Protein–RNA interactions for Protein: O60663

LMX1B, LIM homeobox transcription factor 1-beta, humanhuman

Predictions only

Length 402 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LMX1BO60663 SDHAF2-203ENST00000534878 523 ntTSL 2 BASIC2.87□□□□□ -1.95
LMX1BO60663 AC099793.1-201ENST00000567538 285 ntTSL 3 BASIC2.87□□□□□ -1.95
LMX1BO60663 MIR4325-201ENST00000583049 90 ntBASIC2.87□□□□□ -1.95
LMX1BO60663 AL162713.1-201ENST00000604480 262 ntBASIC2.87□□□□□ -1.95
LMX1BO60663 APOOP1-201ENST00000604695 592 ntBASIC2.87□□□□□ -1.95
LMX1BO60663 AL670379.4-201ENST00000605279 254 ntBASIC2.87□□□□□ -1.95
LMX1BO60663 Y_RNA.812-201ENST00000610788 101 ntBASIC2.87□□□□□ -1.95
LMX1BO60663 Y_RNA.784-201ENST00000613803 101 ntBASIC2.87□□□□□ -1.95
LMX1BO60663 AL162274.2-201ENST00000614406 332 ntBASIC2.87□□□□□ -1.95
LMX1BO60663 Y_RNA.787-201ENST00000616522 101 ntBASIC2.87□□□□□ -1.95
LMX1BO60663 Y_RNA.780-201ENST00000617336 101 ntBASIC2.87□□□□□ -1.95
LMX1BO60663 Y_RNA.801-201ENST00000619005 101 ntBASIC2.87□□□□□ -1.95
LMX1BO60663 XIST_intron.1-201ENST00000619444 68 ntBASIC2.87□□□□□ -1.95
LMX1BO60663 LRMP-221ENST00000636465 4540 ntAPPRIS ALT2 TSL 5 BASIC2.87□□□□□ -1.95
LMX1BO60663 CBLL1-201ENST00000222597 2003 ntAPPRIS ALT1 TSL 1 (best) BASIC2.86□□□□□ -1.95
LMX1BO60663 AL161457.2-203ENST00000590767 2663 ntTSL 5 BASIC2.86□□□□□ -1.95
LMX1BO60663 AF117829.1-206ENST00000621883 3802 ntBASIC2.86□□□□□ -1.95
LMX1BO60663 CYYR1-AS1-201ENST00000357401 3412 ntTSL 2 BASIC2.86□□□□□ -1.95
LMX1BO60663 STEAP4-201ENST00000301959 2321 ntTSL 1 (best) BASIC2.86□□□□□ -1.95
LMX1BO60663 Z83843.1-201ENST00000604070 3685 ntBASIC2.86□□□□□ -1.95
LMX1BO60663 NBPF20-201ENST00000369373 18760 ntAPPRIS ALT2 TSL 5 BASIC2.86□□□□□ -1.95
LMX1BO60663 Y_RNA.315-201ENST00000365117 102 ntBASIC2.86□□□□□ -1.95
LMX1BO60663 S100A12-201ENST00000368737 518 ntAPPRIS P1 TSL 1 (best) BASIC2.86□□□□□ -1.95
LMX1BO60663 SPRR2D-203ENST00000368757 800 ntAPPRIS P1 TSL 3 BASIC2.86□□□□□ -1.95
LMX1BO60663 Y_RNA.384-201ENST00000383909 102 ntBASIC2.86□□□□□ -1.95
LMX1BO60663 RNA5SP219-201ENST00000390940 113 ntBASIC2.86□□□□□ -1.95
LMX1BO60663 AC003092.1-201ENST00000415536 639 ntTSL 3 BASIC2.86□□□□□ -1.95
LMX1BO60663 MTND1P17-201ENST00000448961 204 ntBASIC2.86□□□□□ -1.95
LMX1BO60663 FABP5P13-201ENST00000452144 328 ntBASIC2.86□□□□□ -1.95
LMX1BO60663 AL353780.1-201ENST00000455583 458 ntTSL 2 BASIC2.86□□□□□ -1.95
LMX1BO60663 Y_RNA.639-201ENST00000458981 102 ntBASIC2.86□□□□□ -1.95
