Protein–RNA interactions for Protein: P49639

HOXA1, Homeobox protein Hox-A1, humanhuman

Predicted RBP Predictions only

Length 335 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA1P49639 AC093027.1-201ENST00000546698 429 ntBASIC2.77□□□□□ -1.97
HOXA1P49639 IGKV1-33-202ENST00000558152 324 ntAPPRIS ALT2 TSL 5 BASIC2.77□□□□□ -1.97
HOXA1P49639 MIR1273C-201ENST00000578669 77 ntBASIC2.77□□□□□ -1.97
HOXA1P49639 AC243960.4-201ENST00000600532 288 ntBASIC2.77□□□□□ -1.97
HOXA1P49639 VN1R85P-201ENST00000601587 426 ntBASIC2.77□□□□□ -1.97
HOXA1P49639 C8orf59P2-201ENST00000603441 271 ntBASIC2.77□□□□□ -1.97
HOXA1P49639 MIR4458HG-202ENST00000605918 1057 ntTSL 1 (best) BASIC2.77□□□□□ -1.97
HOXA1P49639 IGKV1D-33-202ENST00000611734 324 ntAPPRIS ALT2 TSL 5 BASIC2.77□□□□□ -1.97
HOXA1P49639 FAM157A-202ENST00000615155 405 ntBASIC2.77□□□□□ -1.97
HOXA1P49639 RMST_7.1-201ENST00000621935 268 ntBASIC2.77□□□□□ -1.97
HOXA1P49639 AC068724.3-201ENST00000625906 87 ntBASIC2.77□□□□□ -1.97
HOXA1P49639 hsa-mir-4776-1.1-201ENST00000636364 80 ntBASIC2.77□□□□□ -1.97
HOXA1P49639 GYPB-216ENST00000638448 363 ntAPPRIS P1 TSL 1 (best) BASIC2.77□□□□□ -1.97
HOXA1P49639 RGPD3-202ENST00000409886 5594 ntAPPRIS P2 TSL 1 (best) BASIC2.77□□□□□ -1.97
HOXA1P49639 LCA5L-218ENST00000485895 2551 ntTSL 1 (best) BASIC2.77□□□□□ -1.97
HOXA1P49639 AC017071.1-201ENST00000564407 2204 ntBASIC2.77□□□□□ -1.97
HOXA1P49639 AC032011.1-201ENST00000611703 1549 ntBASIC2.77□□□□□ -1.97
HOXA1P49639 FRS2-201ENST00000397997 6550 ntAPPRIS P1 TSL 5 BASIC2.77□□□□□ -1.97
HOXA1P49639 MTND4P29-201ENST00000503122 1372 ntBASIC2.76□□□□□ -1.97
HOXA1P49639 FOXP2-211ENST00000408937 6443 ntTSL 1 (best) BASIC2.76□□□□□ -1.97
HOXA1P49639 LRRC70-201ENST00000334994 2249 ntAPPRIS P1 TSL 1 (best) BASIC2.76□□□□□ -1.97
HOXA1P49639 MT-ND4L-201ENST00000361335 297 ntAPPRIS P1 BASIC2.76□□□□□ -1.97
HOXA1P49639 VTRNA1-1-201ENST00000363120 99 ntBASIC2.76□□□□□ -1.97
HOXA1P49639 RNU6-266P-201ENST00000364225 107 ntBASIC2.76□□□□□ -1.97
HOXA1P49639 Y_RNA.263-201ENST00000364659 114 ntBASIC2.76□□□□□ -1.97
HOXA1P49639 Y_RNA.399-201ENST00000383955 105 ntBASIC2.76□□□□□ -1.97
HOXA1P49639 MIR301A-201ENST00000385261 86 ntBASIC2.76□□□□□ -1.97
HOXA1P49639 RNU2-41P-201ENST00000410991 178 ntBASIC2.76□□□□□ -1.97
HOXA1P49639 AL592148.1-201ENST00000413568 445 ntBASIC2.76□□□□□ -1.97
HOXA1P49639 Z99755.1-201ENST00000414048 380 ntBASIC2.76□□□□□ -1.97
HOXA1P49639 CYCSP33-201ENST00000414485 327 ntBASIC2.76□□□□□ -1.97
