Protein–RNA interactions for Protein: Q6ZMZ3

SYNE3, Nesprin-3, humanhuman

Predictions only

Length 975 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE3Q6ZMZ3 MLF1-203ENST00000392822 2157 ntTSL 5 BASIC3.38□□□□□ -1.87
SYNE3Q6ZMZ3 RAPGEF6-210ENST00000512052 3535 ntTSL 2 BASIC3.37□□□□□ -1.87
SYNE3Q6ZMZ3 TBC1D15-210ENST00000485960 2489 ntAPPRIS P1 TSL 1 (best) BASIC3.37□□□□□ -1.87
SYNE3Q6ZMZ3 SCN1A-219ENST00000641575 12874 ntAPPRIS ALT1 BASIC3.37□□□□□ -1.87
SYNE3Q6ZMZ3 FOXP2-210ENST00000403559 6415 ntTSL 2 BASIC3.37□□□□□ -1.87
SYNE3Q6ZMZ3 Y_RNA.38-201ENST00000362617 102 ntBASIC3.37□□□□□ -1.87
SYNE3Q6ZMZ3 RNU6-1287P-201ENST00000362914 107 ntBASIC3.37□□□□□ -1.87
SYNE3Q6ZMZ3 SNORA4.3-201ENST00000365564 137 ntBASIC3.37□□□□□ -1.87
SYNE3Q6ZMZ3 Y_RNA.453-201ENST00000384223 109 ntBASIC3.37□□□□□ -1.87
SYNE3Q6ZMZ3 RNU6-1060P-201ENST00000384664 107 ntBASIC3.37□□□□□ -1.87
SYNE3Q6ZMZ3 MIR512-1-201ENST00000384913 84 ntBASIC3.37□□□□□ -1.87
SYNE3Q6ZMZ3 MIR887-201ENST00000401258 79 ntBASIC3.37□□□□□ -1.87
SYNE3Q6ZMZ3 AC079150.1-201ENST00000413043 383 ntTSL 3 BASIC3.37□□□□□ -1.87
SYNE3Q6ZMZ3 BTF3L4P3-201ENST00000418879 476 ntBASIC3.37□□□□□ -1.87
SYNE3Q6ZMZ3 ATG3P1-201ENST00000419507 911 ntBASIC3.37□□□□□ -1.87
SYNE3Q6ZMZ3 AP001117.1-201ENST00000428205 609 ntTSL 2 BASIC3.37□□□□□ -1.87
SYNE3Q6ZMZ3 MTND1P2-201ENST00000430604 821 ntBASIC3.37□□□□□ -1.87
SYNE3Q6ZMZ3 MRPS10P2-201ENST00000431226 381 ntBASIC3.37□□□□□ -1.87
SYNE3Q6ZMZ3 RPL21P2-201ENST00000440049 481 ntBASIC3.37□□□□□ -1.87
SYNE3Q6ZMZ3 AC092802.2-202ENST00000444665 371 ntTSL 5 BASIC3.37□□□□□ -1.87
SYNE3Q6ZMZ3 RPL30P14-201ENST00000482744 348 ntBASIC3.37□□□□□ -1.87
SYNE3Q6ZMZ3 AC026780.2-201ENST00000503489 730 ntTSL 5 BASIC3.37□□□□□ -1.87
SYNE3Q6ZMZ3 AC108067.1-201ENST00000514304 215 ntTSL 5 BASIC3.37□□□□□ -1.87
SYNE3Q6ZMZ3 SUB1P1-201ENST00000524415 382 ntBASIC3.37□□□□□ -1.87
SYNE3Q6ZMZ3 AC007619.1-201ENST00000544086 412 ntTSL 5 BASIC3.37□□□□□ -1.87
SYNE3Q6ZMZ3 AL157871.3-201ENST00000557231 293 ntBASIC3.37□□□□□ -1.87
SYNE3Q6ZMZ3 LINC01290-201ENST00000566787 502 ntTSL 2 BASIC3.37□□□□□ -1.87
SYNE3Q6ZMZ3 MIR1273C-201ENST00000578669 77 ntBASIC3.37□□□□□ -1.87
SYNE3Q6ZMZ3 MIR4801-201ENST00000582704 82 ntBASIC3.37□□□□□ -1.87
SYNE3Q6ZMZ3 AC104365.1-201ENST00000588835 394 ntTSL 5 BASIC3.37□□□□□ -1.87
SYNE3Q6ZMZ3 AL138889.2-201ENST00000603883 242 ntBASIC3.37□□□□□ -1.87
SYNE3Q6ZMZ3 RBM11P1-201ENST00000604951 799 ntBASIC3.37□□□□□ -1.87
