Protein–RNA interactions for Protein: Q00056

HOXA4, Homeobox protein Hox-A4, humanhuman

Predicted RBP Predictions only

Length 320 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA4Q00056 CASP1P1-201ENST00000526345 212 ntBASIC3.2□□□□□ -1.9
HOXA4Q00056 OR5D17P-201ENST00000531492 978 ntBASIC3.2□□□□□ -1.9
HOXA4Q00056 AL352979.2-201ENST00000556988 366 ntTSL 3 BASIC3.2□□□□□ -1.9
HOXA4Q00056 AC093227.3-202ENST00000586606 704 ntAPPRIS P5 TSL 3 BASIC3.2□□□□□ -1.9
HOXA4Q00056 ZNF616-202ENST00000596290 568 ntTSL 4 BASIC3.2□□□□□ -1.9
HOXA4Q00056 EAF1-AS1-207ENST00000599742 772 ntTSL 5 BASIC3.2□□□□□ -1.9
HOXA4Q00056 AC092447.9-201ENST00000603395 144 ntBASIC3.2□□□□□ -1.9
HOXA4Q00056 BRDTP1-201ENST00000605735 677 ntBASIC3.2□□□□□ -1.9
HOXA4Q00056 AL162373.1-201ENST00000620433 407 ntBASIC3.2□□□□□ -1.9
HOXA4Q00056 AC018692.1-202ENST00000623559 676 ntTSL 5 BASIC3.2□□□□□ -1.9
HOXA4Q00056 CDC27P3-201ENST00000635418 1910 ntBASIC3.2□□□□□ -1.9
HOXA4Q00056 ACTR6-212ENST00000552376 1659 ntTSL 5 BASIC3.2□□□□□ -1.9
HOXA4Q00056 AGTR1-206ENST00000474935 1795 ntAPPRIS P1 TSL 3 BASIC3.2□□□□□ -1.9
HOXA4Q00056 ORMDL1-201ENST00000325795 2692 ntAPPRIS P1 TSL 1 (best) BASIC3.19□□□□□ -1.9
HOXA4Q00056 AC079160.1-202ENST00000508406 2795 ntTSL 5 BASIC3.19□□□□□ -1.9
HOXA4Q00056 STAU2-207ENST00000519961 3928 ntTSL 1 (best) BASIC3.19□□□□□ -1.9
HOXA4Q00056 HERC4-204ENST00000395198 4445 ntAPPRIS ALT1 TSL 1 (best) BASIC3.19□□□□□ -1.9
HOXA4Q00056 ETV1-203ENST00000403527 3363 ntTSL 1 (best) BASIC3.19□□□□□ -1.9
HOXA4Q00056 OR5K1-202ENST00000642057 3466 ntAPPRIS P1 BASIC3.19□□□□□ -1.9
HOXA4Q00056 CNTN6-201ENST00000350110 3814 ntAPPRIS P1 TSL 1 (best) BASIC3.19□□□□□ -1.9
HOXA4Q00056 RNU6-1317P-201ENST00000364582 104 ntBASIC3.19□□□□□ -1.9
HOXA4Q00056 RNU6-596P-201ENST00000365395 98 ntBASIC3.19□□□□□ -1.9
HOXA4Q00056 Y_RNA.428-201ENST00000384078 102 ntBASIC3.19□□□□□ -1.9
HOXA4Q00056 RNU6-463P-201ENST00000384340 107 ntBASIC3.19□□□□□ -1.9
HOXA4Q00056 MIR199A2-201ENST00000385289 110 ntBASIC3.19□□□□□ -1.9
HOXA4Q00056 MORN2-203ENST00000409131 544 ntTSL 5 BASIC3.19□□□□□ -1.9
HOXA4Q00056 RN7SKP156-201ENST00000410308 342 ntBASIC3.19□□□□□ -1.9
HOXA4Q00056 HNRNPDLP1-201ENST00000412834 550 ntBASIC3.19□□□□□ -1.9
HOXA4Q00056 UTS2B-203ENST00000427544 676 ntAPPRIS P1 TSL 1 (best) BASIC3.19□□□□□ -1.9
HOXA4Q00056 AC007271.1-201ENST00000428188 382 ntTSL 3 BASIC3.19□□□□□ -1.9
HOXA4Q00056 AC011816.1-201ENST00000441346 546 ntBASIC3.19□□□□□ -1.9
HOXA4Q00056 ANP32BP2-201ENST00000454525 545 ntBASIC3.19□□□□□ -1.9
