Protein–RNA interactions for Protein: Q9Y261

FOXA2, Hepatocyte nuclear factor 3-beta, humanhuman

Predicted RBP Predictions only

Length 457 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA2Q9Y261 CYCSP48-201ENST00000417124 323 ntBASIC2.37□□□□□ -2.03
FOXA2Q9Y261 AL139281.1-201ENST00000422120 335 ntBASIC2.37□□□□□ -2.03
FOXA2Q9Y261 LINC01351-201ENST00000424735 526 ntTSL 2 BASIC2.37□□□□□ -2.03
FOXA2Q9Y261 AC006041.1-201ENST00000425322 328 ntTSL 3 BASIC2.37□□□□□ -2.03
FOXA2Q9Y261 MTCO3P5-201ENST00000433620 714 ntBASIC2.37□□□□□ -2.03
FOXA2Q9Y261 U91324.1-201ENST00000442864 447 ntTSL 5 BASIC2.37□□□□□ -2.03
FOXA2Q9Y261 MTND2P4-201ENST00000445034 1004 ntBASIC2.37□□□□□ -2.03
FOXA2Q9Y261 HIGD1AP2-201ENST00000446367 280 ntBASIC2.37□□□□□ -2.03
FOXA2Q9Y261 AL671855.1-201ENST00000446875 1203 ntBASIC2.37□□□□□ -2.03
FOXA2Q9Y261 AC114501.3-201ENST00000453648 164 ntTSL 5 BASIC2.37□□□□□ -2.03
FOXA2Q9Y261 ITCH-AS1-201ENST00000454205 299 ntTSL 5 BASIC2.37□□□□□ -2.03
FOXA2Q9Y261 AC022364.2-201ENST00000457963 554 ntBASIC2.37□□□□□ -2.03
FOXA2Q9Y261 RNU6-956P-201ENST00000458868 103 ntBASIC2.37□□□□□ -2.03
FOXA2Q9Y261 RNU7-182P-201ENST00000459009 62 ntBASIC2.37□□□□□ -2.03
FOXA2Q9Y261 AC117440.1-201ENST00000474107 571 ntBASIC2.37□□□□□ -2.03
FOXA2Q9Y261 RPL23AP11-201ENST00000475260 469 ntBASIC2.37□□□□□ -2.03
FOXA2Q9Y261 MED28P2-201ENST00000475771 317 ntBASIC2.37□□□□□ -2.03
FOXA2Q9Y261 AL159163.1-201ENST00000507747 600 ntAPPRIS P1 TSL 5 BASIC2.37□□□□□ -2.03
FOXA2Q9Y261 MTCO3P28-201ENST00000513351 515 ntBASIC2.37□□□□□ -2.03
FOXA2Q9Y261 RNA5SP341-201ENST00000516261 117 ntBASIC2.37□□□□□ -2.03
FOXA2Q9Y261 MIR892C-201ENST00000516410 77 ntBASIC2.37□□□□□ -2.03
FOXA2Q9Y261 RNU5B-3P-201ENST00000516601 115 ntBASIC2.37□□□□□ -2.03
FOXA2Q9Y261 AC009812.2-201ENST00000517657 457 ntBASIC2.37□□□□□ -2.03
FOXA2Q9Y261 FAM92A1P1-201ENST00000528023 890 ntBASIC2.37□□□□□ -2.03
FOXA2Q9Y261 OR4R1P-201ENST00000529879 463 ntBASIC2.37□□□□□ -2.03
FOXA2Q9Y261 AC127894.1-201ENST00000548266 851 ntTSL 3 BASIC2.37□□□□□ -2.03
FOXA2Q9Y261 LINC02305-201ENST00000554142 476 ntTSL 3 BASIC2.37□□□□□ -2.03
FOXA2Q9Y261 MIR3913-1-201ENST00000577744 102 ntBASIC2.37□□□□□ -2.03
FOXA2Q9Y261 MIR4325-201ENST00000583049 90 ntBASIC2.37□□□□□ -2.03
FOXA2Q9Y261 RNASEH2B-AS1-206ENST00000601286 657 ntTSL 5 BASIC2.37□□□□□ -2.03
FOXA2Q9Y261 RNU6-91P-201ENST00000607774 107 ntBASIC2.37□□□□□ -2.03
FOXA2Q9Y261 AC096772.1-201ENST00000609146 564 ntBASIC2.37□□□□□ -2.03
