Protein–RNA interactions for Protein: Q8NDQ6

ZNF540, Zinc finger protein 540, humanhuman

Predictions only

Length 660 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF540Q8NDQ6 AC087045.1-201ENST00000605856 382 ntBASIC2.32□□□□□ -2.04
ZNF540Q8NDQ6 RNF219-AS1-205ENST00000605996 792 ntTSL 5 BASIC2.32□□□□□ -2.04
ZNF540Q8NDQ6 AC096772.1-201ENST00000609146 564 ntBASIC2.32□□□□□ -2.04
ZNF540Q8NDQ6 AC023490.1-201ENST00000614584 375 ntTSL 2 BASIC2.32□□□□□ -2.04
ZNF540Q8NDQ6 AC009233.1-201ENST00000616477 371 ntBASIC2.32□□□□□ -2.04
ZNF540Q8NDQ6 AC008121.3-201ENST00000618726 433 ntBASIC2.32□□□□□ -2.04
ZNF540Q8NDQ6 AC011718.1-201ENST00000622906 375 ntTSL 1 (best) BASIC2.32□□□□□ -2.04
ZNF540Q8NDQ6 AF246928.1-201ENST00000623768 87 ntBASIC2.32□□□□□ -2.04
ZNF540Q8NDQ6 AL445523.1-201ENST00000451184 1362 ntBASIC2.32□□□□□ -2.04
ZNF540Q8NDQ6 TBC1D15-210ENST00000485960 2489 ntAPPRIS P1 TSL 1 (best) BASIC2.32□□□□□ -2.04
ZNF540Q8NDQ6 ENAM-201ENST00000396073 5679 ntAPPRIS P1 TSL 1 (best) BASIC2.31□□□□□ -2.04
ZNF540Q8NDQ6 Y_RNA.97-201ENST00000363094 102 ntBASIC2.31□□□□□ -2.04
ZNF540Q8NDQ6 OR51A4-201ENST00000380373 1002 ntAPPRIS P1 BASIC2.31□□□□□ -2.04
ZNF540Q8NDQ6 Y_RNA.560-201ENST00000384689 102 ntBASIC2.31□□□□□ -2.04
ZNF540Q8NDQ6 RNA5SP508-201ENST00000411327 119 ntBASIC2.31□□□□□ -2.04
ZNF540Q8NDQ6 HMGB1P11-201ENST00000413899 637 ntBASIC2.31□□□□□ -2.04
ZNF540Q8NDQ6 OR51A5P-201ENST00000415429 942 ntBASIC2.31□□□□□ -2.04
ZNF540Q8NDQ6 RPL23AP39-201ENST00000415533 405 ntBASIC2.31□□□□□ -2.04
ZNF540Q8NDQ6 AFDN-AS1-202ENST00000417244 182 ntTSL 2 BASIC2.31□□□□□ -2.04
ZNF540Q8NDQ6 AC016907.1-201ENST00000419483 435 ntBASIC2.31□□□□□ -2.04
ZNF540Q8NDQ6 RPL32P28-201ENST00000443577 397 ntBASIC2.31□□□□□ -2.04
ZNF540Q8NDQ6 AC007879.3-202ENST00000448786 823 ntTSL 1 (best) BASIC2.31□□□□□ -2.04
ZNF540Q8NDQ6 LINC00894-208ENST00000455777 284 ntTSL 2 BASIC2.31□□□□□ -2.04
ZNF540Q8NDQ6 PLSCR5-AS1-201ENST00000473817 450 ntTSL 3 BASIC2.31□□□□□ -2.04
ZNF540Q8NDQ6 AC055731.1-201ENST00000474387 401 ntBASIC2.31□□□□□ -2.04
ZNF540Q8NDQ6 RN7SL429P-201ENST00000479090 223 ntBASIC2.31□□□□□ -2.04
ZNF540Q8NDQ6 RN7SL489P-201ENST00000486185 223 ntBASIC2.31□□□□□ -2.04
ZNF540Q8NDQ6 RN7SL327P-201ENST00000488659 223 ntBASIC2.31□□□□□ -2.04
ZNF540Q8NDQ6 LAMTOR3P2-201ENST00000504479 232 ntBASIC2.31□□□□□ -2.04
ZNF540Q8NDQ6 GYPA-209ENST00000512789 258 ntTSL 1 (best) BASIC2.31□□□□□ -2.04
ZNF540Q8NDQ6 LINC01256-201ENST00000513270 508 ntTSL 2 BASIC2.31□□□□□ -2.04
ZNF540Q8NDQ6 AC092436.2-201ENST00000515188 411 ntTSL 2 BASIC2.31□□□□□ -2.04
