Protein–RNA interactions for Protein: Q9NPC8

SIX2, Homeobox protein SIX2, humanhuman

Predictions only

Length 291 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SIX2Q9NPC8 HMGB1P27-201ENST00000431429 603 ntBASIC2.82□□□□□ -1.96
SIX2Q9NPC8 HMGB1P12-201ENST00000438594 598 ntBASIC2.82□□□□□ -1.96
SIX2Q9NPC8 AC004691.1-201ENST00000440376 547 ntTSL 3 BASIC2.82□□□□□ -1.96
SIX2Q9NPC8 LINC00571-203ENST00000454060 525 ntTSL 3 BASIC2.82□□□□□ -1.96
SIX2Q9NPC8 AL445465.2-201ENST00000455530 461 ntTSL 2 BASIC2.82□□□□□ -1.96
SIX2Q9NPC8 LINC01038-201ENST00000457858 428 ntTSL 3 BASIC2.82□□□□□ -1.96
SIX2Q9NPC8 RNU6-953P-201ENST00000459154 107 ntBASIC2.82□□□□□ -1.96
SIX2Q9NPC8 AC145146.2-202ENST00000508118 326 ntTSL 3 BASIC2.82□□□□□ -1.96
SIX2Q9NPC8 NAF1-205ENST00000509434 385 ntTSL 3 BASIC2.82□□□□□ -1.96
SIX2Q9NPC8 TTC39CP1-201ENST00000512513 755 ntBASIC2.82□□□□□ -1.96
SIX2Q9NPC8 Y_RNA.689-201ENST00000516589 107 ntBASIC2.82□□□□□ -1.96
SIX2Q9NPC8 SNORD60.2-201ENST00000516883 86 ntBASIC2.82□□□□□ -1.96
SIX2Q9NPC8 SUB1P1-201ENST00000524415 382 ntBASIC2.82□□□□□ -1.96
SIX2Q9NPC8 RANP3-201ENST00000530970 276 ntBASIC2.82□□□□□ -1.96
SIX2Q9NPC8 AC118273.2-201ENST00000532092 465 ntBASIC2.82□□□□□ -1.96
SIX2Q9NPC8 G2E3-AS1-202ENST00000550118 609 ntTSL 5 BASIC2.82□□□□□ -1.96
SIX2Q9NPC8 HIF1AP1-201ENST00000553642 175 ntBASIC2.82□□□□□ -1.96
SIX2Q9NPC8 AL138976.2-201ENST00000563989 694 ntBASIC2.82□□□□□ -1.96
SIX2Q9NPC8 AC060780.3-201ENST00000589464 80 ntBASIC2.82□□□□□ -1.96
SIX2Q9NPC8 AL035413.2-201ENST00000604801 525 ntBASIC2.82□□□□□ -1.96
SIX2Q9NPC8 AC008945.2-201ENST00000606056 604 ntBASIC2.82□□□□□ -1.96
SIX2Q9NPC8 AC010722.1-201ENST00000622595 582 ntTSL 5 BASIC2.82□□□□□ -1.96
SIX2Q9NPC8 APC-201ENST00000257430 10701 ntAPPRIS P1 TSL 5 BASIC2.82□□□□□ -1.96
SIX2Q9NPC8 PKIB-201ENST00000258014 1595 ntTSL 2 BASIC2.82□□□□□ -1.96
SIX2Q9NPC8 BMP5-201ENST00000370830 3952 ntAPPRIS P1 TSL 1 (best) BASIC2.82□□□□□ -1.96
SIX2Q9NPC8 LCOR-205ENST00000421806 16004 ntTSL 3 BASIC2.82□□□□□ -1.96
SIX2Q9NPC8 FTX-214ENST00000638437 12267 ntTSL 5 BASIC2.81□□□□□ -1.96
SIX2Q9NPC8 ZNF680-202ENST00000447137 2159 ntTSL 2 BASIC2.81□□□□□ -1.96
SIX2Q9NPC8 DMD-203ENST00000357033 13956 ntAPPRIS P3 TSL 1 (best) BASIC2.81□□□□□ -1.96
SIX2Q9NPC8 RNU6-1287P-201ENST00000362914 107 ntBASIC2.81□□□□□ -1.96
SIX2Q9NPC8 RNY3P14-201ENST00000384309 102 ntBASIC2.81□□□□□ -1.96
SIX2Q9NPC8 RNU6-1060P-201ENST00000384664 107 ntBASIC2.81□□□□□ -1.96