FOXA2Q9Y261 AC109347.2-201ENST00000610220 349 ntBASIC2.37□□□□□ -2.03
FOXA2Q9Y261 AL020991.1-201ENST00000612314 373 ntBASIC2.37□□□□□ -2.03
FOXA2Q9Y261 AC244517.12-201ENST00000623581 663 ntBASIC2.37□□□□□ -2.03
FOXA2Q9Y261 AC138627.2-201ENST00000624202 601 ntBASIC2.37□□□□□ -2.03
FOXA2Q9Y261 SEPT14P19-203ENST00000633205 211 ntBASIC2.37□□□□□ -2.03
FOXA2Q9Y261 CHD9-203ENST00000447540 11509 ntTSL 5 BASIC2.37□□□□□ -2.03
FOXA2Q9Y261 EYS-202ENST00000342421 2168 ntTSL 1 (best) BASIC2.37□□□□□ -2.03
FOXA2Q9Y261 PRKACB-207ENST00000394838 4294 ntTSL 5 BASIC2.37□□□□□ -2.03
FOXA2Q9Y261 HSPA8P4-201ENST00000511877 1920 ntBASIC2.36□□□□□ -2.03
FOXA2Q9Y261 OR51A7-202ENST00000641490 2186 ntAPPRIS P1 BASIC2.36□□□□□ -2.03
FOXA2Q9Y261 ABCG2-204ENST00000515655 4276 ntTSL 1 (best) BASIC2.36□□□□□ -2.03
FOXA2Q9Y261 RNU6-74P-201ENST00000384235 107 ntBASIC2.36□□□□□ -2.03
FOXA2Q9Y261 RNU6-72P-201ENST00000384285 79 ntBASIC2.36□□□□□ -2.03
FOXA2Q9Y261 MIR454-201ENST00000390180 115 ntBASIC2.36□□□□□ -2.03
FOXA2Q9Y261 FGFR1OP2P1-201ENST00000395943 500 ntBASIC2.36□□□□□ -2.03
FOXA2Q9Y261 AL592148.1-201ENST00000413568 445 ntBASIC2.36□□□□□ -2.03
FOXA2Q9Y261 OR6C66P-201ENST00000414917 930 ntBASIC2.36□□□□□ -2.03
FOXA2Q9Y261 AC010731.2-201ENST00000415275 440 ntTSL 3 BASIC2.36□□□□□ -2.03
FOXA2Q9Y261 AL031779.1-201ENST00000415663 330 ntBASIC2.36□□□□□ -2.03
FOXA2Q9Y261 AL353621.1-201ENST00000418219 243 ntBASIC2.36□□□□□ -2.03
FOXA2Q9Y261 AL356134.1-201ENST00000419815 373 ntTSL 3 BASIC2.36□□□□□ -2.03
FOXA2Q9Y261 MTCYBP5-201ENST00000423752 1135 ntBASIC2.36□□□□□ -2.03
FOXA2Q9Y261 AC092573.2-202ENST00000437243 336 ntTSL 3 BASIC2.36□□□□□ -2.03
FOXA2Q9Y261 AC099566.1-201ENST00000442558 479 ntTSL 3 BASIC2.36□□□□□ -2.03
FOXA2Q9Y261 AL078587.1-201ENST00000448580 542 ntTSL 5 BASIC2.36□□□□□ -2.03
FOXA2Q9Y261 AL138900.1-201ENST00000449345 399 ntTSL 3 BASIC2.36□□□□□ -2.03
FOXA2Q9Y261 AC080014.1-201ENST00000496877 1201 ntBASIC2.36□□□□□ -2.03
FOXA2Q9Y261 CKS1BP2-201ENST00000497342 240 ntBASIC2.36□□□□□ -2.03
FOXA2Q9Y261 SAR1B-211ENST00000509937 455 ntTSL 5 BASIC2.36□□□□□ -2.03
FOXA2Q9Y261 AC117522.2-201ENST00000510049 657 ntBASIC2.36□□□□□ -2.03
FOXA2Q9Y261 RNA5SP503-201ENST00000517047 117 ntBASIC2.36□□□□□ -2.03
FOXA2Q9Y261 AC135279.1-201ENST00000543493 504 ntBASIC2.36□□□□□ -2.03
FOXA2Q9Y261 AC090023.1-201ENST00000545750 443 ntTSL 3 BASIC2.36□□□□□ -2.03
FOXA2Q9Y261 AC113146.1-202ENST00000560259 433 ntTSL 5 BASIC2.36□□□□□ -2.03