ZNF540Q8NDQ6 RNA5SP282-201ENST00000516355 108 ntBASIC2.31□□□□□ -2.04
ZNF540Q8NDQ6 RNU5B-3P-201ENST00000516601 115 ntBASIC2.31□□□□□ -2.04
ZNF540Q8NDQ6 RNU6-572P-201ENST00000516724 80 ntBASIC2.31□□□□□ -2.04
ZNF540Q8NDQ6 RNU6-677P-201ENST00000516914 101 ntBASIC2.31□□□□□ -2.04
ZNF540Q8NDQ6 RNU2-19P-201ENST00000517288 84 ntBASIC2.31□□□□□ -2.04
ZNF540Q8NDQ6 AC103957.1-202ENST00000519814 735 ntTSL 3 BASIC2.31□□□□□ -2.04
ZNF540Q8NDQ6 AC069133.1-201ENST00000522857 566 ntTSL 4 BASIC2.31□□□□□ -2.04
ZNF540Q8NDQ6 LINC02545-201ENST00000525381 306 ntTSL 3 BASIC2.31□□□□□ -2.04
ZNF540Q8NDQ6 AC239802.1-201ENST00000531288 406 ntTSL 5 BASIC2.31□□□□□ -2.04
ZNF540Q8NDQ6 PSMA3P-201ENST00000555485 635 ntBASIC2.31□□□□□ -2.04
ZNF540Q8NDQ6 LINC01570-201ENST00000561572 434 ntTSL 3 BASIC2.31□□□□□ -2.04
ZNF540Q8NDQ6 AC069061.2-202ENST00000580280 357 ntTSL 3 BASIC2.31□□□□□ -2.04
ZNF540Q8NDQ6 AL645944.1-201ENST00000603857 493 ntBASIC2.31□□□□□ -2.04
ZNF540Q8NDQ6 AL355472.4-201ENST00000610233 626 ntBASIC2.31□□□□□ -2.04
ZNF540Q8NDQ6 ZNRD1-AS1_2.5-201ENST00000614729 76 ntBASIC2.31□□□□□ -2.04
ZNF540Q8NDQ6 RN7SL853P-201ENST00000617250 223 ntBASIC2.31□□□□□ -2.04
ZNF540Q8NDQ6 SDR42E1P4-201ENST00000620894 481 ntBASIC2.31□□□□□ -2.04
ZNF540Q8NDQ6 AL512643.1-201ENST00000635735 524 ntBASIC2.31□□□□□ -2.04
ZNF540Q8NDQ6 RNF219-AS1-214ENST00000607862 6001 ntTSL 1 (best) BASIC2.31□□□□□ -2.04
ZNF540Q8NDQ6 AC008555.8-201ENST00000623602 2168 ntBASIC2.3□□□□□ -2.04
ZNF540Q8NDQ6 NEDD4-205ENST00000506154 6751 ntTSL 1 (best) BASIC2.3□□□□□ -2.04
ZNF540Q8NDQ6 COMMD6-201ENST00000355801 486 ntTSL 2 BASIC2.3□□□□□ -2.04
ZNF540Q8NDQ6 SNORD116-9-201ENST00000384000 95 ntBASIC2.3□□□□□ -2.04
ZNF540Q8NDQ6 SNORD116-3-201ENST00000384287 95 ntBASIC2.3□□□□□ -2.04
ZNF540Q8NDQ6 SNORD116-7-201ENST00000384404 95 ntBASIC2.3□□□□□ -2.04
ZNF540Q8NDQ6 SNORD116-5-201ENST00000384462 95 ntBASIC2.3□□□□□ -2.04
ZNF540Q8NDQ6 RNU6-14P-201ENST00000384630 106 ntBASIC2.3□□□□□ -2.04
ZNF540Q8NDQ6 SNORA26.8-201ENST00000391306 124 ntBASIC2.3□□□□□ -2.04
ZNF540Q8NDQ6 CIR1P3-201ENST00000405137 479 ntBASIC2.3□□□□□ -2.04
ZNF540Q8NDQ6 AC127391.1-201ENST00000411737 98 ntBASIC2.3□□□□□ -2.04
ZNF540Q8NDQ6 AC006150.1-201ENST00000412014 263 ntTSL 5 BASIC2.3□□□□□ -2.04
ZNF540Q8NDQ6 AL592148.1-201ENST00000413568 445 ntBASIC2.3□□□□□ -2.04
ZNF540Q8NDQ6 EDDM3CP-201ENST00000415977 425 ntBASIC2.3□□□□□ -2.04
ZNF540Q8NDQ6 AL592435.1-201ENST00000416401 469 ntTSL 3 BASIC2.3□□□□□ -2.04
