Protein–RNA interactions for Protein: Q9H1J1

UPF3A, Regulator of nonsense transcripts 3A, humanhuman

Known RBP Predictions only

Length 476 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3AQ9H1J1 AC010631.1-201ENST00000474150 156 ntBASIC2.8□□□□□ -1.96
UPF3AQ9H1J1 AC022272.1-201ENST00000503478 777 ntTSL 2 BASIC2.8□□□□□ -1.96
UPF3AQ9H1J1 LINC02103-201ENST00000512849 523 ntTSL 5 BASIC2.8□□□□□ -1.96
UPF3AQ9H1J1 AC109466.1-211ENST00000519327 496 ntTSL 3 BASIC2.8□□□□□ -1.96
UPF3AQ9H1J1 AC021736.1-201ENST00000521143 563 ntTSL 4 BASIC2.8□□□□□ -1.96
UPF3AQ9H1J1 OR5AQ1P-201ENST00000527596 927 ntBASIC2.8□□□□□ -1.96
UPF3AQ9H1J1 AC008083.1-201ENST00000547748 663 ntTSL 2 BASIC2.8□□□□□ -1.96
UPF3AQ9H1J1 AC128657.1-201ENST00000549459 145 ntBASIC2.8□□□□□ -1.96
UPF3AQ9H1J1 AL352955.1-201ENST00000555490 332 ntTSL 3 BASIC2.8□□□□□ -1.96
UPF3AQ9H1J1 AC092325.1-201ENST00000566449 554 ntBASIC2.8□□□□□ -1.96
UPF3AQ9H1J1 FAM60BP-201ENST00000578364 658 ntBASIC2.8□□□□□ -1.96
UPF3AQ9H1J1 MIR4648-201ENST00000580107 72 ntBASIC2.8□□□□□ -1.96
UPF3AQ9H1J1 MIR4801-201ENST00000582704 82 ntBASIC2.8□□□□□ -1.96
UPF3AQ9H1J1 AL158827.2-201ENST00000602494 330 ntBASIC2.8□□□□□ -1.96
UPF3AQ9H1J1 AC098826.3-201ENST00000603823 466 ntBASIC2.8□□□□□ -1.96
UPF3AQ9H1J1 AP001330.5-201ENST00000607176 411 ntBASIC2.8□□□□□ -1.96
UPF3AQ9H1J1 AC073534.2-201ENST00000620377 381 ntBASIC2.8□□□□□ -1.96
UPF3AQ9H1J1 AC009161.2-201ENST00000624626 138 ntBASIC2.8□□□□□ -1.96
UPF3AQ9H1J1 AL691447.3-201ENST00000635020 330 ntBASIC2.8□□□□□ -1.96
UPF3AQ9H1J1 MIR3688-2-201ENST00000636963 87 ntBASIC2.8□□□□□ -1.96
UPF3AQ9H1J1 FTX-214ENST00000638437 12267 ntTSL 5 BASIC2.8□□□□□ -1.96
UPF3AQ9H1J1 AC016717.2-201ENST00000609089 5141 ntBASIC2.8□□□□□ -1.96
UPF3AQ9H1J1 QSER1-204ENST00000527788 5052 ntTSL 2 BASIC2.8□□□□□ -1.96
UPF3AQ9H1J1 CCDC66-201ENST00000326595 3027 ntAPPRIS P3 TSL 1 (best) BASIC2.79□□□□□ -1.96
UPF3AQ9H1J1 RNU6-188P-201ENST00000364207 107 ntBASIC2.79□□□□□ -1.96
UPF3AQ9H1J1 RNU4-12P-201ENST00000365233 139 ntBASIC2.79□□□□□ -1.96
UPF3AQ9H1J1 Y_RNA.367-201ENST00000365544 101 ntBASIC2.79□□□□□ -1.96
UPF3AQ9H1J1 RNU5E-6P-201ENST00000365574 115 ntBASIC2.79□□□□□ -1.96
UPF3AQ9H1J1 TRAV40-201ENST00000390467 317 ntAPPRIS P1 BASIC2.79□□□□□ -1.96
UPF3AQ9H1J1 CIR1P3-201ENST00000405137 479 ntBASIC2.79□□□□□ -1.96
UPF3AQ9H1J1 AL590002.1-201ENST00000406554 418 ntBASIC2.79□□□□□ -1.96
UPF3AQ9H1J1 RNU2-62P-201ENST00000410868 191 ntBASIC2.79□□□□□ -1.96