LMX1BO60663 AC092919.1-201ENST00000467896 229 ntTSL 2 BASIC2.86□□□□□ -1.95
LMX1BO60663 AC117503.1-201ENST00000472241 394 ntBASIC2.86□□□□□ -1.95
LMX1BO60663 AC126121.2-201ENST00000486137 698 ntTSL 3 BASIC2.86□□□□□ -1.95
LMX1BO60663 ATP1B3-AS1-201ENST00000492725 376 ntTSL 5 BASIC2.86□□□□□ -1.95
LMX1BO60663 AC110794.1-201ENST00000505816 425 ntBASIC2.86□□□□□ -1.95
LMX1BO60663 FCF1P8-201ENST00000510322 597 ntBASIC2.86□□□□□ -1.95
LMX1BO60663 RNU6-1069P-201ENST00000516612 133 ntBASIC2.86□□□□□ -1.95
LMX1BO60663 RNA5SP454-201ENST00000517231 127 ntBASIC2.86□□□□□ -1.95
LMX1BO60663 COPS8P3-201ENST00000526024 482 ntBASIC2.86□□□□□ -1.95
LMX1BO60663 AP005639.2-201ENST00000527592 928 ntBASIC2.86□□□□□ -1.95
LMX1BO60663 RGS4-209ENST00000531057 544 ntTSL 4 BASIC2.86□□□□□ -1.95
LMX1BO60663 AC027018.1-202ENST00000534723 383 ntTSL 3 BASIC2.86□□□□□ -1.95
LMX1BO60663 APOOP3-201ENST00000536787 586 ntBASIC2.86□□□□□ -1.95
LMX1BO60663 AP003174.2-201ENST00000544663 294 ntTSL 3 BASIC2.86□□□□□ -1.95
LMX1BO60663 AL163153.1-201ENST00000554223 283 ntBASIC2.86□□□□□ -1.95
LMX1BO60663 AL442663.2-201ENST00000554385 511 ntBASIC2.86□□□□□ -1.95
LMX1BO60663 TTN-AS1-212ENST00000582847 1036 ntTSL 5 BASIC2.86□□□□□ -1.95
LMX1BO60663 AC015911.6-201ENST00000588445 457 ntTSL 3 BASIC2.86□□□□□ -1.95
LMX1BO60663 AC023043.2-201ENST00000589678 1026 ntBASIC2.86□□□□□ -1.95
LMX1BO60663 AC006557.5-201ENST00000603126 811 ntBASIC2.86□□□□□ -1.95
LMX1BO60663 AL138889.2-201ENST00000603883 242 ntBASIC2.86□□□□□ -1.95
LMX1BO60663 ATP1B3P1-201ENST00000605365 821 ntBASIC2.86□□□□□ -1.95
LMX1BO60663 AL158032.1-201ENST00000605401 106 ntBASIC2.86□□□□□ -1.95
LMX1BO60663 AC124303.1-201ENST00000605703 360 ntBASIC2.86□□□□□ -1.95
LMX1BO60663 AC027045.1-201ENST00000609065 202 ntTSL 5 BASIC2.86□□□□□ -1.95
LMX1BO60663 AL138726.1-201ENST00000614873 333 ntBASIC2.86□□□□□ -1.95
LMX1BO60663 SMAD5-AS1_2.1-201ENST00000617906 131 ntBASIC2.86□□□□□ -1.95
LMX1BO60663 MIR6852-201ENST00000621699 66 ntBASIC2.86□□□□□ -1.95
LMX1BO60663 AC048347.1-201ENST00000624621 427 ntBASIC2.86□□□□□ -1.95
LMX1BO60663 BCLAF3-202ENST00000379682 3217 ntAPPRIS ALT2 TSL 5 BASIC2.86□□□□□ -1.95
LMX1BO60663 CASC1-205ENST00000545133 2146 ntAPPRIS ALT2 TSL 2 BASIC2.86□□□□□ -1.95
LMX1BO60663 MBNL3-205ENST00000370857 8760 ntTSL 5 BASIC2.86□□□□□ -1.95
LMX1BO60663 FMN2-207ENST00000545751 1913 ntTSL 5 BASIC2.85□□□□□ -1.95
LMX1BO60663 GPR18-203ENST00000397473 1660 ntAPPRIS P1 TSL 1 (best) BASIC2.85□□□□□ -1.95
LMX1BO60663 AGTR1-208ENST00000475347 1669 ntAPPRIS P1 TSL 3 BASIC2.85□□□□□ -1.95
