Protein–RNA interactions for Protein: Q02388

COL7A1, Collagen alpha-1(VII) chain, humanhuman

Predictions only

Length 2,944 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1Q02388 SNORD65-201ENST00000391079 73 ntBASIC0.27□□□□□ -2.37
COL7A1Q02388 AL162394.1-201ENST00000413271 419 ntTSL 2 BASIC0.27□□□□□ -2.37
COL7A1Q02388 AC241584.1-201ENST00000438469 1241 ntBASIC0.27□□□□□ -2.37
COL7A1Q02388 AC068135.1-201ENST00000446164 246 ntBASIC0.27□□□□□ -2.37
COL7A1Q02388 AC087477.1-201ENST00000465747 340 ntBASIC0.27□□□□□ -2.37
COL7A1Q02388 RNU6-1308P-201ENST00000516817 103 ntBASIC0.27□□□□□ -2.37
COL7A1Q02388 RN7SKP277-201ENST00000516895 283 ntBASIC0.27□□□□□ -2.37
COL7A1Q02388 MTND2P26-201ENST00000528255 1029 ntBASIC0.27□□□□□ -2.37
COL7A1Q02388 CR383656.7-201ENST00000548164 174 ntBASIC0.27□□□□□ -2.37
COL7A1Q02388 MIR4299-201ENST00000577899 72 ntBASIC0.27□□□□□ -2.37
COL7A1Q02388 OR1M4P-201ENST00000589199 287 ntBASIC0.27□□□□□ -2.37
COL7A1Q02388 AC002545.1-201ENST00000592511 181 ntBASIC0.27□□□□□ -2.37
COL7A1Q02388 AC079395.3-201ENST00000615161 484 ntBASIC0.27□□□□□ -2.37
COL7A1Q02388 FAM157B-203ENST00000639350 358 ntBASIC0.27□□□□□ -2.37
COL7A1Q02388 RNU6-1074P-201ENST00000383995 104 ntBASIC0.27□□□□□ -2.37
COL7A1Q02388 MTCO3P4-201ENST00000419236 787 ntBASIC0.27□□□□□ -2.37
COL7A1Q02388 TRAPPC2P8-201ENST00000440676 396 ntBASIC0.27□□□□□ -2.37
COL7A1Q02388 TRAPPC2P3-201ENST00000443200 321 ntBASIC0.27□□□□□ -2.37
COL7A1Q02388 AC004994.1-201ENST00000447057 313 ntTSL 3 BASIC0.27□□□□□ -2.37
COL7A1Q02388 SNRPGP6-201ENST00000451124 220 ntBASIC0.27□□□□□ -2.37
COL7A1Q02388 CPHL1P-203ENST00000471823 523 ntTSL 5 BASIC0.27□□□□□ -2.37
COL7A1Q02388 AC134050.1-201ENST00000495088 933 ntBASIC0.27□□□□□ -2.37
COL7A1Q02388 AC114284.1-201ENST00000511422 1114 ntTSL 2 BASIC0.27□□□□□ -2.37
COL7A1Q02388 RNU6-322P-201ENST00000516010 103 ntBASIC0.27□□□□□ -2.37
COL7A1Q02388 RNU6-362P-201ENST00000516736 90 ntBASIC0.27□□□□□ -2.37
COL7A1Q02388 AC068880.2-201ENST00000521016 362 ntTSL 5 BASIC0.27□□□□□ -2.37
COL7A1Q02388 AP006587.4-201ENST00000526053 529 ntBASIC0.27□□□□□ -2.37
COL7A1Q02388 AC090857.2-201ENST00000526362 723 ntTSL 2 BASIC0.27□□□□□ -2.37
COL7A1Q02388 AL590705.4-201ENST00000532209 134 ntBASIC0.27□□□□□ -2.37
COL7A1Q02388 BNIP3P16-201ENST00000589779 534 ntBASIC0.27□□□□□ -2.37
COL7A1Q02388 AP005212.4-201ENST00000614206 710 ntBASIC0.27□□□□□ -2.37
COL7A1Q02388 AC095031.1-201ENST00000623685 672 ntBASIC0.27□□□□□ -2.37
