Protein–RNA interactions for Protein: P38398

BRCA1, Breast cancer type 1 susceptibility protein, humanhuman

Known RBP Predictions only

Length 1,863 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1P38398 AC012370.1-201ENST00000419244 530 ntTSL 3 BASIC1.88□□□□□ -2.11
BRCA1P38398 AL024474.2-201ENST00000431309 501 ntTSL 3 BASIC1.88□□□□□ -2.11
BRCA1P38398 RPL36AP48-201ENST00000485521 314 ntBASIC1.88□□□□□ -2.11
BRCA1P38398 AF213884.2-201ENST00000510417 903 ntBASIC1.88□□□□□ -2.11
BRCA1P38398 RNU6-150P-201ENST00000516237 95 ntBASIC1.88□□□□□ -2.11
BRCA1P38398 RNU6-390P-201ENST00000516259 103 ntBASIC1.88□□□□□ -2.11
BRCA1P38398 UTP23-205ENST00000520733 369 ntTSL 3 BASIC1.88□□□□□ -2.11
BRCA1P38398 CYCSP26-201ENST00000534107 320 ntBASIC1.88□□□□□ -2.11
BRCA1P38398 CYCSP2-201ENST00000558168 301 ntBASIC1.88□□□□□ -2.11
BRCA1P38398 RPS15AP11-201ENST00000594193 385 ntBASIC1.88□□□□□ -2.11
BRCA1P38398 AC005261.5-201ENST00000596280 355 ntBASIC1.88□□□□□ -2.11
BRCA1P38398 AL391813.1-201ENST00000603098 260 ntBASIC1.88□□□□□ -2.11
BRCA1P38398 AC018645.2-201ENST00000609151 472 ntBASIC1.88□□□□□ -2.11
BRCA1P38398 DUSP12P1-201ENST00000612874 516 ntBASIC1.88□□□□□ -2.11
BRCA1P38398 DLEU1_2.1-201ENST00000617920 342 ntBASIC1.88□□□□□ -2.11
BRCA1P38398 PTP4A2-219ENST00000626355 606 ntTSL 5 BASIC1.88□□□□□ -2.11
BRCA1P38398 AL445984.1-201ENST00000637834 659 ntBASIC1.88□□□□□ -2.11
BRCA1P38398 ZNF209P-201ENST00000593450 2304 ntBASIC1.88□□□□□ -2.11
BRCA1P38398 MEIG1-201ENST00000378240 507 ntAPPRIS P1 TSL 2 BASIC1.88□□□□□ -2.11
BRCA1P38398 RNU4-72P-201ENST00000410754 173 ntBASIC1.88□□□□□ -2.11
BRCA1P38398 AL445989.1-202ENST00000418943 776 ntTSL 2 BASIC1.88□□□□□ -2.11
BRCA1P38398 DNAJA1P2-201ENST00000421360 1197 ntBASIC1.88□□□□□ -2.11
BRCA1P38398 RAC1P6-201ENST00000423911 575 ntBASIC1.88□□□□□ -2.11
BRCA1P38398 ISCA1P1-201ENST00000426679 387 ntBASIC1.88□□□□□ -2.11
BRCA1P38398 BRK1P2-201ENST00000442875 223 ntBASIC1.88□□□□□ -2.11
BRCA1P38398 MTATP6P30-201ENST00000443540 664 ntBASIC1.88□□□□□ -2.11
BRCA1P38398 AC244505.5-201ENST00000443639 207 ntBASIC1.88□□□□□ -2.11
BRCA1P38398 AL353148.1-201ENST00000449761 463 ntTSL 2 BASIC1.88□□□□□ -2.11
BRCA1P38398 RPL12P25-201ENST00000455592 494 ntBASIC1.88□□□□□ -2.11
BRCA1P38398 AC117462.1-201ENST00000461186 554 ntTSL 4 BASIC1.88□□□□□ -2.11
BRCA1P38398 RPL22P13-201ENST00000493291 347 ntBASIC1.88□□□□□ -2.11
BRCA1P38398 UBA6-AS1-204ENST00000502758 547 ntTSL 4 BASIC1.88□□□□□ -2.11
