Protein–RNA interactions for Protein: Q9UK41

VPS28, Vacuolar protein sorting-associated protein 28 homolog, humanhuman

Predictions only

Length 221 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28Q9UK41 uc_338.14-201ENST00000613162 166 ntBASIC2.97□□□□□ -1.93
VPS28Q9UK41 GPR171-203ENST00000617554 960 ntAPPRIS P1 BASIC2.97□□□□□ -1.93
VPS28Q9UK41 AC009509.4-201ENST00000619202 509 ntBASIC2.97□□□□□ -1.93
VPS28Q9UK41 AC068631.1-221ENST00000626006 592 ntTSL 5 BASIC2.97□□□□□ -1.93
VPS28Q9UK41 NANOGNB-202ENST00000640040 824 ntAPPRIS ALT2 TSL 5 BASIC2.97□□□□□ -1.93
VPS28Q9UK41 MAPK10-266ENST00000641066 6555 ntBASIC2.97□□□□□ -1.93
VPS28Q9UK41 PARPBP-203ENST00000392911 1916 ntTSL 5 BASIC2.97□□□□□ -1.93
VPS28Q9UK41 EFR3A-202ENST00000519656 5247 ntTSL 1 (best) BASIC2.96□□□□□ -1.94
VPS28Q9UK41 IL33-202ENST00000417746 2327 ntTSL 2 BASIC2.96□□□□□ -1.94
VPS28Q9UK41 RPL21P75-201ENST00000396599 483 ntBASIC2.96□□□□□ -1.94
VPS28Q9UK41 MIR887-201ENST00000401258 79 ntBASIC2.96□□□□□ -1.94
VPS28Q9UK41 RPL21P28-201ENST00000401418 483 ntBASIC2.96□□□□□ -1.94
VPS28Q9UK41 AL592114.1-201ENST00000403842 483 ntBASIC2.96□□□□□ -1.94
VPS28Q9UK41 AL590004.2-201ENST00000404787 371 ntBASIC2.96□□□□□ -1.94
VPS28Q9UK41 RNU2-25P-201ENST00000411041 191 ntBASIC2.96□□□□□ -1.94
VPS28Q9UK41 RNA5SP492-201ENST00000411330 114 ntBASIC2.96□□□□□ -1.94
VPS28Q9UK41 EEF1A1P40-201ENST00000412883 573 ntBASIC2.96□□□□□ -1.94
VPS28Q9UK41 OR6C66P-201ENST00000414917 930 ntBASIC2.96□□□□□ -1.94
VPS28Q9UK41 AL356134.1-201ENST00000419815 373 ntTSL 3 BASIC2.96□□□□□ -1.94
VPS28Q9UK41 AL365338.1-201ENST00000422282 858 ntBASIC2.96□□□□□ -1.94
VPS28Q9UK41 LINC00368-201ENST00000422994 650 ntTSL 1 (best) BASIC2.96□□□□□ -1.94
VPS28Q9UK41 AL353612.1-201ENST00000428769 465 ntTSL 3 BASIC2.96□□□□□ -1.94
VPS28Q9UK41 AL627311.1-201ENST00000431514 115 ntBASIC2.96□□□□□ -1.94
VPS28Q9UK41 AC005019.2-201ENST00000434321 359 ntTSL 5 BASIC2.96□□□□□ -1.94
VPS28Q9UK41 AC132479.1-201ENST00000449160 144 ntBASIC2.96□□□□□ -1.94
VPS28Q9UK41 OFD1P4Y-201ENST00000455273 1179 ntBASIC2.96□□□□□ -1.94
VPS28Q9UK41 AC046136.1-201ENST00000459855 533 ntTSL 3 BASIC2.96□□□□□ -1.94
VPS28Q9UK41 RPL21P39-201ENST00000463605 483 ntBASIC2.96□□□□□ -1.94
VPS28Q9UK41 RPL21P93-201ENST00000480465 489 ntBASIC2.96□□□□□ -1.94
VPS28Q9UK41 AC087190.1-201ENST00000484462 480 ntBASIC2.96□□□□□ -1.94
VPS28Q9UK41 AC093591.1-201ENST00000491435 481 ntBASIC2.96□□□□□ -1.94
VPS28Q9UK41 RPL21P16-201ENST00000495531 483 ntBASIC2.96□□□□□ -1.94
