Protein–RNA interactions for Protein: P39880

CUX1, Homeobox protein cut-like 1, humanhuman

Predictions only

Length 1,505 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1P39880 AC009754.1-201ENST00000566282 540 ntTSL 4 BASIC0.71□□□□□ -2.3
CUX1P39880 HMGN2P15-201ENST00000585707 270 ntBASIC0.71□□□□□ -2.3
CUX1P39880 RNU6-1083P-201ENST00000384022 107 ntBASIC0.7□□□□□ -2.3
CUX1P39880 MIR325-201ENST00000385260 98 ntBASIC0.7□□□□□ -2.3
CUX1P39880 SNORA40.19-201ENST00000390846 128 ntBASIC0.7□□□□□ -2.3
CUX1P39880 NDUFB4P7-201ENST00000423198 363 ntBASIC0.7□□□□□ -2.3
CUX1P39880 NAALADL2-AS2-201ENST00000424690 1038 ntTSL 5 BASIC0.7□□□□□ -2.3
CUX1P39880 AL080284.1-201ENST00000434493 442 ntTSL 2 BASIC0.7□□□□□ -2.3
CUX1P39880 AC027031.1-201ENST00000517318 489 ntTSL 3 BASIC0.7□□□□□ -2.3
CUX1P39880 AC091047.1-201ENST00000533344 552 ntTSL 4 BASIC0.7□□□□□ -2.3
CUX1P39880 AC009974.1-201ENST00000608881 455 ntBASIC0.7□□□□□ -2.3
CUX1P39880 AC104763.3-201ENST00000613765 618 ntBASIC0.7□□□□□ -2.3
CUX1P39880 DIRC1-201ENST00000308100 1037 ntAPPRIS P1 TSL 1 (best) BASIC0.69□□□□□ -2.3
CUX1P39880 AL162411.1-201ENST00000413145 526 ntTSL 2 BASIC0.69□□□□□ -2.3
CUX1P39880 AC083875.1-201ENST00000419509 405 ntBASIC0.69□□□□□ -2.3
CUX1P39880 AC092634.2-201ENST00000428146 1010 ntBASIC0.69□□□□□ -2.3
CUX1P39880 TRAPPC2P8-201ENST00000440676 396 ntBASIC0.69□□□□□ -2.3
CUX1P39880 TRAPPC2P3-201ENST00000443200 321 ntBASIC0.69□□□□□ -2.3
CUX1P39880 AL354824.2-201ENST00000458004 446 ntTSL 3 BASIC0.69□□□□□ -2.3
CUX1P39880 AC092892.1-201ENST00000496067 327 ntTSL 5 BASIC0.69□□□□□ -2.3
CUX1P39880 AC114912.1-201ENST00000503394 546 ntTSL 3 BASIC0.69□□□□□ -2.3
CUX1P39880 AC111000.5-201ENST00000506559 1178 ntBASIC0.69□□□□□ -2.3
CUX1P39880 UBL5P1-201ENST00000507979 193 ntBASIC0.69□□□□□ -2.3
CUX1P39880 AC121161.1-201ENST00000510606 652 ntBASIC0.69□□□□□ -2.3
CUX1P39880 AC093677.1-201ENST00000514414 678 ntBASIC0.69□□□□□ -2.3
CUX1P39880 HAUS1P3-201ENST00000523909 662 ntBASIC0.69□□□□□ -2.3
CUX1P39880 AL049870.4-201ENST00000555741 486 ntBASIC0.69□□□□□ -2.3
CUX1P39880 AC019288.1-201ENST00000557918 224 ntBASIC0.69□□□□□ -2.3
CUX1P39880 AP001269.3-201ENST00000588718 329 ntBASIC0.69□□□□□ -2.3
CUX1P39880 Z99571.1-201ENST00000636677 394 ntBASIC0.69□□□□□ -2.3
CUX1P39880 LINC01938-201ENST00000521341 1864 ntTSL 2 BASIC0.69□□□□□ -2.3
CUX1P39880 TXNDC8-203ENST00000374511 472 ntAPPRIS ALT2 TSL 5 BASIC0.69□□□□□ -2.3