FOXA2Q9Y261 MIR5194-201ENST00000582634 120 ntBASIC2.36□□□□□ -2.03
FOXA2Q9Y261 AC068790.2-201ENST00000602601 557 ntBASIC2.36□□□□□ -2.03
FOXA2Q9Y261 AC087752.4-201ENST00000605911 462 ntBASIC2.36□□□□□ -2.03
FOXA2Q9Y261 AL627309.6-201ENST00000606857 840 ntBASIC2.36□□□□□ -2.03
FOXA2Q9Y261 AC090115.4-201ENST00000609970 188 ntBASIC2.36□□□□□ -2.03
FOXA2Q9Y261 AC023490.1-201ENST00000614584 375 ntTSL 2 BASIC2.36□□□□□ -2.03
FOXA2Q9Y261 AC010378.1-201ENST00000619270 362 ntBASIC2.36□□□□□ -2.03
FOXA2Q9Y261 AC011718.1-201ENST00000622906 375 ntTSL 1 (best) BASIC2.36□□□□□ -2.03
FOXA2Q9Y261 AC084035.1-201ENST00000634543 607 ntBASIC2.36□□□□□ -2.03
FOXA2Q9Y261 MIR3529-201ENST00000637713 78 ntBASIC2.36□□□□□ -2.03
FOXA2Q9Y261 CFHR4-204ENST00000608469 1601 ntTSL 1 (best) BASIC2.35□□□□□ -2.03
FOXA2Q9Y261 SKIL-203ENST00000426052 2757 ntTSL 2 BASIC2.35□□□□□ -2.03
FOXA2Q9Y261 RPL9P7-201ENST00000330965 580 ntBASIC2.35□□□□□ -2.03
FOXA2Q9Y261 OR56A5-201ENST00000340110 738 ntBASIC2.35□□□□□ -2.03
FOXA2Q9Y261 RNU1-35P-201ENST00000362782 153 ntBASIC2.35□□□□□ -2.03
FOXA2Q9Y261 RNU1-140P-201ENST00000365040 165 ntBASIC2.35□□□□□ -2.03
FOXA2Q9Y261 RNU6-282P-201ENST00000365357 103 ntBASIC2.35□□□□□ -2.03
FOXA2Q9Y261 SNORA9.2-201ENST00000365361 133 ntBASIC2.35□□□□□ -2.03
FOXA2Q9Y261 SNORA54-201ENST00000384281 123 ntBASIC2.35□□□□□ -2.03
FOXA2Q9Y261 MIR181B1-201ENST00000385240 110 ntBASIC2.35□□□□□ -2.03
FOXA2Q9Y261 AC104462.1-201ENST00000414565 447 ntTSL 2 BASIC2.35□□□□□ -2.03
FOXA2Q9Y261 AC138623.1-201ENST00000418060 216 ntBASIC2.35□□□□□ -2.03
FOXA2Q9Y261 PGBD4P6-201ENST00000421501 610 ntBASIC2.35□□□□□ -2.03
FOXA2Q9Y261 LINC00368-201ENST00000422994 650 ntTSL 1 (best) BASIC2.35□□□□□ -2.03
FOXA2Q9Y261 RPS3AP44-201ENST00000425466 790 ntBASIC2.35□□□□□ -2.03
FOXA2Q9Y261 AC236972.1-201ENST00000433225 199 ntBASIC2.35□□□□□ -2.03
FOXA2Q9Y261 RPL23AP83-201ENST00000434984 473 ntBASIC2.35□□□□□ -2.03
FOXA2Q9Y261 RPS29P6-201ENST00000438196 145 ntBASIC2.35□□□□□ -2.03
FOXA2Q9Y261 USP9YP29-201ENST00000445112 563 ntBASIC2.35□□□□□ -2.03
FOXA2Q9Y261 AP000936.2-201ENST00000447151 681 ntBASIC2.35□□□□□ -2.03
FOXA2Q9Y261 AL360271.2-201ENST00000447710 161 ntBASIC2.35□□□□□ -2.03
FOXA2Q9Y261 AC006026.2-201ENST00000457376 180 ntBASIC2.35□□□□□ -2.03
FOXA2Q9Y261 AC046136.1-201ENST00000459855 533 ntTSL 3 BASIC2.35□□□□□ -2.03
FOXA2Q9Y261 KLF3P2-201ENST00000465138 268 ntBASIC2.35□□□□□ -2.03
Retrieved 100 of 98,524 protein–RNA pairs in 163.7 ms