Protein–RNA interactions for Protein: Q96RU2

USP28, Ubiquitin carboxyl-terminal hydrolase 28, humanhuman

Predictions only

Length 1,077 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP28Q96RU2 AL365295.1-201ENST00000454942 514 ntTSL 5 BASIC2.8□□□□□ -1.96
USP28Q96RU2 AC092422.1-201ENST00000455576 584 ntTSL 4 BASIC2.8□□□□□ -1.96
USP28Q96RU2 RNU6-420P-201ENST00000458780 107 ntBASIC2.8□□□□□ -1.96
USP28Q96RU2 snoU13.28-201ENST00000459235 104 ntBASIC2.8□□□□□ -1.96
USP28Q96RU2 AC010493.1-201ENST00000513479 292 ntBASIC2.8□□□□□ -1.96
USP28Q96RU2 RNU7-51P-201ENST00000516560 62 ntBASIC2.8□□□□□ -1.96
USP28Q96RU2 LINC00824-201ENST00000517583 805 ntTSL 5 BASIC2.8□□□□□ -1.96
USP28Q96RU2 AP003469.3-201ENST00000518090 473 ntTSL 3 BASIC2.8□□□□□ -1.96
USP28Q96RU2 AC022679.1-202ENST00000520251 376 ntTSL 3 BASIC2.8□□□□□ -1.96
USP28Q96RU2 AC090124.2-201ENST00000527727 563 ntTSL 4 BASIC2.8□□□□□ -1.96
USP28Q96RU2 AP003072.2-201ENST00000527756 676 ntBASIC2.8□□□□□ -1.96
USP28Q96RU2 AC008083.1-201ENST00000547748 663 ntTSL 2 BASIC2.8□□□□□ -1.96
USP28Q96RU2 CR383656.11-201ENST00000552261 498 ntTSL 3 BASIC2.8□□□□□ -1.96
USP28Q96RU2 EIF4BP1-201ENST00000554881 351 ntBASIC2.8□□□□□ -1.96
USP28Q96RU2 AC009145.3-201ENST00000567386 476 ntTSL 3 BASIC2.8□□□□□ -1.96
USP28Q96RU2 MIR4319-201ENST00000577285 85 ntBASIC2.8□□□□□ -1.96
USP28Q96RU2 AC087749.2-201ENST00000583910 352 ntTSL 5 BASIC2.8□□□□□ -1.96
USP28Q96RU2 AL645944.1-201ENST00000603857 493 ntBASIC2.8□□□□□ -1.96
USP28Q96RU2 AC009161.2-201ENST00000624626 138 ntBASIC2.8□□□□□ -1.96
USP28Q96RU2 ZNF680P1-201ENST00000436625 1469 ntBASIC2.79□□□□□ -1.96
USP28Q96RU2 AC062016.1-201ENST00000355719 319 ntBASIC2.79□□□□□ -1.96
USP28Q96RU2 RNU6-1284P-201ENST00000363701 100 ntBASIC2.79□□□□□ -1.96
USP28Q96RU2 SNORA80A-201ENST00000363922 136 ntBASIC2.79□□□□□ -1.96
USP28Q96RU2 Y_RNA.256-201ENST00000364594 104 ntBASIC2.79□□□□□ -1.96
USP28Q96RU2 MIR181A1-201ENST00000385026 110 ntBASIC2.79□□□□□ -1.96
USP28Q96RU2 RPS4XP8-201ENST00000402039 771 ntBASIC2.79□□□□□ -1.96
USP28Q96RU2 AL591416.1-201ENST00000404015 867 ntBASIC2.79□□□□□ -1.96
USP28Q96RU2 AL139397.2-201ENST00000404529 772 ntBASIC2.79□□□□□ -1.96
USP28Q96RU2 NDUFS5P1-201ENST00000405668 289 ntBASIC2.79□□□□□ -1.96