ZNF540Q8NDQ6 AC012370.1-201ENST00000419244 530 ntTSL 3 BASIC2.3□□□□□ -2.04
ZNF540Q8NDQ6 AL645937.4-201ENST00000419702 389 ntTSL 2 BASIC2.3□□□□□ -2.04
ZNF540Q8NDQ6 AL356277.2-201ENST00000421318 441 ntTSL 2 BASIC2.3□□□□□ -2.04
ZNF540Q8NDQ6 AC006333.1-201ENST00000422401 410 ntTSL 3 BASIC2.3□□□□□ -2.04
ZNF540Q8NDQ6 BX005214.1-201ENST00000427327 476 ntTSL 5 BASIC2.3□□□□□ -2.04
ZNF540Q8NDQ6 AL592466.1-201ENST00000428346 307 ntTSL 5 BASIC2.3□□□□□ -2.04
ZNF540Q8NDQ6 AL139397.1-201ENST00000430456 644 ntTSL 2 BASIC2.3□□□□□ -2.04
ZNF540Q8NDQ6 AC007285.2-201ENST00000433088 518 ntTSL 3 BASIC2.3□□□□□ -2.04
ZNF540Q8NDQ6 AL590399.3-201ENST00000438072 543 ntTSL 5 BASIC2.3□□□□□ -2.04
ZNF540Q8NDQ6 AL512271.1-201ENST00000439878 434 ntTSL 3 BASIC2.3□□□□□ -2.04
ZNF540Q8NDQ6 AC093639.1-201ENST00000441026 473 ntTSL 2 BASIC2.3□□□□□ -2.04
ZNF540Q8NDQ6 AL451164.2-201ENST00000445932 597 ntTSL 2 BASIC2.3□□□□□ -2.04
ZNF540Q8NDQ6 AP000936.2-201ENST00000447151 681 ntBASIC2.3□□□□□ -2.04
ZNF540Q8NDQ6 MTND1P29-201ENST00000448112 647 ntBASIC2.3□□□□□ -2.04
ZNF540Q8NDQ6 AL138900.1-201ENST00000449345 399 ntTSL 3 BASIC2.3□□□□□ -2.04
ZNF540Q8NDQ6 ZNF114P1-201ENST00000453500 292 ntBASIC2.3□□□□□ -2.04
ZNF540Q8NDQ6 TPTE2P5-203ENST00000458118 728 ntBASIC2.3□□□□□ -2.04
ZNF540Q8NDQ6 RNA5SP233-201ENST00000459153 113 ntBASIC2.3□□□□□ -2.04
ZNF540Q8NDQ6 AC107032.1-201ENST00000485945 480 ntBASIC2.3□□□□□ -2.04
ZNF540Q8NDQ6 LNX1-AS1-203ENST00000511989 488 ntTSL 2 BASIC2.3□□□□□ -2.04
ZNF540Q8NDQ6 AC117532.1-201ENST00000514638 323 ntBASIC2.3□□□□□ -2.04
ZNF540Q8NDQ6 MIR514B-201ENST00000516774 80 ntBASIC2.3□□□□□ -2.04
ZNF540Q8NDQ6 RNA5SP137-201ENST00000516833 135 ntBASIC2.3□□□□□ -2.04
ZNF540Q8NDQ6 ZNF706-202ENST00000517844 604 ntAPPRIS P1 TSL 3 BASIC2.3□□□□□ -2.04
ZNF540Q8NDQ6 KLRF2-201ENST00000535540 731 ntAPPRIS P1 TSL 1 (best) BASIC2.3□□□□□ -2.04
ZNF540Q8NDQ6 AC087241.2-201ENST00000535801 324 ntBASIC2.3□□□□□ -2.04
ZNF540Q8NDQ6 AL356432.3-201ENST00000568952 465 ntBASIC2.3□□□□□ -2.04
ZNF540Q8NDQ6 AC022809.1-201ENST00000579247 428 ntTSL 3 BASIC2.3□□□□□ -2.04
ZNF540Q8NDQ6 LINC01893-201ENST00000581750 479 ntTSL 3 BASIC2.3□□□□□ -2.04
ZNF540Q8NDQ6 AC174048.1-201ENST00000603389 144 ntBASIC2.3□□□□□ -2.04
ZNF540Q8NDQ6 AL670379.10-201ENST00000604330 253 ntBASIC2.3□□□□□ -2.04
ZNF540Q8NDQ6 AC007363.1-201ENST00000604736 620 ntBASIC2.3□□□□□ -2.04
ZNF540Q8NDQ6 AL670379.9-201ENST00000605428 253 ntBASIC2.3□□□□□ -2.04
ZNF540Q8NDQ6 AL365204.3-201ENST00000612448 685 ntBASIC2.3□□□□□ -2.04
Retrieved 100 of 98,524 protein–RNA pairs in 100.7 ms