BRCA1P38398 AC026780.2-201ENST00000503489 730 ntTSL 5 BASIC1.88□□□□□ -2.11
BRCA1P38398 AP000907.2-201ENST00000530827 353 ntBASIC1.88□□□□□ -2.11
BRCA1P38398 AC118273.2-201ENST00000532092 465 ntBASIC1.88□□□□□ -2.11
BRCA1P38398 DISC1FP1-204ENST00000563681 466 ntTSL 3 BASIC1.88□□□□□ -2.11
BRCA1P38398 AL513324.1-201ENST00000575236 632 ntTSL 5 BASIC1.88□□□□□ -2.11
BRCA1P38398 MIR4658-201ENST00000584344 65 ntBASIC1.88□□□□□ -2.11
BRCA1P38398 AC011477.3-201ENST00000585571 403 ntTSL 5 BASIC1.88□□□□□ -2.11
BRCA1P38398 AC080078.3-201ENST00000605407 463 ntBASIC1.88□□□□□ -2.11
BRCA1P38398 AC090186.1-201ENST00000605991 572 ntBASIC1.88□□□□□ -2.11
BRCA1P38398 CYSLTR1-201ENST00000373304 2576 ntAPPRIS P1 TSL 1 (best) BASIC1.88□□□□□ -2.11
BRCA1P38398 RNU6-748P-201ENST00000384648 107 ntBASIC1.87□□□□□ -2.11
BRCA1P38398 AL445123.1-201ENST00000422023 446 ntTSL 2 BASIC1.87□□□□□ -2.11
BRCA1P38398 FABP5P14-201ENST00000437273 393 ntBASIC1.87□□□□□ -2.11
BRCA1P38398 AL138830.2-202ENST00000446358 786 ntTSL 2 BASIC1.87□□□□□ -2.11
BRCA1P38398 LINC00374-201ENST00000454780 800 ntTSL 3 BASIC1.87□□□□□ -2.11
BRCA1P38398 AC110296.1-201ENST00000515680 341 ntTSL 3 BASIC1.87□□□□□ -2.11
BRCA1P38398 RNU6-1223P-201ENST00000517124 104 ntBASIC1.87□□□□□ -2.11
BRCA1P38398 AC084851.1-201ENST00000529105 249 ntBASIC1.87□□□□□ -2.11
BRCA1P38398 AC007598.1-202ENST00000561528 435 ntTSL 3 BASIC1.87□□□□□ -2.11
BRCA1P38398 AL391001.1-201ENST00000602747 715 ntBASIC1.87□□□□□ -2.11
BRCA1P38398 AC069431.2-201ENST00000604149 1099 ntBASIC1.87□□□□□ -2.11
BRCA1P38398 AC092953.2-201ENST00000608000 699 ntBASIC1.87□□□□□ -2.11
BRCA1P38398 GPR171-203ENST00000617554 960 ntAPPRIS P1 BASIC1.87□□□□□ -2.11
BRCA1P38398 hsa-mir-3158-1.1-201ENST00000637571 81 ntBASIC1.87□□□□□ -2.11
BRCA1P38398 KIF20B-202ENST00000371728 6419 ntAPPRIS ALT2 TSL 1 (best) BASIC1.87□□□□□ -2.11
BRCA1P38398 AC025539.1-201ENST00000515343 4019 ntTSL 2 BASIC1.86□□□□□ -2.11
BRCA1P38398 Y_RNA.234-201ENST00000364409 97 ntBASIC1.86□□□□□ -2.11
BRCA1P38398 RNU6-342P-201ENST00000384521 104 ntBASIC1.86□□□□□ -2.11
BRCA1P38398 MIR19A-201ENST00000384878 82 ntBASIC1.86□□□□□ -2.11
BRCA1P38398 AC073311.1-201ENST00000420146 505 ntTSL 5 BASIC1.86□□□□□ -2.11
BRCA1P38398 RPS3AP44-201ENST00000425466 790 ntBASIC1.86□□□□□ -2.11
BRCA1P38398 BX005214.1-201ENST00000427327 476 ntTSL 5 BASIC1.86□□□□□ -2.11
BRCA1P38398 GTF2IP20-201ENST00000431663 360 ntBASIC1.86□□□□□ -2.11
BRCA1P38398 AC104688.1-201ENST00000447158 419 ntTSL 3 BASIC1.86□□□□□ -2.11