USP28Q96RU2 RNU6ATAC25P-201ENST00000408798 117 ntBASIC2.79□□□□□ -1.96
USP28Q96RU2 AC003985.1-201ENST00000414127 362 ntTSL 3 BASIC2.79□□□□□ -1.96
USP28Q96RU2 AL353612.1-201ENST00000428769 465 ntTSL 3 BASIC2.79□□□□□ -1.96
USP28Q96RU2 MTND3P21-201ENST00000433774 331 ntBASIC2.79□□□□□ -1.96
USP28Q96RU2 LINC01510-201ENST00000441991 468 ntTSL 3 BASIC2.79□□□□□ -1.96
USP28Q96RU2 AC104688.1-201ENST00000447158 419 ntTSL 3 BASIC2.79□□□□□ -1.96
USP28Q96RU2 FDX1P2-201ENST00000450769 375 ntBASIC2.79□□□□□ -1.96
USP28Q96RU2 AL139260.1-202ENST00000456813 441 ntTSL 3 BASIC2.79□□□□□ -1.96
USP28Q96RU2 C1orf112-206ENST00000472795 925 ntAPPRIS ALT2 TSL 2 BASIC2.79□□□□□ -1.96
USP28Q96RU2 AC092989.1-201ENST00000481235 277 ntBASIC2.79□□□□□ -1.96
USP28Q96RU2 VTRNA2-2P-201ENST00000516091 103 ntBASIC2.79□□□□□ -1.96
USP28Q96RU2 RNU6-1092P-201ENST00000516955 87 ntBASIC2.79□□□□□ -1.96
USP28Q96RU2 RNU6-410P-201ENST00000517006 107 ntBASIC2.79□□□□□ -1.96
USP28Q96RU2 RN7SKP40-201ENST00000517211 242 ntBASIC2.79□□□□□ -1.96
USP28Q96RU2 ZNF706-202ENST00000517844 604 ntAPPRIS P1 TSL 3 BASIC2.79□□□□□ -1.96
USP28Q96RU2 MAL2-206ENST00000522187 547 ntTSL 4 BASIC2.79□□□□□ -1.96
USP28Q96RU2 AC060765.1-201ENST00000522776 544 ntTSL 4 BASIC2.79□□□□□ -1.96
USP28Q96RU2 MS4A4E-204ENST00000526086 460 ntTSL 1 (best) BASIC2.79□□□□□ -1.96
USP28Q96RU2 AC011979.2-201ENST00000527568 352 ntBASIC2.79□□□□□ -1.96
USP28Q96RU2 AP001646.1-201ENST00000527936 915 ntBASIC2.79□□□□□ -1.96
USP28Q96RU2 CLEC2D-214ENST00000543300 399 ntTSL 1 (best) BASIC2.79□□□□□ -1.96
USP28Q96RU2 CLEC2D-216ENST00000545918 288 ntTSL 1 (best) BASIC2.79□□□□□ -1.96
USP28Q96RU2 HMGB1P6-201ENST00000569046 646 ntBASIC2.79□□□□□ -1.96
USP28Q96RU2 AC005909.1-201ENST00000577835 755 ntTSL 3 BASIC2.79□□□□□ -1.96
USP28Q96RU2 AC024619.4-201ENST00000580924 316 ntBASIC2.79□□□□□ -1.96
USP28Q96RU2 AC233702.6-201ENST00000584594 396 ntTSL 3 BASIC2.79□□□□□ -1.96
USP28Q96RU2 AC017083.3-201ENST00000609955 700 ntBASIC2.79□□□□□ -1.96
USP28Q96RU2 SDR42E1P2-201ENST00000614861 481 ntBASIC2.79□□□□□ -1.96
USP28Q96RU2 U6atac.1-201ENST00000616025 117 ntBASIC2.79□□□□□ -1.96
USP28Q96RU2 U4.5-201ENST00000617137 123 ntBASIC2.79□□□□□ -1.96
USP28Q96RU2 HOTTIP_4.1-201ENST00000618195 165 ntBASIC2.79□□□□□ -1.96
USP28Q96RU2 AL589994.2-201ENST00000621124 579 ntBASIC2.79□□□□□ -1.96
