Protein–RNA interactions for Protein: P35548

MSX2, Homeobox protein MSX-2, humanhuman

Predicted RBP Predictions only

Length 267 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX2P35548 RPS15AP6-201ENST00000420703 385 ntBASIC3.73□□□□□ -1.81
MSX2P35548 AL121872.1-202ENST00000435867 308 ntTSL 5 BASIC3.73□□□□□ -1.81
MSX2P35548 TMEM212-AS1-201ENST00000449106 427 ntTSL 3 BASIC3.73□□□□□ -1.81
MSX2P35548 AL441989.1-201ENST00000454204 382 ntTSL 3 BASIC3.73□□□□□ -1.81
MSX2P35548 RNA5SP246-201ENST00000458909 119 ntBASIC3.73□□□□□ -1.81
MSX2P35548 HSPE1P6-201ENST00000479457 291 ntBASIC3.73□□□□□ -1.81
MSX2P35548 FO393415.2-201ENST00000480085 343 ntBASIC3.73□□□□□ -1.81
MSX2P35548 RN7SL810P-201ENST00000493031 276 ntBASIC3.73□□□□□ -1.81
MSX2P35548 SNORA31.8-201ENST00000516327 108 ntBASIC3.73□□□□□ -1.81
MSX2P35548 AC087664.2-201ENST00000522898 551 ntTSL 4 BASIC3.73□□□□□ -1.81
MSX2P35548 LINC02442-202ENST00000540761 382 ntTSL 2 BASIC3.73□□□□□ -1.81
MSX2P35548 LINC02350-201ENST00000544419 480 ntTSL 3 BASIC3.73□□□□□ -1.81
MSX2P35548 AL355922.1-201ENST00000555624 337 ntTSL 3 BASIC3.73□□□□□ -1.81
MSX2P35548 EGLN3-AS1-201ENST00000555922 308 ntTSL 3 BASIC3.73□□□□□ -1.81
MSX2P35548 AC020661.3-201ENST00000558101 414 ntTSL 3 BASIC3.73□□□□□ -1.81
MSX2P35548 AC090877.1-201ENST00000561418 344 ntBASIC3.73□□□□□ -1.81
MSX2P35548 AC025272.1-201ENST00000569661 483 ntTSL 2 BASIC3.73□□□□□ -1.81
MSX2P35548 MIR4277-201ENST00000578298 84 ntBASIC3.73□□□□□ -1.81
MSX2P35548 CPDP1-201ENST00000579660 283 ntBASIC3.73□□□□□ -1.81
MSX2P35548 MIR5096-201ENST00000583713 70 ntBASIC3.73□□□□□ -1.81
MSX2P35548 AC078899.3-201ENST00000599065 212 ntBASIC3.73□□□□□ -1.81
MSX2P35548 AL020997.2-201ENST00000602607 184 ntBASIC3.73□□□□□ -1.81
MSX2P35548 AC138627.2-201ENST00000624202 601 ntBASIC3.73□□□□□ -1.81
MSX2P35548 LINC02086-205ENST00000628749 679 ntTSL 5 BASIC3.73□□□□□ -1.81
MSX2P35548 AL512643.1-201ENST00000635735 524 ntBASIC3.73□□□□□ -1.81
MSX2P35548 AC244205.2-202ENST00000635781 342 ntBASIC3.73□□□□□ -1.81
MSX2P35548 MUC7-203ENST00000456088 2479 ntAPPRIS P2 TSL 4 BASIC3.73□□□□□ -1.81
MSX2P35548 TBC1D15-210ENST00000485960 2489 ntAPPRIS P1 TSL 1 (best) BASIC3.73□□□□□ -1.81
MSX2P35548 FRYL-205ENST00000503238 11103 ntAPPRIS P1 TSL 5 BASIC3.73□□□□□ -1.81
MSX2P35548 AC032011.1-201ENST00000611703 1549 ntBASIC3.73□□□□□ -1.81
MSX2P35548 SEMA3D-201ENST00000284136 6265 ntAPPRIS P1 TSL 5 BASIC3.73□□□□□ -1.81
MSX2P35548 SGIP1-206ENST00000435165 3646 ntAPPRIS ALT2 TSL 2 BASIC3.73□□□□□ -1.81