BRCA1P38398 TPT1P14-201ENST00000448018 505 ntBASIC1.86□□□□□ -2.11
BRCA1P38398 AC006042.4-201ENST00000451066 692 ntTSL 5 BASIC1.86□□□□□ -2.11
BRCA1P38398 AC012308.1-201ENST00000451232 178 ntBASIC1.86□□□□□ -2.11
BRCA1P38398 HMGB1P36-201ENST00000487709 576 ntBASIC1.86□□□□□ -2.11
BRCA1P38398 AC008883.2-201ENST00000505796 414 ntTSL 3 BASIC1.86□□□□□ -2.11
BRCA1P38398 MTND5P13-201ENST00000513046 1079 ntBASIC1.86□□□□□ -2.11
BRCA1P38398 LINC02484-202ENST00000514877 546 ntTSL 3 BASIC1.86□□□□□ -2.11
BRCA1P38398 MIR4782-201ENST00000577987 79 ntBASIC1.86□□□□□ -2.11
BRCA1P38398 AC136443.5-201ENST00000603741 370 ntBASIC1.86□□□□□ -2.11
BRCA1P38398 AC005014.3-201ENST00000605985 190 ntBASIC1.86□□□□□ -2.11
BRCA1P38398 AL590491.2-201ENST00000614608 499 ntTSL 5 BASIC1.86□□□□□ -2.11
BRCA1P38398 MIR5739-201ENST00000619803 80 ntBASIC1.86□□□□□ -2.11
BRCA1P38398 AP002791.1-201ENST00000623291 381 ntBASIC1.86□□□□□ -2.11
BRCA1P38398 OR2L2-202ENST00000641771 4300 ntAPPRIS P1 BASIC1.86□□□□□ -2.11
BRCA1P38398 SPINT4-201ENST00000279058 512 ntAPPRIS P1 TSL 1 (best) BASIC1.86□□□□□ -2.11
BRCA1P38398 RNU6-461P-201ENST00000364195 107 ntBASIC1.86□□□□□ -2.11
BRCA1P38398 RNU6-906P-201ENST00000384700 70 ntBASIC1.86□□□□□ -2.11
BRCA1P38398 AC064871.1-202ENST00000413954 382 ntTSL 5 BASIC1.86□□□□□ -2.11
BRCA1P38398 AC007179.1-201ENST00000415159 438 ntTSL 3 BASIC1.86□□□□□ -2.11
BRCA1P38398 GRM7-AS3-202ENST00000417482 454 ntTSL 3 BASIC1.86□□□□□ -2.11
BRCA1P38398 EDNRB-AS1-201ENST00000422405 601 ntTSL 5 BASIC1.86□□□□□ -2.11
BRCA1P38398 AC009313.1-201ENST00000425470 503 ntTSL 3 BASIC1.86□□□□□ -2.11
BRCA1P38398 USP9YP11-201ENST00000427537 717 ntBASIC1.86□□□□□ -2.11
BRCA1P38398 ATG12P2-201ENST00000456830 416 ntBASIC1.86□□□□□ -2.11
BRCA1P38398 AL606519.1-201ENST00000458146 580 ntTSL 2 BASIC1.86□□□□□ -2.11
BRCA1P38398 COX6CP14-201ENST00000469580 174 ntBASIC1.86□□□□□ -2.11
BRCA1P38398 RPL7P18-201ENST00000478965 734 ntBASIC1.86□□□□□ -2.11
BRCA1P38398 RNU6-927P-201ENST00000516199 100 ntBASIC1.86□□□□□ -2.11
BRCA1P38398 RNA5SP471-201ENST00000516971 106 ntBASIC1.86□□□□□ -2.11
BRCA1P38398 AC135279.1-201ENST00000543493 504 ntBASIC1.86□□□□□ -2.11
BRCA1P38398 AC098848.1-201ENST00000588466 567 ntTSL 4 BASIC1.86□□□□□ -2.11
BRCA1P38398 AC012594.1-269ENST00000600489 628 ntTSL 5 BASIC1.86□□□□□ -2.11
BRCA1P38398 HMGB1P24-202ENST00000615653 685 ntBASIC1.86□□□□□ -2.11
BRCA1P38398 AL391597.2-201ENST00000635698 479 ntTSL 5 BASIC1.86□□□□□ -2.11
Retrieved 100 of 98,524 protein–RNA pairs in 103.4 ms