83
CCDC140Q96MF4 AC016256.1-201ENST00000547971 354 ntBASIC3.64□□□□□ -1.83
CCDC140Q96MF4 uc_338.32-201ENST00000615087 172 ntBASIC3.64□□□□□ -1.83
CCDC140Q96MF4 PAPOLA-202ENST00000392990 2588 ntTSL 5 BASIC3.64□□□□□ -1.83
CCDC140Q96MF4 RALGAPA1-204ENST00000553892 6271 ntTSL 5 BASIC3.64□□□□□ -1.83
CCDC140Q96MF4 DOCK7-211ENST00000634264 6303 ntAPPRIS ALT2 TSL 5 BASIC3.64□□□□□ -1.83
CCDC140Q96MF4 SDAD1P1-202ENST00000524156 2051 ntBASIC3.64□□□□□ -1.83
CCDC140Q96MF4 AC010889.1-201ENST00000566193 2666 ntBASIC3.64□□□□□ -1.83
CCDC140Q96MF4 SLC4A10-206ENST00000446997 5551 ntAPPRIS P4 TSL 1 (best) BASIC3.64□□□□□ -1.83
CCDC140Q96MF4 MEI4-201ENST00000602452 4800 ntAPPRIS P1 TSL 5 BASIC3.64□□□□□ -1.83
CCDC140Q96MF4 CFHR4-202ENST00000367416 2178 ntAPPRIS P1 TSL 2 BASIC3.63□□□□□ -1.83
CCDC140Q96MF4 FAM204A-203ENST00000369183 13889 ntAPPRIS P1 TSL 1 (best) BASIC3.63□□□□□ -1.83
CCDC140Q96MF4 BCHE-201ENST00000264381 2454 ntAPPRIS P1 TSL 1 (best) BASIC3.63□□□□□ -1.83
CCDC140Q96MF4 MAPK10-236ENST00000638313 3971 ntTSL 5 BASIC3.63□□□□□ -1.83
CCDC140Q96MF4 RC3H1-201ENST00000258349 10988 ntAPPRIS P3 TSL 1 (best) BASIC3.63□□□□□ -1.83
CCDC140Q96MF4 APAF1-209ENST00000550527 6581 ntAPPRIS ALT1 TSL 1 (best) BASIC3.63□□□□□ -1.83
CCDC140Q96MF4 AC092268.1-201ENST00000342691 405 ntBASIC3.63□□□□□ -1.83
CCDC140Q96MF4 Y_RNA.257-201ENST00000364596 102 ntBASIC3.63□□□□□ -1.83
CCDC140Q96MF4 U8.10-201ENST00000384260 133 ntBASIC3.63□□□□□ -1.83
CCDC140Q96MF4 MIR147B-201ENST00000390185 80 ntBASIC3.63□□□□□ -1.83
CCDC140Q96MF4 TRAJ35-201ENST00000390502 59 ntAPPRIS P1 BASIC3.63□□□□□ -1.83
CCDC140Q96MF4 SNORD115-46-201ENST00000390982 71 ntBASIC3.63□□□□□ -1.83
CCDC140Q96MF4 RPL23AP48-201ENST00000406913 488 ntBASIC3.63□□□□□ -1.83
CCDC140Q96MF4 LINC01048-201ENST00000414480 511 ntTSL 2 BASIC3.63□□□□□ -1.83
CCDC140Q96MF4 RAC1P3-201ENST00000416129 580 ntBASIC3.63□□□□□ -1.83
CCDC140Q96MF4 AC104462.2-201ENST00000418402 271 ntTSL 3 BASIC3.63□□□□□ -1.83
CCDC140Q96MF4 AC069079.1-201ENST00000419889 400 ntTSL 3 BASIC3.63□□□□□ -1.83
CCDC140Q96MF4 AC012306.1-201ENST00000423267 114 ntBASIC3.63□□□□□ -1.83
CCDC140Q96MF4 AC096920.1-201ENST00000423991 241 ntBASIC3.63□□□□□ -1.83
CCDC140Q96MF4 C4BPAP2-201ENST00000428434 478 ntBASIC3.63□□□□□ -1.83
Retrieved 100 of 98,524 protein–RNA pairs in 122.5 ms