CUX1P39880 MIR518A2-201ENST00000384966 87 ntBASIC0.69□□□□□ -2.3
CUX1P39880 MIR1303-201ENST00000408625 86 ntBASIC0.69□□□□□ -2.3
CUX1P39880 Z95118.1-201ENST00000421372 247 ntBASIC0.69□□□□□ -2.3
CUX1P39880 AC114808.2-201ENST00000428335 536 ntTSL 4 BASIC0.69□□□□□ -2.3
CUX1P39880 TRAPPC13P1-201ENST00000435991 1062 ntBASIC0.69□□□□□ -2.3
CUX1P39880 RNU6-775P-201ENST00000459318 96 ntBASIC0.69□□□□□ -2.3
CUX1P39880 TRBVB-201ENST00000477100 408 ntBASIC0.69□□□□□ -2.3
CUX1P39880 BOLA3P3-201ENST00000505182 232 ntBASIC0.69□□□□□ -2.3
CUX1P39880 AC034223.1-201ENST00000511054 599 ntTSL 3 BASIC0.69□□□□□ -2.3
CUX1P39880 CASP1-212ENST00000531166 300 ntTSL 5 BASIC0.69□□□□□ -2.3
CUX1P39880 AC023050.2-201ENST00000544968 387 ntBASIC0.69□□□□□ -2.3
CUX1P39880 HMGN1P30-201ENST00000589286 268 ntBASIC0.69□□□□□ -2.3
CUX1P39880 AC010615.3-201ENST00000597319 394 ntBASIC0.69□□□□□ -2.3
CUX1P39880 AC008121.1-201ENST00000603244 268 ntBASIC0.69□□□□□ -2.3
CUX1P39880 AL158032.1-201ENST00000605401 106 ntBASIC0.69□□□□□ -2.3
CUX1P39880 AC110792.4-201ENST00000609843 298 ntBASIC0.69□□□□□ -2.3
CUX1P39880 AL138478.1-201ENST00000612252 832 ntBASIC0.69□□□□□ -2.3
CUX1P39880 HSBP1P2-201ENST00000299671 229 ntBASIC0.68□□□□□ -2.3
CUX1P39880 NDUFS5P1-201ENST00000405668 289 ntBASIC0.68□□□□□ -2.3
CUX1P39880 AL606490.4-201ENST00000423117 127 ntBASIC0.68□□□□□ -2.3
CUX1P39880 AC023128.1-201ENST00000432431 799 ntTSL 3 BASIC0.68□□□□□ -2.3
CUX1P39880 MTND4LP10-201ENST00000435146 291 ntBASIC0.68□□□□□ -2.3
CUX1P39880 AC097499.1-201ENST00000444277 208 ntBASIC0.68□□□□□ -2.3
CUX1P39880 PRPS1P1-201ENST00000445305 876 ntBASIC0.68□□□□□ -2.3
CUX1P39880 MRPS17P3-201ENST00000465453 385 ntBASIC0.68□□□□□ -2.3
CUX1P39880 LINC01495-201ENST00000532380 421 ntTSL 2 BASIC0.68□□□□□ -2.3
CUX1P39880 VBP1-203ENST00000535916 944 ntTSL 2 BASIC0.68□□□□□ -2.3
CUX1P39880 AC010175.1-201ENST00000538219 224 ntTSL 5 BASIC0.68□□□□□ -2.3
CUX1P39880 SNHG1-210ENST00000539303 240 ntTSL 3 BASIC0.68□□□□□ -2.3
CUX1P39880 MIR4422-201ENST00000581938 83 ntBASIC0.68□□□□□ -2.3
CUX1P39880 AC245748.3-201ENST00000588710 241 ntTSL 3 BASIC0.68□□□□□ -2.3
CUX1P39880 AC055876.5-201ENST00000605667 259 ntBASIC0.68□□□□□ -2.3
CUX1P39880 AC073968.1-201ENST00000618594 637 ntBASIC0.68□□□□□ -2.3
CUX1P39880 AC064852.1-201ENST00000427571 851 ntTSL 3 BASIC0.67□□□□□ -2.3