HOXA1P49639 RPLP0P7-201ENST00000416050 667 ntBASIC2.76□□□□□ -1.97
HOXA1P49639 USP9YP20-201ENST00000419224 558 ntBASIC2.76□□□□□ -1.97
HOXA1P49639 AL355989.1-202ENST00000419406 408 ntTSL 3 BASIC2.76□□□□□ -1.97
HOXA1P49639 AL136322.1-201ENST00000422250 548 ntTSL 4 BASIC2.76□□□□□ -1.97
HOXA1P49639 AC004870.4-201ENST00000424359 360 ntTSL 2 BASIC2.76□□□□□ -1.97
HOXA1P49639 AC092047.1-201ENST00000424997 240 ntBASIC2.76□□□□□ -1.97
HOXA1P49639 MYL8P-204ENST00000431574 518 ntBASIC2.76□□□□□ -1.97
HOXA1P49639 ATP2B2-IT1-201ENST00000440152 472 ntTSL 3 BASIC2.76□□□□□ -1.97
HOXA1P49639 UQCRHP3-201ENST00000451503 251 ntBASIC2.76□□□□□ -1.97
HOXA1P49639 NUTF2P7-201ENST00000453086 375 ntBASIC2.76□□□□□ -1.97
HOXA1P49639 AC019155.3-201ENST00000454957 600 ntTSL 2 BASIC2.76□□□□□ -1.97
HOXA1P49639 LINC01755-201ENST00000455010 453 ntTSL 2 BASIC2.76□□□□□ -1.97
HOXA1P49639 AL583843.1-201ENST00000456070 346 ntBASIC2.76□□□□□ -1.97
HOXA1P49639 MTND1P11-201ENST00000456661 876 ntBASIC2.76□□□□□ -1.97
HOXA1P49639 TH2LCRR-203ENST00000457489 439 ntTSL 3 BASIC2.76□□□□□ -1.97
HOXA1P49639 AC103987.1-201ENST00000473394 348 ntBASIC2.76□□□□□ -1.97
HOXA1P49639 RPS29P20-201ENST00000489592 171 ntBASIC2.76□□□□□ -1.97
HOXA1P49639 PLCXD2-AS1-201ENST00000493131 491 ntTSL 3 BASIC2.76□□□□□ -1.97
HOXA1P49639 AC096733.1-201ENST00000503844 402 ntTSL 3 BASIC2.76□□□□□ -1.97
HOXA1P49639 AC104136.1-201ENST00000512969 394 ntBASIC2.76□□□□□ -1.97
HOXA1P49639 RNA5SP217-201ENST00000515959 91 ntBASIC2.76□□□□□ -1.97
HOXA1P49639 SNORA14.1-201ENST00000516113 141 ntBASIC2.76□□□□□ -1.97
HOXA1P49639 RNU1-143P-201ENST00000516296 146 ntBASIC2.76□□□□□ -1.97
HOXA1P49639 FAM92A-209ENST00000519679 538 ntTSL 4 BASIC2.76□□□□□ -1.97
HOXA1P49639 AC105029.1-201ENST00000520250 669 ntBASIC2.76□□□□□ -1.97
HOXA1P49639 IL7-206ENST00000520269 456 ntTSL 3 BASIC2.76□□□□□ -1.97
HOXA1P49639 AP002004.1-207ENST00000531371 526 ntTSL 1 (best) BASIC2.76□□□□□ -1.97
HOXA1P49639 AC011611.2-201ENST00000549888 358 ntTSL 3 BASIC2.76□□□□□ -1.97
HOXA1P49639 H3F3AP1-201ENST00000559984 334 ntBASIC2.76□□□□□ -1.97
HOXA1P49639 RN7SL703P-201ENST00000578485 302 ntBASIC2.76□□□□□ -1.97
HOXA1P49639 MIR5692C1-201ENST00000585309 91 ntBASIC2.76□□□□□ -1.97
HOXA1P49639 AC080078.1-201ENST00000603643 410 ntTSL 3 BASIC2.76□□□□□ -1.97
HOXA1P49639 AC007938.3-201ENST00000604965 623 ntBASIC2.76□□□□□ -1.97
HOXA1P49639 U1.23-201ENST00000610293 146 ntBASIC2.76□□□□□ -1.97
HOXA1P49639 MIR7851-201ENST00000610611 160 ntBASIC2.76□□□□□ -1.97