SYNE3Q6ZMZ3 AC008962.1-201ENST00000605729 304 ntBASIC3.37□□□□□ -1.87
SYNE3Q6ZMZ3 AL020991.1-201ENST00000612314 373 ntBASIC3.37□□□□□ -1.87
SYNE3Q6ZMZ3 DUSP12P1-201ENST00000612874 516 ntBASIC3.37□□□□□ -1.87
SYNE3Q6ZMZ3 C4orf22-209ENST00000621014 228 ntTSL 3 BASIC3.37□□□□□ -1.87
SYNE3Q6ZMZ3 AC091953.5-201ENST00000622919 233 ntBASIC3.37□□□□□ -1.87
SYNE3Q6ZMZ3 AL109837.2-201ENST00000632608 295 ntTSL 3 BASIC3.37□□□□□ -1.87
SYNE3Q6ZMZ3 EFR3A-202ENST00000519656 5247 ntTSL 1 (best) BASIC3.37□□□□□ -1.87
SYNE3Q6ZMZ3 THNSL1-201ENST00000376356 3691 ntAPPRIS P1 TSL 1 (best) BASIC3.36□□□□□ -1.87
SYNE3Q6ZMZ3 RNU6-1127P-201ENST00000384580 107 ntBASIC3.36□□□□□ -1.87
SYNE3Q6ZMZ3 MIR888-201ENST00000401186 77 ntBASIC3.36□□□□□ -1.87
SYNE3Q6ZMZ3 PPP3R1-202ENST00000409377 684 ntTSL 3 BASIC3.36□□□□□ -1.87
SYNE3Q6ZMZ3 AL451074.5-201ENST00000415894 435 ntBASIC3.36□□□□□ -1.87
SYNE3Q6ZMZ3 LINC01675-201ENST00000426519 701 ntTSL 3 BASIC3.36□□□□□ -1.87
SYNE3Q6ZMZ3 AC093151.1-201ENST00000427711 313 ntBASIC3.36□□□□□ -1.87
SYNE3Q6ZMZ3 SRIP2-201ENST00000428470 166 ntBASIC3.36□□□□□ -1.87
SYNE3Q6ZMZ3 AL669831.1-202ENST00000428504 417 ntBASIC3.36□□□□□ -1.87
SYNE3Q6ZMZ3 AC079799.1-201ENST00000430696 331 ntTSL 3 BASIC3.36□□□□□ -1.87
SYNE3Q6ZMZ3 GTF2IP13-201ENST00000438487 386 ntBASIC3.36□□□□□ -1.87
SYNE3Q6ZMZ3 AL590639.1-201ENST00000456484 337 ntBASIC3.36□□□□□ -1.87
SYNE3Q6ZMZ3 AC026801.1-201ENST00000497178 464 ntBASIC3.36□□□□□ -1.87
SYNE3Q6ZMZ3 NAF1-205ENST00000509434 385 ntTSL 3 BASIC3.36□□□□□ -1.87
SYNE3Q6ZMZ3 RNU6-56P-201ENST00000516986 93 ntBASIC3.36□□□□□ -1.87
SYNE3Q6ZMZ3 AC009902.1-201ENST00000519351 183 ntBASIC3.36□□□□□ -1.87
SYNE3Q6ZMZ3 MTND1P35-201ENST00000526739 508 ntBASIC3.36□□□□□ -1.87
SYNE3Q6ZMZ3 MAFTRR-204ENST00000568389 506 ntTSL 4 BASIC3.36□□□□□ -1.87
SYNE3Q6ZMZ3 AC011933.3-201ENST00000578226 372 ntTSL 1 (best) BASIC3.36□□□□□ -1.87
SYNE3Q6ZMZ3 AC007938.3-201ENST00000604965 623 ntBASIC3.36□□□□□ -1.87
SYNE3Q6ZMZ3 AC004805.2-201ENST00000605382 482 ntBASIC3.36□□□□□ -1.87
SYNE3Q6ZMZ3 AC093732.2-201ENST00000607950 274 ntBASIC3.36□□□□□ -1.87
SYNE3Q6ZMZ3 AC090115.4-201ENST00000609970 188 ntBASIC3.36□□□□□ -1.87
SYNE3Q6ZMZ3 RMST_3.1-201ENST00000611651 109 ntBASIC3.36□□□□□ -1.87
SYNE3Q6ZMZ3 DISC2.1-201ENST00000612827 205 ntBASIC3.36□□□□□ -1.87
SYNE3Q6ZMZ3 AC002553.4-201ENST00000616896 331 ntBASIC3.36□□□□□ -1.87
SYNE3Q6ZMZ3 AL512643.1-201ENST00000635735 524 ntBASIC3.36□□□□□ -1.87