HOXA4Q00056 HMGN2P13-201ENST00000476476 274 ntBASIC3.19□□□□□ -1.9
HOXA4Q00056 TAF8-207ENST00000482432 556 ntTSL 2 BASIC3.19□□□□□ -1.9
HOXA4Q00056 AC069499.1-201ENST00000489433 509 ntBASIC3.19□□□□□ -1.9
HOXA4Q00056 AC022447.4-201ENST00000504053 364 ntBASIC3.19□□□□□ -1.9
HOXA4Q00056 PARP8-211ENST00000505554 3825 ntTSL 5 BASIC3.19□□□□□ -1.9
HOXA4Q00056 AC091976.1-202ENST00000509211 630 ntTSL 3 BASIC3.19□□□□□ -1.9
HOXA4Q00056 LINC01969-201ENST00000514468 455 ntTSL 3 BASIC3.19□□□□□ -1.9
HOXA4Q00056 RNU6-307P-201ENST00000516743 106 ntBASIC3.19□□□□□ -1.9
HOXA4Q00056 AC023632.4-201ENST00000517783 191 ntBASIC3.19□□□□□ -1.9
HOXA4Q00056 AP006287.2-201ENST00000529036 502 ntTSL 2 BASIC3.19□□□□□ -1.9
HOXA4Q00056 AC092747.1-201ENST00000538920 351 ntTSL 5 BASIC3.19□□□□□ -1.9
HOXA4Q00056 AC103996.1-201ENST00000555468 102 ntBASIC3.19□□□□□ -1.9
HOXA4Q00056 MIR4273-201ENST00000582824 84 ntBASIC3.19□□□□□ -1.9
HOXA4Q00056 AL020997.2-201ENST00000602607 184 ntBASIC3.19□□□□□ -1.9
HOXA4Q00056 AC104695.3-201ENST00000604052 296 ntBASIC3.19□□□□□ -1.9
HOXA4Q00056 SNORA62.6-201ENST00000606322 83 ntBASIC3.19□□□□□ -1.9
HOXA4Q00056 AL121772.2-201ENST00000614331 297 ntBASIC3.19□□□□□ -1.9
HOXA4Q00056 SMAD5-AS1_1.1-201ENST00000619886 266 ntBASIC3.19□□□□□ -1.9
HOXA4Q00056 AC099506.2-201ENST00000623074 221 ntBASIC3.19□□□□□ -1.9
HOXA4Q00056 RMDN2-AS1-204ENST00000626669 448 ntTSL 5 BASIC3.19□□□□□ -1.9
HOXA4Q00056 TTK-211ENST00000627129 240 ntTSL 5 BASIC3.19□□□□□ -1.9
HOXA4Q00056 AL109837.2-201ENST00000632608 295 ntTSL 3 BASIC3.19□□□□□ -1.9
HOXA4Q00056 ADAM28-201ENST00000265769 7052 ntAPPRIS P1 TSL 1 (best) BASIC3.19□□□□□ -1.9
HOXA4Q00056 AC018555.1-201ENST00000567548 1980 ntBASIC3.19□□□□□ -1.9
HOXA4Q00056 GABRG2-213ENST00000639046 3058 ntTSL 5 BASIC3.19□□□□□ -1.9
HOXA4Q00056 RTN4-209ENST00000405240 4061 ntTSL 1 (best) BASIC3.19□□□□□ -1.9
HOXA4Q00056 SYTL2-213ENST00000525702 2727 ntTSL 1 (best) BASIC3.19□□□□□ -1.9
HOXA4Q00056 AL359693.1-201ENST00000614959 2407 ntBASIC3.19□□□□□ -1.9
HOXA4Q00056 USP9Y-201ENST00000338981 10036 ntAPPRIS P1 TSL 1 (best) BASIC3.19□□□□□ -1.9
HOXA4Q00056 SCN3A-209ENST00000639244 8854 ntTSL 5 BASIC3.18□□□□□ -1.9
HOXA4Q00056 SLAIN1-203ENST00000351546 2394 ntTSL 2 BASIC3.18□□□□□ -1.9
HOXA4Q00056 STON1-GTF2A1L-203ENST00000402114 3790 ntTSL 2 BASIC3.18□□□□□ -1.9
HOXA4Q00056 PANK1-202ENST00000322191 2513 ntTSL 1 (best) BASIC3.18□□□□□ -1.9
HOXA4Q00056 GPRC6A-203ENST00000530250 2310 ntTSL 1 (best) BASIC3.18□□□□□ -1.9