HOXA1P49639 AC025253.1-201ENST00000613623 543 ntBASIC2.76□□□□□ -1.97
HOXA1P49639 RNU1-68P-201ENST00000615382 146 ntBASIC2.76□□□□□ -1.97
HOXA1P49639 U1.39-201ENST00000621562 146 ntBASIC2.76□□□□□ -1.97
HOXA1P49639 AL031601.2-202ENST00000622650 282 ntBASIC2.76□□□□□ -1.97
HOXA1P49639 CYP3A43-217ENST00000631161 328 ntTSL 5 BASIC2.76□□□□□ -1.97
HOXA1P49639 TPTEP1-208ENST00000636884 213 ntBASIC2.76□□□□□ -1.97
HOXA1P49639 AC119674.1-207ENST00000641355 633 ntBASIC2.76□□□□□ -1.97
HOXA1P49639 PTER-201ENST00000298942 3448 ntTSL 5 BASIC2.76□□□□□ -1.97
HOXA1P49639 ZMYM2-203ENST00000382874 10139 ntAPPRIS P1 TSL 1 (best) BASIC2.76□□□□□ -1.97
HOXA1P49639 AF165147.1-201ENST00000433310 6103 ntTSL 2 BASIC2.76□□□□□ -1.97
HOXA1P49639 AC108206.1-201ENST00000570186 4159 ntBASIC2.75□□□□□ -1.97
HOXA1P49639 SNORD9-201ENST00000362566 104 ntBASIC2.75□□□□□ -1.97
HOXA1P49639 RNU4-73P-201ENST00000363164 141 ntBASIC2.75□□□□□ -1.97
HOXA1P49639 RNU6-254P-201ENST00000363377 107 ntBASIC2.75□□□□□ -1.97
HOXA1P49639 RNU6-82P-201ENST00000363970 107 ntBASIC2.75□□□□□ -1.97
HOXA1P49639 RNU6-384P-201ENST00000364900 104 ntBASIC2.75□□□□□ -1.97
HOXA1P49639 Y_RNA.301-201ENST00000364990 103 ntBASIC2.75□□□□□ -1.97
HOXA1P49639 RNU1-64P-201ENST00000365443 163 ntBASIC2.75□□□□□ -1.97
HOXA1P49639 Y_RNA.530-201ENST00000384587 101 ntBASIC2.75□□□□□ -1.97
HOXA1P49639 TRAV26-1-201ENST00000390455 537 ntAPPRIS P1 BASIC2.75□□□□□ -1.97
HOXA1P49639 RNU6-510P-201ENST00000391239 108 ntBASIC2.75□□□□□ -1.97
HOXA1P49639 AL139095.1-201ENST00000404326 391 ntBASIC2.75□□□□□ -1.97
HOXA1P49639 RNU2-3P-201ENST00000410144 191 ntBASIC2.75□□□□□ -1.97
HOXA1P49639 RNU2-68P-201ENST00000410878 191 ntBASIC2.75□□□□□ -1.97
HOXA1P49639 ATP5A1P2-201ENST00000412323 255 ntBASIC2.75□□□□□ -1.97
HOXA1P49639 AC007314.1-201ENST00000414538 565 ntTSL 4 BASIC2.75□□□□□ -1.97
HOXA1P49639 RPL32P35-201ENST00000415214 394 ntBASIC2.75□□□□□ -1.97
HOXA1P49639 ARL5AP1-201ENST00000418991 388 ntBASIC2.75□□□□□ -1.97
HOXA1P49639 PGBD4P6-201ENST00000421501 610 ntBASIC2.75□□□□□ -1.97
HOXA1P49639 AC007560.1-201ENST00000426912 237 ntBASIC2.75□□□□□ -1.97
HOXA1P49639 LINC01757-201ENST00000435552 480 ntTSL 2 BASIC2.75□□□□□ -1.97
HOXA1P49639 AF274573.2-201ENST00000437772 520 ntTSL 5 BASIC2.75□□□□□ -1.97
HOXA1P49639 SNORD105B-201ENST00000458770 79 ntBASIC2.75□□□□□ -1.97
HOXA1P49639 AC006445.2-201ENST00000510061 472 ntBASIC2.75□□□□□ -1.97
Retrieved 100 of 98,524 protein–RNA pairs in 140.3 ms