MSX2P35548 RXFP1-201ENST00000307765 3842 ntAPPRIS P1 TSL 1 (best) BASIC3.73□□□□□ -1.81
MSX2P35548 MTND5P27-201ENST00000428871 1720 ntBASIC3.73□□□□□ -1.81
MSX2P35548 CALCRL-203ENST00000410068 1984 ntAPPRIS P1 TSL 2 BASIC3.72□□□□□ -1.81
MSX2P35548 ABCA12-202ENST00000389661 7005 ntTSL 1 (best) BASIC3.72□□□□□ -1.81
MSX2P35548 PAPOLA-202ENST00000392990 2588 ntTSL 5 BASIC3.72□□□□□ -1.81
MSX2P35548 FAP-214ENST00000627638 2569 ntAPPRIS ALT1 TSL 5 BASIC3.72□□□□□ -1.81
MSX2P35548 TEX30-201ENST00000376019 1689 ntTSL 2 BASIC3.72□□□□□ -1.81
MSX2P35548 RNA5SP399-201ENST00000364003 117 ntBASIC3.72□□□□□ -1.81
MSX2P35548 RNU6-1179P-201ENST00000384667 107 ntBASIC3.72□□□□□ -1.81
MSX2P35548 RNU6-713P-201ENST00000384761 107 ntBASIC3.72□□□□□ -1.81
MSX2P35548 AL603908.1-201ENST00000406098 201 ntBASIC3.72□□□□□ -1.81
MSX2P35548 RPL23AP26-201ENST00000412728 464 ntBASIC3.72□□□□□ -1.81
MSX2P35548 CRYBB2P1-203ENST00000415709 538 ntBASIC3.72□□□□□ -1.81
MSX2P35548 LINC01204-201ENST00000422047 639 ntTSL 3 BASIC3.72□□□□□ -1.81
MSX2P35548 ELOCP20-201ENST00000422460 345 ntBASIC3.72□□□□□ -1.81
MSX2P35548 AL590999.1-206ENST00000437947 436 ntTSL 3 BASIC3.72□□□□□ -1.81
MSX2P35548 AC011897.1-201ENST00000450715 346 ntTSL 3 BASIC3.72□□□□□ -1.81
MSX2P35548 RNU6-1132P-201ENST00000459214 107 ntBASIC3.72□□□□□ -1.81
MSX2P35548 RPS15AP34-201ENST00000487776 387 ntBASIC3.72□□□□□ -1.81
MSX2P35548 ZCCHC10-206ENST00000509008 608 ntAPPRIS ALT2 TSL 2 BASIC3.72□□□□□ -1.81
MSX2P35548 RN7SKP83-201ENST00000516512 178 ntBASIC3.72□□□□□ -1.81
MSX2P35548 RNU6-1315P-201ENST00000517187 99 ntBASIC3.72□□□□□ -1.81
MSX2P35548 IGHV3-76-201ENST00000522465 295 ntBASIC3.72□□□□□ -1.81
MSX2P35548 IGKV2D-19-201ENST00000523346 262 ntBASIC3.72□□□□□ -1.81
MSX2P35548 AP005436.2-201ENST00000528458 252 ntTSL 5 BASIC3.72□□□□□ -1.81
MSX2P35548 AP006287.2-201ENST00000529036 502 ntTSL 2 BASIC3.72□□□□□ -1.81
MSX2P35548 AC087463.1-201ENST00000568541 556 ntTSL 2 BASIC3.72□□□□□ -1.81
MSX2P35548 AL122017.1-202ENST00000570612 319 ntTSL 5 BASIC3.72□□□□□ -1.81
MSX2P35548 RAC1P9-201ENST00000604990 392 ntBASIC3.72□□□□□ -1.81
MSX2P35548 MIR7151-201ENST00000617477 60 ntBASIC3.72□□□□□ -1.81
MSX2P35548 ZNF266-204ENST00000590306 3317 ntAPPRIS P1 TSL 1 (best) BASIC3.72□□□□□ -1.81
MSX2P35548 RGPD4-201ENST00000408999 5464 ntAPPRIS P1 TSL 1 (best) BASIC3.72□□□□□ -1.81
MSX2P35548 TNPO1P3-201ENST00000436471 2662 ntBASIC3.72□□□□□ -1.81