UPF3AQ9H1J1 MTCO3P12-201ENST00000416718 547 ntBASIC2.79□□□□□ -1.96
UPF3AQ9H1J1 MTATP6P18-201ENST00000417994 673 ntBASIC2.79□□□□□ -1.96
UPF3AQ9H1J1 MTCYBP5-201ENST00000423752 1135 ntBASIC2.79□□□□□ -1.96
UPF3AQ9H1J1 BX276092.3-201ENST00000424182 230 ntBASIC2.79□□□□□ -1.96
UPF3AQ9H1J1 AL589986.2-201ENST00000429352 397 ntTSL 2 BASIC2.79□□□□□ -1.96
UPF3AQ9H1J1 MRPS10P2-201ENST00000431226 381 ntBASIC2.79□□□□□ -1.96
UPF3AQ9H1J1 GPR143P-201ENST00000434155 205 ntBASIC2.79□□□□□ -1.96
UPF3AQ9H1J1 AL596276.1-201ENST00000434465 418 ntBASIC2.79□□□□□ -1.96
UPF3AQ9H1J1 MTATP6P16-201ENST00000434543 526 ntBASIC2.79□□□□□ -1.96
UPF3AQ9H1J1 AL139289.1-201ENST00000436713 731 ntTSL 3 BASIC2.79□□□□□ -1.96
UPF3AQ9H1J1 AC099566.1-201ENST00000442558 479 ntTSL 3 BASIC2.79□□□□□ -1.96
UPF3AQ9H1J1 HIGD1AP2-201ENST00000446367 280 ntBASIC2.79□□□□□ -1.96
UPF3AQ9H1J1 AC104688.1-201ENST00000447158 419 ntTSL 3 BASIC2.79□□□□□ -1.96
UPF3AQ9H1J1 AC007557.1-201ENST00000451711 541 ntTSL 2 BASIC2.79□□□□□ -1.96
UPF3AQ9H1J1 MTND2P24-201ENST00000453434 806 ntBASIC2.79□□□□□ -1.96
UPF3AQ9H1J1 RNU6-420P-201ENST00000458780 107 ntBASIC2.79□□□□□ -1.96
UPF3AQ9H1J1 RN7SL297P-201ENST00000483161 293 ntBASIC2.79□□□□□ -1.96
UPF3AQ9H1J1 AC023194.1-201ENST00000493084 308 ntBASIC2.79□□□□□ -1.96
UPF3AQ9H1J1 ANKRD36B-207ENST00000497329 649 ntTSL 1 (best) BASIC2.79□□□□□ -1.96
UPF3AQ9H1J1 LINC02447-203ENST00000504402 292 ntTSL 3 BASIC2.79□□□□□ -1.96
UPF3AQ9H1J1 FAM92A1P2-202ENST00000504766 877 ntBASIC2.79□□□□□ -1.96
UPF3AQ9H1J1 AC234781.5-201ENST00000508429 271 ntBASIC2.79□□□□□ -1.96
UPF3AQ9H1J1 ZNF706-202ENST00000517844 604 ntAPPRIS P1 TSL 3 BASIC2.79□□□□□ -1.96
UPF3AQ9H1J1 AP003469.3-201ENST00000518090 473 ntTSL 3 BASIC2.79□□□□□ -1.96
UPF3AQ9H1J1 HMGB1P41-201ENST00000520234 440 ntBASIC2.79□□□□□ -1.96
UPF3AQ9H1J1 HMGB1P33-201ENST00000563485 527 ntBASIC2.79□□□□□ -1.96
UPF3AQ9H1J1 MIR4524B-201ENST00000581569 115 ntBASIC2.79□□□□□ -1.96
UPF3AQ9H1J1 AC113137.1-201ENST00000591869 558 ntTSL 4 BASIC2.79□□□□□ -1.96
UPF3AQ9H1J1 Z84480.1-201ENST00000605131 311 ntBASIC2.79□□□□□ -1.96
UPF3AQ9H1J1 BNIP3P10-201ENST00000605360 577 ntBASIC2.79□□□□□ -1.96
UPF3AQ9H1J1 AC012443.1-201ENST00000605605 231 ntBASIC2.79□□□□□ -1.96
UPF3AQ9H1J1 AP002360.4-201ENST00000606980 481 ntBASIC2.79□□□□□ -1.96
UPF3AQ9H1J1 AL359198.2-201ENST00000611836 194 ntBASIC2.79□□□□□ -1.96
UPF3AQ9H1J1 LINC01515-217ENST00000620859 694 ntTSL 5 BASIC2.79□□□□□ -1.96
UPF3AQ9H1J1 AL360181.4-201ENST00000621752 134 ntBASIC2.79□□□□□ -1.96