VPS28Q9UK41 LINC02101-201ENST00000505861 725 ntTSL 4 BASIC2.96□□□□□ -1.94
VPS28Q9UK41 AC117522.3-201ENST00000507974 584 ntBASIC2.96□□□□□ -1.94
VPS28Q9UK41 AC008716.1-201ENST00000511084 513 ntBASIC2.96□□□□□ -1.94
VPS28Q9UK41 HDAC2-AS2-206ENST00000517965 850 ntTSL 3 BASIC2.96□□□□□ -1.94
VPS28Q9UK41 AC124657.1-201ENST00000527819 429 ntTSL 3 BASIC2.96□□□□□ -1.94
VPS28Q9UK41 LINC02328-203ENST00000557195 682 ntTSL 3 BASIC2.96□□□□□ -1.94
VPS28Q9UK41 MIR5692A1-201ENST00000580523 69 ntBASIC2.96□□□□□ -1.94
VPS28Q9UK41 MIR3611-201ENST00000584484 83 ntBASIC2.96□□□□□ -1.94
VPS28Q9UK41 AC087045.1-201ENST00000605856 382 ntBASIC2.96□□□□□ -1.94
VPS28Q9UK41 MIR7106-201ENST00000612419 65 ntBASIC2.96□□□□□ -1.94
VPS28Q9UK41 ZNF334-205ENST00000615481 3706 ntAPPRIS ALT2 TSL 5 BASIC2.96□□□□□ -1.94
VPS28Q9UK41 MTND5P30-201ENST00000452896 1731 ntBASIC2.96□□□□□ -1.94
VPS28Q9UK41 TPTE2-203ENST00000390680 1558 ntTSL 1 (best) BASIC2.95□□□□□ -1.94
VPS28Q9UK41 LEPR-202ENST00000349533 8227 ntAPPRIS P1 TSL 1 (best) BASIC2.95□□□□□ -1.94
VPS28Q9UK41 ZBED5-201ENST00000413761 2512 ntAPPRIS P1 TSL 1 (best) BASIC2.95□□□□□ -1.94
VPS28Q9UK41 AC093536.2-201ENST00000565257 1406 ntBASIC2.95□□□□□ -1.94
VPS28Q9UK41 KCNIP4-IT1-201ENST00000627566 9848 ntBASIC2.95□□□□□ -1.94
VPS28Q9UK41 HMGN5-201ENST00000358130 2126 ntAPPRIS P2 TSL 2 BASIC2.95□□□□□ -1.94
VPS28Q9UK41 AC096644.4-201ENST00000563417 2912 ntBASIC2.95□□□□□ -1.94
VPS28Q9UK41 SNORD3E-201ENST00000362899 217 ntBASIC2.95□□□□□ -1.94
VPS28Q9UK41 RNU6-1287P-201ENST00000362914 107 ntBASIC2.95□□□□□ -1.94
VPS28Q9UK41 Y_RNA.359-201ENST00000365498 102 ntBASIC2.95□□□□□ -1.94
VPS28Q9UK41 RNU4-48P-201ENST00000365559 182 ntBASIC2.95□□□□□ -1.94
VPS28Q9UK41 RNU6-1060P-201ENST00000384664 107 ntBASIC2.95□□□□□ -1.94
VPS28Q9UK41 RNU6-1179P-201ENST00000384667 107 ntBASIC2.95□□□□□ -1.94
VPS28Q9UK41 MIR578-201ENST00000384828 96 ntBASIC2.95□□□□□ -1.94
VPS28Q9UK41 MDM2-208ENST00000393410 732 ntTSL 1 (best) BASIC2.95□□□□□ -1.94
VPS28Q9UK41 MDM2-210ENST00000393413 657 ntTSL 1 (best) BASIC2.95□□□□□ -1.94
VPS28Q9UK41 AL139039.1-201ENST00000401900 692 ntBASIC2.95□□□□□ -1.94
VPS28Q9UK41 AL355388.1-201ENST00000415726 401 ntTSL 2 BASIC2.95□□□□□ -1.94
VPS28Q9UK41 AL451074.5-201ENST00000415894 435 ntBASIC2.95□□□□□ -1.94
VPS28Q9UK41 AL139397.1-201ENST00000430456 644 ntTSL 2 BASIC2.95□□□□□ -1.94
VPS28Q9UK41 MTCO2P11-201ENST00000431069 680 ntBASIC2.95□□□□□ -1.94
VPS28Q9UK41 AL359636.3-201ENST00000439471 301 ntTSL 2 BASIC2.95□□□□□ -1.94