COL7A1Q02388 AC007490.1-201ENST00000624321 703 ntBASIC0.27□□□□□ -2.37
COL7A1Q02388 OR6C75-201ENST00000343399 939 ntAPPRIS P1 BASIC0.27□□□□□ -2.37
COL7A1Q02388 Y_RNA.28-201ENST00000362554 111 ntBASIC0.27□□□□□ -2.37
COL7A1Q02388 TRDJ3-201ENST00000390476 59 ntAPPRIS P1 BASIC0.27□□□□□ -2.37
COL7A1Q02388 SNORA40.19-201ENST00000390846 128 ntBASIC0.27□□□□□ -2.37
COL7A1Q02388 AC078974.1-201ENST00000411597 223 ntBASIC0.27□□□□□ -2.37
COL7A1Q02388 UBE2Q2P5Y-201ENST00000413867 207 ntBASIC0.27□□□□□ -2.37
COL7A1Q02388 UBE2Q2P4Y-201ENST00000433767 207 ntBASIC0.27□□□□□ -2.37
COL7A1Q02388 RPL7P29-201ENST00000437151 728 ntBASIC0.27□□□□□ -2.37
COL7A1Q02388 FAR2P1-203ENST00000440931 187 ntTSL 2 BASIC0.27□□□□□ -2.37
COL7A1Q02388 HRAT17-201ENST00000447785 547 ntTSL 4 BASIC0.27□□□□□ -2.37
COL7A1Q02388 AC022445.1-201ENST00000457499 408 ntTSL 3 BASIC0.27□□□□□ -2.37
COL7A1Q02388 AC087071.2-201ENST00000483283 575 ntTSL 4 BASIC0.27□□□□□ -2.37
COL7A1Q02388 LINC02501-201ENST00000510420 426 ntTSL 2 BASIC0.27□□□□□ -2.37
COL7A1Q02388 RNA5SP134-201ENST00000516492 96 ntBASIC0.27□□□□□ -2.37
COL7A1Q02388 AC013509.1-201ENST00000524269 339 ntTSL 3 BASIC0.27□□□□□ -2.37
COL7A1Q02388 MED28P6-201ENST00000558776 231 ntBASIC0.27□□□□□ -2.37
COL7A1Q02388 AC023158.1-201ENST00000561632 1025 ntBASIC0.27□□□□□ -2.37
COL7A1Q02388 VN1R82P-201ENST00000601481 356 ntBASIC0.27□□□□□ -2.37
COL7A1Q02388 AC242628.1-201ENST00000606810 391 ntBASIC0.27□□□□□ -2.37
COL7A1Q02388 AL445584.2-201ENST00000614030 616 ntTSL 5 BASIC0.27□□□□□ -2.37
COL7A1Q02388 CENPF-206ENST00000614578 528 ntTSL 5 BASIC0.27□□□□□ -2.37
COL7A1Q02388 AL355810.1-201ENST00000614629 552 ntBASIC0.27□□□□□ -2.37
COL7A1Q02388 CR848007.1-201ENST00000442354 1699 ntBASIC0.27□□□□□ -2.37
COL7A1Q02388 SAMSN1-202ENST00000400564 1382 ntTSL 1 (best) BASIC0.26□□□□□ -2.37
COL7A1Q02388 MTND4P8-201ENST00000514997 1362 ntBASIC0.26□□□□□ -2.37
COL7A1Q02388 RNU6-730P-201ENST00000383954 104 ntBASIC0.26□□□□□ -2.37
COL7A1Q02388 PRRC2CP1-201ENST00000404428 159 ntBASIC0.26□□□□□ -2.37
COL7A1Q02388 RNU2-21P-201ENST00000410368 188 ntBASIC0.26□□□□□ -2.37
COL7A1Q02388 PIGPP2-201ENST00000411569 458 ntBASIC0.26□□□□□ -2.37
COL7A1Q02388 OR9R1P-201ENST00000412200 877 ntBASIC0.26□□□□□ -2.37
COL7A1Q02388 RPL37P10-201ENST00000412884 288 ntBASIC0.26□□□□□ -2.37
COL7A1Q02388 EDDM3CP-201ENST00000415977 425 ntBASIC0.26□□□□□ -2.37
COL7A1Q02388 NDUFB4P7-201ENST00000423198 363 ntBASIC0.26□□□□□ -2.37
COL7A1Q02388 UBE2D3P2-201ENST00000424409 445 ntBASIC0.26□□□□□ -2.37