UPF3AQ9H1J1 AC139792.3-201ENST00000623525 224 ntBASIC2.79□□□□□ -1.96
UPF3AQ9H1J1 DDX10P1-201ENST00000448545 1933 ntBASIC2.79□□□□□ -1.96
UPF3AQ9H1J1 AL050331.3-201ENST00000448740 2081 ntTSL 2 BASIC2.78□□□□□ -1.96
UPF3AQ9H1J1 N4BP2L2-211ENST00000504114 2513 ntTSL 5 BASIC2.78□□□□□ -1.96
UPF3AQ9H1J1 NT5C3A-202ENST00000381626 1909 ntAPPRIS ALT1 TSL 5 BASIC2.78□□□□□ -1.96
UPF3AQ9H1J1 OGN-201ENST00000262551 2971 ntAPPRIS P1 TSL 5 BASIC2.78□□□□□ -1.96
UPF3AQ9H1J1 HSPE1P11-201ENST00000339579 310 ntBASIC2.78□□□□□ -1.96
UPF3AQ9H1J1 SNORD56.5-201ENST00000364281 72 ntBASIC2.78□□□□□ -1.96
UPF3AQ9H1J1 RNU6-483P-201ENST00000384088 108 ntBASIC2.78□□□□□ -1.96
UPF3AQ9H1J1 RNU6-278P-201ENST00000390945 109 ntBASIC2.78□□□□□ -1.96
UPF3AQ9H1J1 RNU6-1158P-201ENST00000391167 107 ntBASIC2.78□□□□□ -1.96
UPF3AQ9H1J1 BTF3P7-201ENST00000407097 488 ntBASIC2.78□□□□□ -1.96
UPF3AQ9H1J1 RNU2-9P-201ENST00000410194 145 ntBASIC2.78□□□□□ -1.96
UPF3AQ9H1J1 AC080125.1-201ENST00000414888 684 ntBASIC2.78□□□□□ -1.96
UPF3AQ9H1J1 LINC01707-201ENST00000425517 627 ntTSL 3 BASIC2.78□□□□□ -1.96
UPF3AQ9H1J1 AC064852.1-201ENST00000427571 851 ntTSL 3 BASIC2.78□□□□□ -1.96
UPF3AQ9H1J1 AP001117.1-201ENST00000428205 609 ntTSL 2 BASIC2.78□□□□□ -1.96
UPF3AQ9H1J1 AC244035.3-201ENST00000428399 271 ntTSL 2 BASIC2.78□□□□□ -1.96
UPF3AQ9H1J1 UBBP3-201ENST00000445497 241 ntBASIC2.78□□□□□ -1.96
UPF3AQ9H1J1 Z96811.1-201ENST00000445880 108 ntBASIC2.78□□□□□ -1.96
UPF3AQ9H1J1 SFTA1P-203ENST00000446372 693 ntTSL 1 (best) BASIC2.78□□□□□ -1.96
UPF3AQ9H1J1 AC004888.1-201ENST00000450480 547 ntTSL 2 BASIC2.78□□□□□ -1.96
UPF3AQ9H1J1 AC069549.1-201ENST00000451584 499 ntTSL 3 BASIC2.78□□□□□ -1.96
UPF3AQ9H1J1 CACYBPP2-201ENST00000453625 678 ntBASIC2.78□□□□□ -1.96
UPF3AQ9H1J1 MTCO3P38-201ENST00000468910 766 ntBASIC2.78□□□□□ -1.96
UPF3AQ9H1J1 C1orf112-206ENST00000472795 925 ntAPPRIS ALT2 TSL 2 BASIC2.78□□□□□ -1.96
UPF3AQ9H1J1 AC105914.1-201ENST00000511798 226 ntBASIC2.78□□□□□ -1.96
UPF3AQ9H1J1 SNORD27.1-201ENST00000516319 72 ntBASIC2.78□□□□□ -1.96
UPF3AQ9H1J1 Y_RNA.693-201ENST00000516641 110 ntBASIC2.78□□□□□ -1.96
UPF3AQ9H1J1 AC104383.1-201ENST00000530297 370 ntBASIC2.78□□□□□ -1.96
UPF3AQ9H1J1 SNRPGP16-201ENST00000533275 226 ntBASIC2.78□□□□□ -1.96
UPF3AQ9H1J1 AC009145.3-201ENST00000567386 476 ntTSL 3 BASIC2.78□□□□□ -1.96
UPF3AQ9H1J1 LIVAR-201ENST00000578633 384 ntTSL 3 BASIC2.78□□□□□ -1.96
Retrieved 100 of 98,524 protein–RNA pairs in 113.3 ms