VPS28Q9UK41 CSN1S2AP-201ENST00000451783 779 ntTSL 1 (best) BASIC2.95□□□□□ -1.94
VPS28Q9UK41 RPL23AP11-201ENST00000475260 469 ntBASIC2.95□□□□□ -1.94
VPS28Q9UK41 AC093534.1-201ENST00000504977 132 ntBASIC2.95□□□□□ -1.94
VPS28Q9UK41 AKIRIN2P1-201ENST00000505898 352 ntBASIC2.95□□□□□ -1.94
VPS28Q9UK41 AC010493.1-201ENST00000513479 292 ntBASIC2.95□□□□□ -1.94
VPS28Q9UK41 RNA5SP503-201ENST00000517047 117 ntBASIC2.95□□□□□ -1.94
VPS28Q9UK41 ACA59.2-201ENST00000517061 156 ntBASIC2.95□□□□□ -1.94
VPS28Q9UK41 AC103957.1-201ENST00000517681 503 ntTSL 3 BASIC2.95□□□□□ -1.94
VPS28Q9UK41 BTF3P12-201ENST00000519620 469 ntBASIC2.95□□□□□ -1.94
VPS28Q9UK41 HSPE1P20-201ENST00000538133 289 ntBASIC2.95□□□□□ -1.94
VPS28Q9UK41 MTCO3P13-201ENST00000577757 781 ntBASIC2.95□□□□□ -1.94
VPS28Q9UK41 MIR4775-201ENST00000581168 75 ntBASIC2.95□□□□□ -1.94
VPS28Q9UK41 MIR3117-201ENST00000584034 78 ntBASIC2.95□□□□□ -1.94
VPS28Q9UK41 LINC02210-208ENST00000585118 546 ntTSL 1 (best) BASIC2.95□□□□□ -1.94
VPS28Q9UK41 AP000787.2-201ENST00000604432 568 ntBASIC2.95□□□□□ -1.94
VPS28Q9UK41 USP12-203ENST00000620323 349 ntTSL 3 BASIC2.95□□□□□ -1.94
VPS28Q9UK41 AC011155.2-201ENST00000623202 216 ntBASIC2.95□□□□□ -1.94
VPS28Q9UK41 LMBRD1-201ENST00000370570 2099 ntTSL 1 (best) BASIC2.95□□□□□ -1.94
VPS28Q9UK41 SEL1L2-201ENST00000284951 2224 ntAPPRIS P1 TSL 5 BASIC2.95□□□□□ -1.94
VPS28Q9UK41 RGS13-204ENST00000543215 1518 ntAPPRIS P1 TSL 1 (best) BASIC2.94□□□□□ -1.94
VPS28Q9UK41 NXPE1-204ENST00000536271 2289 ntTSL 1 (best) BASIC2.94□□□□□ -1.94
VPS28Q9UK41 USP45-208ENST00000500704 5826 ntAPPRIS P1 TSL 5 BASIC2.94□□□□□ -1.94
VPS28Q9UK41 DLEU2_6.3-201ENST00000340052 136 ntBASIC2.94□□□□□ -1.94
VPS28Q9UK41 SNORD14B-201ENST00000364533 90 ntBASIC2.94□□□□□ -1.94
VPS28Q9UK41 RNU1-100P-201ENST00000365255 165 ntBASIC2.94□□□□□ -1.94
VPS28Q9UK41 RNU6-116P-201ENST00000384042 109 ntBASIC2.94□□□□□ -1.94
VPS28Q9UK41 MIR34A-201ENST00000385130 110 ntBASIC2.94□□□□□ -1.94
VPS28Q9UK41 RNU6-1328P-201ENST00000410938 106 ntBASIC2.94□□□□□ -1.94
VPS28Q9UK41 ATP13A5-AS1-201ENST00000414634 476 ntTSL 3 BASIC2.94□□□□□ -1.94
VPS28Q9UK41 AL138962.1-201ENST00000417987 411 ntTSL 5 BASIC2.94□□□□□ -1.94
VPS28Q9UK41 AL157937.1-201ENST00000435092 443 ntTSL 3 BASIC2.94□□□□□ -1.94
VPS28Q9UK41 AL445687.1-201ENST00000439946 251 ntBASIC2.94□□□□□ -1.94
VPS28Q9UK41 AL135938.1-201ENST00000443141 297 ntBASIC2.94□□□□□ -1.94
VPS28Q9UK41 AL078581.2-201ENST00000446392 378 ntTSL 3 BASIC2.94□□□□□ -1.94
Retrieved 100 of 98,524 protein–RNA pairs in 142.9 ms