LMX1BO60663 USP15-203ENST00000353364 14950 ntAPPRIS P3 TSL 1 (best) BASIC2.85□□□□□ -1.95
LMX1BO60663 TBC1D31-214ENST00000522420 3167 ntTSL 1 (best) BASIC2.85□□□□□ -1.95
LMX1BO60663 KNL1-202ENST00000399668 7607 ntAPPRIS ALT2 TSL 1 (best) BASIC2.85□□□□□ -1.95
LMX1BO60663 LGI1-201ENST00000371413 1247 ntTSL 1 (best) BASIC2.85□□□□□ -1.95
LMX1BO60663 SNORD116-11-201ENST00000383882 92 ntBASIC2.85□□□□□ -1.95
LMX1BO60663 RNU6-190P-201ENST00000384154 102 ntBASIC2.85□□□□□ -1.95
LMX1BO60663 RNU6-393P-201ENST00000384475 107 ntBASIC2.85□□□□□ -1.95
LMX1BO60663 RNU6-692P-201ENST00000384496 107 ntBASIC2.85□□□□□ -1.95
LMX1BO60663 Y_RNA.534-201ENST00000384599 112 ntBASIC2.85□□□□□ -1.95
LMX1BO60663 RNU6-817P-201ENST00000391083 104 ntBASIC2.85□□□□□ -1.95
LMX1BO60663 DEFB110-202ENST00000393660 189 ntAPPRIS ALT2 TSL 1 (best) BASIC2.85□□□□□ -1.95
LMX1BO60663 EI24P2-201ENST00000397776 1076 ntBASIC2.85□□□□□ -1.95
LMX1BO60663 AL139039.1-201ENST00000401900 692 ntBASIC2.85□□□□□ -1.95
LMX1BO60663 HSPE1P26-201ENST00000405341 275 ntBASIC2.85□□□□□ -1.95
LMX1BO60663 RNU6-1304P-201ENST00000411374 106 ntBASIC2.85□□□□□ -1.95
LMX1BO60663 AC245291.1-201ENST00000419501 328 ntBASIC2.85□□□□□ -1.95
LMX1BO60663 AL160275.3-201ENST00000423876 471 ntBASIC2.85□□□□□ -1.95
LMX1BO60663 AL353729.1-201ENST00000425044 720 ntBASIC2.85□□□□□ -1.95
LMX1BO60663 AC079799.1-201ENST00000430696 331 ntTSL 3 BASIC2.85□□□□□ -1.95
LMX1BO60663 AL451060.1-203ENST00000431307 362 ntTSL 3 BASIC2.85□□□□□ -1.95
LMX1BO60663 CST9LP2-201ENST00000437612 320 ntBASIC2.85□□□□□ -1.95
LMX1BO60663 AL359706.1-201ENST00000437748 315 ntTSL 3 BASIC2.85□□□□□ -1.95
LMX1BO60663 RPL32P28-201ENST00000443577 397 ntBASIC2.85□□□□□ -1.95
LMX1BO60663 AC125238.1-201ENST00000448842 249 ntBASIC2.85□□□□□ -1.95
LMX1BO60663 RNU7-167P-201ENST00000459160 62 ntBASIC2.85□□□□□ -1.95
LMX1BO60663 AC012081.1-201ENST00000462382 477 ntTSL 3 BASIC2.85□□□□□ -1.95
LMX1BO60663 OARD1-209ENST00000471367 401 ntTSL 2 BASIC2.85□□□□□ -1.95
LMX1BO60663 HSPE1P6-201ENST00000479457 291 ntBASIC2.85□□□□□ -1.95
LMX1BO60663 HMGB3P15-201ENST00000507326 574 ntBASIC2.85□□□□□ -1.95
LMX1BO60663 AC005921.1-201ENST00000510589 286 ntBASIC2.85□□□□□ -1.95
LMX1BO60663 PHBP14-201ENST00000512887 367 ntBASIC2.85□□□□□ -1.95
LMX1BO60663 RNU6-559P-201ENST00000516151 98 ntBASIC2.85□□□□□ -1.95
LMX1BO60663 RNU6-273P-201ENST00000516937 96 ntBASIC2.85□□□□□ -1.95
LMX1BO60663 ERHP1-201ENST00000523006 310 ntBASIC2.85□□□□□ -1.95
Retrieved 100 of 98,524 protein–RNA pairs in 138 ms