MSX2P35548 ZNF479-201ENST00000319636 1811 ntAPPRIS P1 TSL 1 (best) BASIC3.72□□□□□ -1.81
MSX2P35548 ANKRD36C-201ENST00000295246 2272 ntTSL 5 BASIC3.72□□□□□ -1.81
MSX2P35548 ZNF92-204ENST00000450302 2957 ntTSL 1 (best) BASIC3.72□□□□□ -1.81
MSX2P35548 Y_RNA.26-201ENST00000362539 101 ntBASIC3.71□□□□□ -1.82
MSX2P35548 RNU6-173P-201ENST00000364215 104 ntBASIC3.71□□□□□ -1.82
MSX2P35548 Y_RNA.350-201ENST00000365409 98 ntBASIC3.71□□□□□ -1.82
MSX2P35548 AC068538.1-201ENST00000376856 336 ntBASIC3.71□□□□□ -1.82
MSX2P35548 Y_RNA.483-201ENST00000384380 101 ntBASIC3.71□□□□□ -1.82
MSX2P35548 Y_RNA.552-201ENST00000384665 112 ntBASIC3.71□□□□□ -1.82
MSX2P35548 HLFP1-201ENST00000402375 499 ntBASIC3.71□□□□□ -1.82
MSX2P35548 AL138878.1-201ENST00000405131 347 ntBASIC3.71□□□□□ -1.82
MSX2P35548 AC007271.1-201ENST00000428188 382 ntTSL 3 BASIC3.71□□□□□ -1.82
MSX2P35548 AL078601.2-201ENST00000429444 474 ntTSL 2 BASIC3.71□□□□□ -1.82
MSX2P35548 RPS29P17-201ENST00000430795 166 ntBASIC3.71□□□□□ -1.82
MSX2P35548 AL360169.1-201ENST00000435116 143 ntTSL 5 BASIC3.71□□□□□ -1.82
MSX2P35548 SNORD127-201ENST00000458892 86 ntBASIC3.71□□□□□ -1.82
MSX2P35548 RPS4XP13-201ENST00000483219 789 ntBASIC3.71□□□□□ -1.82
MSX2P35548 HMGN1P11-201ENST00000508668 303 ntBASIC3.71□□□□□ -1.82
MSX2P35548 MTND1P19-201ENST00000511780 315 ntBASIC3.71□□□□□ -1.82
MSX2P35548 AC099522.1-202ENST00000514718 367 ntBASIC3.71□□□□□ -1.82
MSX2P35548 ACA59.1-201ENST00000515966 143 ntBASIC3.71□□□□□ -1.82
MSX2P35548 Y_RNA.687-201ENST00000516558 91 ntBASIC3.71□□□□□ -1.82
MSX2P35548 RNU7-4P-201ENST00000516961 62 ntBASIC3.71□□□□□ -1.82
MSX2P35548 UQCRB-202ENST00000517523 515 ntTSL 2 BASIC3.71□□□□□ -1.82
MSX2P35548 AC103796.1-201ENST00000530663 358 ntTSL 1 (best) BASIC3.71□□□□□ -1.82
MSX2P35548 TRAV37-201ENST00000553906 342 ntBASIC3.71□□□□□ -1.82
MSX2P35548 AC104002.1-201ENST00000557025 380 ntTSL 3 BASIC3.71□□□□□ -1.82
MSX2P35548 AC006600.1-201ENST00000572529 153 ntBASIC3.71□□□□□ -1.82
MSX2P35548 AC002558.3-201ENST00000574021 401 ntTSL 3 BASIC3.71□□□□□ -1.82
MSX2P35548 MIR1273C-201ENST00000578669 77 ntBASIC3.71□□□□□ -1.82
MSX2P35548 MIR4273-201ENST00000582824 84 ntBASIC3.71□□□□□ -1.82
MSX2P35548 AL158827.2-201ENST00000602494 330 ntBASIC3.71□□□□□ -1.82
MSX2P35548 AC098826.3-201ENST00000603823 466 ntBASIC3.71□□□□□ -1.82
MSX2P35548 MTND4LP5-201ENST00000605152 292 ntBASIC3.71□□□□□ -1.82
MSX2P35548 AC004805.2-201ENST00000605382 482 ntBASIC3.71□□□□□ -1.82
Retrieved 100 of 98,524 protein–RNA pairs in 113.6 ms