SYNE3Q6ZMZ3 USP45-208ENST00000500704 5826 ntAPPRIS P1 TSL 5 BASIC3.35□□□□□ -1.87
SYNE3Q6ZMZ3 KERA-201ENST00000266719 2162 ntAPPRIS P1 TSL 1 (best) BASIC3.35□□□□□ -1.87
SYNE3Q6ZMZ3 PRKG1-205ENST00000401604 5922 ntTSL 5 BASIC3.35□□□□□ -1.87
SYNE3Q6ZMZ3 TCF12-203ENST00000343827 3956 ntTSL 1 (best) BASIC3.35□□□□□ -1.87
SYNE3Q6ZMZ3 FAM35BP-202ENST00000497389 3337 ntBASIC3.35□□□□□ -1.87
SYNE3Q6ZMZ3 IKZF2-213ENST00000457361 9350 ntTSL 5 BASIC3.35□□□□□ -1.87
SYNE3Q6ZMZ3 RPL9P7-201ENST00000330965 580 ntBASIC3.35□□□□□ -1.87
SYNE3Q6ZMZ3 RNU6-371P-201ENST00000364283 108 ntBASIC3.35□□□□□ -1.87
SYNE3Q6ZMZ3 Y_RNA.295-201ENST00000364918 102 ntBASIC3.35□□□□□ -1.87
SYNE3Q6ZMZ3 RNU4-20P-201ENST00000365601 151 ntBASIC3.35□□□□□ -1.87
SYNE3Q6ZMZ3 SNORA75B-201ENST00000384053 137 ntBASIC3.35□□□□□ -1.87
SYNE3Q6ZMZ3 AL592114.1-201ENST00000403842 483 ntBASIC3.35□□□□□ -1.87
SYNE3Q6ZMZ3 RNA5SP118-201ENST00000410385 109 ntBASIC3.35□□□□□ -1.87
SYNE3Q6ZMZ3 RNU6-1068P-201ENST00000410958 103 ntBASIC3.35□□□□□ -1.87
SYNE3Q6ZMZ3 AF274573.2-201ENST00000437772 520 ntTSL 5 BASIC3.35□□□□□ -1.87
SYNE3Q6ZMZ3 MTCO3P18-201ENST00000440206 761 ntBASIC3.35□□□□□ -1.87
SYNE3Q6ZMZ3 CYCSP32-201ENST00000440548 321 ntBASIC3.35□□□□□ -1.87
SYNE3Q6ZMZ3 IGKV1OR-3-201ENST00000446944 348 ntBASIC3.35□□□□□ -1.87
SYNE3Q6ZMZ3 NIPA2P5-201ENST00000452282 464 ntBASIC3.35□□□□□ -1.87
SYNE3Q6ZMZ3 CECR9-201ENST00000453421 199 ntBASIC3.35□□□□□ -1.87
SYNE3Q6ZMZ3 SNRPFP3-201ENST00000457792 225 ntBASIC3.35□□□□□ -1.87
SYNE3Q6ZMZ3 TRBV1-201ENST00000476502 284 ntBASIC3.35□□□□□ -1.87
SYNE3Q6ZMZ3 AC091885.1-201ENST00000506658 268 ntBASIC3.35□□□□□ -1.87
SYNE3Q6ZMZ3 AC009901.1-201ENST00000506703 541 ntBASIC3.35□□□□□ -1.87
SYNE3Q6ZMZ3 SCARNA13-201ENST00000516672 275 ntBASIC3.35□□□□□ -1.87
SYNE3Q6ZMZ3 RNU6-703P-201ENST00000516946 107 ntBASIC3.35□□□□□ -1.87
SYNE3Q6ZMZ3 RNA5SP165-201ENST00000517142 115 ntBASIC3.35□□□□□ -1.87
SYNE3Q6ZMZ3 HPRT1P3-201ENST00000539521 576 ntBASIC3.35□□□□□ -1.87
SYNE3Q6ZMZ3 AC084879.2-201ENST00000551656 369 ntTSL 3 BASIC3.35□□□□□ -1.87
SYNE3Q6ZMZ3 CR383656.11-201ENST00000552261 498 ntTSL 3 BASIC3.35□□□□□ -1.87
SYNE3Q6ZMZ3 AC025030.2-201ENST00000552558 567 ntTSL 2 BASIC3.35□□□□□ -1.87
SYNE3Q6ZMZ3 FOPNL-205ENST00000573429 646 ntTSL 3 BASIC3.35□□□□□ -1.87
SYNE3Q6ZMZ3 AC005909.1-201ENST00000577835 755 ntTSL 3 BASIC3.35□□□□□ -1.87
SYNE3Q6ZMZ3 MIR133A1HG-202ENST00000581072 4226 ntTSL 1 (best) BASIC3.35□□□□□ -1.87
Retrieved 100 of 98,524 protein–RNA pairs in 122.4 ms