SIX2Q9NPC8 RNU6-550P-201ENST00000391057 101 ntBASIC2.81□□□□□ -1.96
SIX2Q9NPC8 RPS12P24-201ENST00000412619 387 ntBASIC2.81□□□□□ -1.96
SIX2Q9NPC8 USP9YP20-201ENST00000419224 558 ntBASIC2.81□□□□□ -1.96
SIX2Q9NPC8 AL139413.1-201ENST00000421309 217 ntBASIC2.81□□□□□ -1.96
SIX2Q9NPC8 TRAPPC2P4-201ENST00000421750 331 ntBASIC2.81□□□□□ -1.96
SIX2Q9NPC8 RPL7P46-201ENST00000425129 740 ntBASIC2.81□□□□□ -1.96
SIX2Q9NPC8 CALM2P2-201ENST00000428512 440 ntBASIC2.81□□□□□ -1.96
SIX2Q9NPC8 AL591212.2-201ENST00000433923 257 ntBASIC2.81□□□□□ -1.96
SIX2Q9NPC8 TAAR7P-201ENST00000436141 242 ntBASIC2.81□□□□□ -1.96
SIX2Q9NPC8 AL353572.1-201ENST00000442490 417 ntBASIC2.81□□□□□ -1.96
SIX2Q9NPC8 EIF4EP3-201ENST00000498782 656 ntBASIC2.81□□□□□ -1.96
SIX2Q9NPC8 AC074344.1-201ENST00000512823 224 ntBASIC2.81□□□□□ -1.96
SIX2Q9NPC8 AC106744.2-202ENST00000515123 448 ntTSL 3 BASIC2.81□□□□□ -1.96
SIX2Q9NPC8 RNA5SP471-201ENST00000516971 106 ntBASIC2.81□□□□□ -1.96
SIX2Q9NPC8 AC021736.1-201ENST00000521143 563 ntTSL 4 BASIC2.81□□□□□ -1.96
SIX2Q9NPC8 ADI1P3-201ENST00000549509 470 ntBASIC2.81□□□□□ -1.96
SIX2Q9NPC8 LINC02301-203ENST00000555798 789 ntTSL 3 BASIC2.81□□□□□ -1.96
SIX2Q9NPC8 FOPNL-205ENST00000573429 646 ntTSL 3 BASIC2.81□□□□□ -1.96
SIX2Q9NPC8 AC138761.3-201ENST00000579993 334 ntBASIC2.81□□□□□ -1.96
SIX2Q9NPC8 MIR548S-201ENST00000581352 82 ntBASIC2.81□□□□□ -1.96
SIX2Q9NPC8 ATP1B3P1-201ENST00000605365 821 ntBASIC2.81□□□□□ -1.96
SIX2Q9NPC8 AC022893.3-201ENST00000607665 437 ntBASIC2.81□□□□□ -1.96
SIX2Q9NPC8 AL359547.2-201ENST00000615810 418 ntBASIC2.81□□□□□ -1.96
SIX2Q9NPC8 DUXAP9-208ENST00000622815 614 ntBASIC2.81□□□□□ -1.96
SIX2Q9NPC8 AC048347.1-201ENST00000624621 427 ntBASIC2.81□□□□□ -1.96
SIX2Q9NPC8 TPTE2P4-201ENST00000258589 1605 ntBASIC2.81□□□□□ -1.96
SIX2Q9NPC8 TSGA10-205ENST00000410001 3036 ntAPPRIS P2 TSL 1 (best) BASIC2.8□□□□□ -1.96
SIX2Q9NPC8 AF127577.6-201ENST00000623352 2191 ntBASIC2.8□□□□□ -1.96
SIX2Q9NPC8 AC005183.1-201ENST00000603687 1979 ntBASIC2.8□□□□□ -1.96
SIX2Q9NPC8 DNAJC2-201ENST00000249270 1846 ntTSL 1 (best) BASIC2.8□□□□□ -1.96
SIX2Q9NPC8 RICTOR-201ENST00000296782 7505 ntTSL 1 (best) BASIC2.8□□□□□ -1.96
SIX2Q9NPC8 UBE2L2-201ENST00000254302 429 ntBASIC2.8□□□□□ -1.96
SIX2Q9NPC8 CCDC126-203ENST00000410069 890 ntAPPRIS P1 TSL 1 (best) BASIC2.8□□□□□ -1.96
SIX2Q9NPC8 RNU4-46P-201ENST00000410818 138 ntBASIC2.8□□□□□ -1.96
SIX2Q9NPC8 RNU6-193P-201ENST00000410977 107 ntBASIC2.8□□□□□ -1.96