CUX1P39880 OFD1P13Y-201ENST00000431179 1232 ntBASIC0.67□□□□□ -2.3
CUX1P39880 CR769776.1-201ENST00000441254 787 ntBASIC0.67□□□□□ -2.3
CUX1P39880 AC135457.1-201ENST00000503553 664 ntTSL 3 BASIC0.67□□□□□ -2.3
CUX1P39880 AL359273.1-202ENST00000505585 905 ntTSL 1 (best) BASIC0.67□□□□□ -2.3
CUX1P39880 AC110296.1-201ENST00000515680 341 ntTSL 3 BASIC0.67□□□□□ -2.3
CUX1P39880 DEFB108D-201ENST00000527787 222 ntBASIC0.67□□□□□ -2.3
CUX1P39880 NDUFAF4P1-201ENST00000559425 519 ntBASIC0.67□□□□□ -2.3
CUX1P39880 AL139344.1-201ENST00000605228 195 ntBASIC0.67□□□□□ -2.3
CUX1P39880 AC106800.4-201ENST00000614905 153 ntBASIC0.67□□□□□ -2.3
CUX1P39880 AC083865.1-201ENST00000636634 831 ntBASIC0.67□□□□□ -2.3
CUX1P39880 TEX15-201ENST00000256246 10110 ntTSL 1 (best) BASIC0.66□□□□□ -2.3
CUX1P39880 U6atac.2-201ENST00000408644 118 ntBASIC0.66□□□□□ -2.3
CUX1P39880 AL356272.1-201ENST00000454538 832 ntTSL 2 BASIC0.66□□□□□ -2.3
CUX1P39880 RPL9P9-202ENST00000466501 579 ntBASIC0.66□□□□□ -2.3
CUX1P39880 SSR3-208ENST00000496050 579 ntTSL 4 BASIC0.66□□□□□ -2.3
CUX1P39880 MRPL42-203ENST00000547098 701 ntTSL 3 BASIC0.66□□□□□ -2.3
CUX1P39880 AC233702.2-202ENST00000562547 291 ntBASIC0.66□□□□□ -2.3
CUX1P39880 AC012435.1-202ENST00000568772 240 ntBASIC0.66□□□□□ -2.3
CUX1P39880 AP000403.1-201ENST00000603349 851 ntBASIC0.66□□□□□ -2.3
CUX1P39880 MIR6718-201ENST00000616153 80 ntBASIC0.66□□□□□ -2.3
CUX1P39880 AC009468.1-201ENST00000412800 437 ntTSL 3 BASIC0.65□□□□□ -2.31
CUX1P39880 AL160162.1-202ENST00000417654 244 ntTSL 3 BASIC0.65□□□□□ -2.31
CUX1P39880 AL034345.2-203ENST00000453417 383 ntTSL 3 BASIC0.65□□□□□ -2.31
CUX1P39880 GRM7-AS3-209ENST00000458713 454 ntTSL 3 BASIC0.65□□□□□ -2.31
CUX1P39880 RNU4-57P-201ENST00000515980 135 ntBASIC0.65□□□□□ -2.31
CUX1P39880 SCARNA1-201ENST00000517138 166 ntBASIC0.65□□□□□ -2.31
CUX1P39880 AL356432.3-201ENST00000568952 465 ntBASIC0.65□□□□□ -2.31
CUX1P39880 MIR3921-201ENST00000577308 85 ntBASIC0.65□□□□□ -2.31
CUX1P39880 MTCYBP22-201ENST00000603788 447 ntBASIC0.65□□□□□ -2.31
CUX1P39880 AL138963.2-201ENST00000605137 226 ntBASIC0.65□□□□□ -2.31
CUX1P39880 AC012676.2-201ENST00000619258 186 ntBASIC0.65□□□□□ -2.31
CUX1P39880 AL121890.5-201ENST00000620848 304 ntBASIC0.65□□□□□ -2.31
CUX1P39880 AC005832.2-201ENST00000538921 1430 ntBASIC0.65□□□□□ -2.31
CUX1P39880 SNORA2A-201ENST00000383885 135 ntBASIC0.64□□□□□ -2.31
Retrieved 100 of 98,524 protein–RNA pairs in 91.9 ms