COL7A1Q02388 AC064852.1-201ENST00000427571 851 ntTSL 3 BASIC0.26□□□□□ -2.37
COL7A1Q02388 AC116035.1-201ENST00000431057 517 ntTSL 3 BASIC0.26□□□□□ -2.37
COL7A1Q02388 NDUFA5P10-201ENST00000432147 357 ntBASIC0.26□□□□□ -2.37
COL7A1Q02388 YWHAZP8-201ENST00000436935 731 ntBASIC0.26□□□□□ -2.37
COL7A1Q02388 MACC1-AS1-201ENST00000439285 639 ntTSL 3 BASIC0.26□□□□□ -2.37
COL7A1Q02388 AC004865.1-201ENST00000442276 1003 ntBASIC0.26□□□□□ -2.37
COL7A1Q02388 HTR2A-AS1-202ENST00000452352 384 ntTSL 2 BASIC0.26□□□□□ -2.37
COL7A1Q02388 NUCB2-202ENST00000458064 1279 ntTSL 1 (best) BASIC0.26□□□□□ -2.37
COL7A1Q02388 SNORD124-201ENST00000459577 104 ntBASIC0.26□□□□□ -2.37
COL7A1Q02388 AC046136.1-201ENST00000459855 533 ntTSL 3 BASIC0.26□□□□□ -2.37
COL7A1Q02388 AC104689.1-201ENST00000473356 768 ntBASIC0.26□□□□□ -2.37
COL7A1Q02388 LINC02382-201ENST00000515840 614 ntTSL 1 (best) BASIC0.26□□□□□ -2.37
COL7A1Q02388 AC012435.1-202ENST00000568772 240 ntBASIC0.26□□□□□ -2.37
COL7A1Q02388 MIR4713-201ENST00000582691 75 ntBASIC0.26□□□□□ -2.37
COL7A1Q02388 LINC01515-204ENST00000595269 402 ntTSL 5 BASIC0.26□□□□□ -2.37
COL7A1Q02388 AC008945.2-201ENST00000606056 604 ntBASIC0.26□□□□□ -2.37
COL7A1Q02388 AC099842.1-201ENST00000619919 596 ntBASIC0.26□□□□□ -2.37
COL7A1Q02388 TEX15-201ENST00000256246 10110 ntTSL 1 (best) BASIC0.26□□□□□ -2.37
COL7A1Q02388 Y_RNA.52-201ENST00000362760 96 ntBASIC0.26□□□□□ -2.37
COL7A1Q02388 Y_RNA.228-201ENST00000364346 98 ntBASIC0.26□□□□□ -2.37
COL7A1Q02388 SEC61A2-203ENST00000379017 600 ntTSL 5 BASIC0.26□□□□□ -2.37
COL7A1Q02388 MTCO1P56-201ENST00000401674 224 ntBASIC0.26□□□□□ -2.37
COL7A1Q02388 AL160162.1-202ENST00000417654 244 ntTSL 3 BASIC0.26□□□□□ -2.37
COL7A1Q02388 AL606490.4-201ENST00000423117 127 ntBASIC0.26□□□□□ -2.37
COL7A1Q02388 UBE2V2P3-201ENST00000433562 437 ntBASIC0.26□□□□□ -2.37
COL7A1Q02388 HSPE1P21-201ENST00000438283 308 ntBASIC0.26□□□□□ -2.37
COL7A1Q02388 AL354941.1-201ENST00000438600 464 ntBASIC0.26□□□□□ -2.37
COL7A1Q02388 AC092393.1-201ENST00000439625 742 ntBASIC0.26□□□□□ -2.37
COL7A1Q02388 AL589880.1-201ENST00000448271 287 ntBASIC0.26□□□□□ -2.37
COL7A1Q02388 RPS15AP27-201ENST00000449183 343 ntBASIC0.26□□□□□ -2.37
COL7A1Q02388 AL591504.1-201ENST00000450681 414 ntTSL 3 BASIC0.26□□□□□ -2.37
COL7A1Q02388 AC114982.2-201ENST00000461396 358 ntBASIC0.26□□□□□ -2.37
COL7A1Q02388 AC092757.1-201ENST00000467293 467 ntBASIC0.26□□□□□ -2.37
Retrieved 100 of 98,524 protein–RNA pairs in 103.9 ms