SIX2Q9NPC8 AC006150.1-201ENST00000412014 263 ntTSL 5 BASIC2.8□□□□□ -1.96
SIX2Q9NPC8 AC051618.1-201ENST00000414295 207 ntTSL 3 BASIC2.8□□□□□ -1.96
SIX2Q9NPC8 OR6C66P-201ENST00000414917 930 ntBASIC2.8□□□□□ -1.96
SIX2Q9NPC8 AL109947.1-201ENST00000423747 382 ntTSL 2 BASIC2.8□□□□□ -1.96
SIX2Q9NPC8 AL590383.1-201ENST00000428602 75 ntBASIC2.8□□□□□ -1.96
SIX2Q9NPC8 NDUFB4P6-201ENST00000436819 366 ntBASIC2.8□□□□□ -1.96
SIX2Q9NPC8 MTND4P25-201ENST00000441039 533 ntBASIC2.8□□□□□ -1.96
SIX2Q9NPC8 AC018643.1-201ENST00000445459 414 ntTSL 5 BASIC2.8□□□□□ -1.96
SIX2Q9NPC8 RPL39P40-201ENST00000445481 146 ntBASIC2.8□□□□□ -1.96
SIX2Q9NPC8 NHS-AS1-201ENST00000452788 366 ntTSL 3 BASIC2.8□□□□□ -1.96
SIX2Q9NPC8 RNU7-180P-201ENST00000459240 63 ntBASIC2.8□□□□□ -1.96
SIX2Q9NPC8 RPL21P8-201ENST00000465083 535 ntBASIC2.8□□□□□ -1.96
SIX2Q9NPC8 RPL7P5-201ENST00000471472 736 ntBASIC2.8□□□□□ -1.96
SIX2Q9NPC8 RPL38P4-201ENST00000502376 214 ntBASIC2.8□□□□□ -1.96
SIX2Q9NPC8 ENSA-210ENST00000503241 574 ntTSL 3 BASIC2.8□□□□□ -1.96
SIX2Q9NPC8 HMGB3P15-201ENST00000507326 574 ntBASIC2.8□□□□□ -1.96
SIX2Q9NPC8 AC097375.2-201ENST00000510416 579 ntTSL 5 BASIC2.8□□□□□ -1.96
SIX2Q9NPC8 AC087439.1-201ENST00000517920 398 ntTSL 3 BASIC2.8□□□□□ -1.96
SIX2Q9NPC8 AC021242.2-203ENST00000521842 687 ntTSL 3 BASIC2.8□□□□□ -1.96
SIX2Q9NPC8 AC007536.1-201ENST00000533382 349 ntBASIC2.8□□□□□ -1.96
SIX2Q9NPC8 MRPL51-203ENST00000538814 501 ntTSL 2 BASIC2.8□□□□□ -1.96
SIX2Q9NPC8 AC243972.3-201ENST00000539655 198 ntBASIC2.8□□□□□ -1.96
SIX2Q9NPC8 LINC02350-201ENST00000544419 480 ntTSL 3 BASIC2.8□□□□□ -1.96
SIX2Q9NPC8 AC022809.1-201ENST00000579247 428 ntTSL 3 BASIC2.8□□□□□ -1.96
SIX2Q9NPC8 AC233702.6-201ENST00000584594 396 ntTSL 3 BASIC2.8□□□□□ -1.96
SIX2Q9NPC8 AL158032.1-201ENST00000605401 106 ntBASIC2.8□□□□□ -1.96
SIX2Q9NPC8 LINC00310-205ENST00000609062 863 ntTSL 5 BASIC2.8□□□□□ -1.96
SIX2Q9NPC8 AL110115.1-201ENST00000614396 364 ntBASIC2.8□□□□□ -1.96
SIX2Q9NPC8 KCNQ1OT1_3.1-201ENST00000616504 116 ntBASIC2.8□□□□□ -1.96
SIX2Q9NPC8 CYLC1-202ENST00000621735 379 ntAPPRIS ALT2 TSL 3 BASIC2.8□□□□□ -1.96
SIX2Q9NPC8 MUC15-201ENST00000281268 2968 ntTSL 5 BASIC2.8□□□□□ -1.96
SIX2Q9NPC8 CCDC30-212ENST00000507855 2445 ntAPPRIS ALT2 TSL 1 (best) BASIC2.79□□□□□ -1.96
SIX2Q9NPC8 SEMA3D-201ENST00000284136 6265 ntAPPRIS P1 TSL 5 BASIC2.79□□□□□ -1.96
Retrieved 100 of 98,524 protein–RNA pairs in 132.7 ms