HOXA4Q00056 PLS3-203ENST00000420625 3150 ntTSL 5 BASIC3.18□□□□□ -1.9
HOXA4Q00056 FNDC3A-202ENST00000398316 5714 ntTSL 1 (best) BASIC3.18□□□□□ -1.9
HOXA4Q00056 RNU6-140P-201ENST00000384566 108 ntBASIC3.18□□□□□ -1.9
HOXA4Q00056 TRAJ16-201ENST00000390521 60 ntAPPRIS P1 BASIC3.18□□□□□ -1.9
HOXA4Q00056 Y_RNA.645-201ENST00000391229 102 ntBASIC3.18□□□□□ -1.9
HOXA4Q00056 AL513475.1-201ENST00000406602 315 ntBASIC3.18□□□□□ -1.9
HOXA4Q00056 AC010731.2-201ENST00000415275 440 ntTSL 3 BASIC3.18□□□□□ -1.9
HOXA4Q00056 AL513365.2-201ENST00000423060 529 ntTSL 2 BASIC3.18□□□□□ -1.9
HOXA4Q00056 AL024508.1-201ENST00000432477 505 ntTSL 2 BASIC3.18□□□□□ -1.9
HOXA4Q00056 AL353997.1-201ENST00000432936 108 ntBASIC3.18□□□□□ -1.9
HOXA4Q00056 AL158209.1-201ENST00000433460 439 ntTSL 3 BASIC3.18□□□□□ -1.9
HOXA4Q00056 NDUFB1P1-201ENST00000435191 180 ntBASIC3.18□□□□□ -1.9
HOXA4Q00056 AC092573.2-202ENST00000437243 336 ntTSL 3 BASIC3.18□□□□□ -1.9
HOXA4Q00056 AL356535.1-201ENST00000440335 398 ntBASIC3.18□□□□□ -1.9
HOXA4Q00056 DAP3P1-201ENST00000441522 278 ntBASIC3.18□□□□□ -1.9
HOXA4Q00056 RPL21P11-201ENST00000461458 483 ntBASIC3.18□□□□□ -1.9
HOXA4Q00056 RPL9P32-201ENST00000464118 620 ntBASIC3.18□□□□□ -1.9
HOXA4Q00056 FTH1P2-201ENST00000466086 412 ntBASIC3.18□□□□□ -1.9
HOXA4Q00056 RN7SL132P-201ENST00000478131 296 ntBASIC3.18□□□□□ -1.9
HOXA4Q00056 RNU6-764P-201ENST00000516396 105 ntBASIC3.18□□□□□ -1.9
HOXA4Q00056 CBX3P8-201ENST00000532412 525 ntBASIC3.18□□□□□ -1.9
HOXA4Q00056 AC099793.1-201ENST00000567538 285 ntTSL 3 BASIC3.18□□□□□ -1.9
HOXA4Q00056 AC034105.4-201ENST00000568304 277 ntBASIC3.18□□□□□ -1.9
HOXA4Q00056 AC087749.1-202ENST00000585020 566 ntTSL 2 BASIC3.18□□□□□ -1.9
HOXA4Q00056 AL645944.1-201ENST00000603857 493 ntBASIC3.18□□□□□ -1.9
HOXA4Q00056 AC092636.1-201ENST00000608609 415 ntTSL 2 BASIC3.18□□□□□ -1.9
HOXA4Q00056 CCT7-217ENST00000626868 249 ntTSL 5 BASIC3.18□□□□□ -1.9
HOXA4Q00056 SYNE2-202ENST00000344113 21777 ntAPPRIS ALT2 TSL 1 (best) BASIC3.18□□□□□ -1.9
HOXA4Q00056 IPO8P1-201ENST00000455509 3109 ntBASIC3.18□□□□□ -1.9
HOXA4Q00056 PCLO-206ENST00000437081 3786 ntTSL 1 (best) BASIC3.18□□□□□ -1.9
HOXA4Q00056 LINC01828-203ENST00000452716 3250 ntTSL 5 BASIC3.18□□□□□ -1.9
HOXA4Q00056 RXFP1-205ENST00000448688 3861 ntTSL 1 (best) BASIC3.18□□□□□ -1.9
HOXA4Q00056 AC091812.1-201ENST00000432235 1948 ntBASIC3.17□□□□□ -1.9
HOXA4Q00056 ZNF92-204ENST00000450302 2957 ntTSL 1 (best) BASIC3.17□□□□□ -1.9
Retrieved 100 of 98,524 protein–RNA pairs in 11.5 ms