USP28Q96RU2 SLCO1B3-201ENST00000261196 2840 ntAPPRIS P1 TSL 1 (best) BASIC2.79□□□□□ -1.96
USP28Q96RU2 RNU1-51P-201ENST00000365345 176 ntBASIC2.78□□□□□ -1.96
USP28Q96RU2 RFPL3S-202ENST00000382086 455 ntAPPRIS ALT2 TSL 2 BASIC2.78□□□□□ -1.96
USP28Q96RU2 RNU6-641P-201ENST00000384006 107 ntBASIC2.78□□□□□ -1.96
USP28Q96RU2 RNU6-14P-201ENST00000384630 106 ntBASIC2.78□□□□□ -1.96
USP28Q96RU2 TRAV40-201ENST00000390467 317 ntAPPRIS P1 BASIC2.78□□□□□ -1.96
USP28Q96RU2 TRDJ1-201ENST00000390473 51 ntAPPRIS P1 BASIC2.78□□□□□ -1.96
USP28Q96RU2 BTF3P7-201ENST00000407097 488 ntBASIC2.78□□□□□ -1.96
USP28Q96RU2 RN7SKP140-201ENST00000411196 284 ntBASIC2.78□□□□□ -1.96
USP28Q96RU2 AC005062.1-206ENST00000424516 710 ntTSL 3 BASIC2.78□□□□□ -1.96
USP28Q96RU2 USP9YP18-201ENST00000425912 695 ntBASIC2.78□□□□□ -1.96
USP28Q96RU2 ELOCP14-201ENST00000428070 331 ntBASIC2.78□□□□□ -1.96
USP28Q96RU2 MED13P1-201ENST00000428342 171 ntBASIC2.78□□□□□ -1.96
USP28Q96RU2 AL139415.2-201ENST00000431968 163 ntBASIC2.78□□□□□ -1.96
USP28Q96RU2 HMGB3P12-201ENST00000438745 556 ntBASIC2.78□□□□□ -1.96
USP28Q96RU2 ELOCP7-201ENST00000439968 331 ntBASIC2.78□□□□□ -1.96
USP28Q96RU2 AC069549.1-201ENST00000451584 499 ntTSL 3 BASIC2.78□□□□□ -1.96
USP28Q96RU2 MTND2P24-201ENST00000453434 806 ntBASIC2.78□□□□□ -1.96
USP28Q96RU2 AC027673.1-201ENST00000456245 405 ntBASIC2.78□□□□□ -1.96
USP28Q96RU2 AL133481.3-201ENST00000456546 333 ntTSL 3 BASIC2.78□□□□□ -1.96
USP28Q96RU2 AC079382.1-201ENST00000493346 557 ntBASIC2.78□□□□□ -1.96
USP28Q96RU2 RPS27P26-201ENST00000494583 239 ntBASIC2.78□□□□□ -1.96
USP28Q96RU2 RNU2-10P-201ENST00000516375 211 ntBASIC2.78□□□□□ -1.96
USP28Q96RU2 IGHVII-62-1-201ENST00000519283 235 ntBASIC2.78□□□□□ -1.96
USP28Q96RU2 AP006587.4-201ENST00000526053 529 ntBASIC2.78□□□□□ -1.96
USP28Q96RU2 OR5B19P-201ENST00000531766 928 ntBASIC2.78□□□□□ -1.96
USP28Q96RU2 AC008083.3-201ENST00000547777 329 ntTSL 3 BASIC2.78□□□□□ -1.96
USP28Q96RU2 AC025575.1-201ENST00000548497 544 ntTSL 4 BASIC2.78□□□□□ -1.96
USP28Q96RU2 LINC02309-201ENST00000553679 207 ntTSL 3 BASIC2.78□□□□□ -1.96
USP28Q96RU2 HMGB1P33-201ENST00000563485 527 ntBASIC2.78□□□□□ -1.96
USP28Q96RU2 AMZ2P1-203ENST00000565833 850 ntBASIC2.78□□□□□ -1.96
USP28Q96RU2 AC068506.1-202ENST00000613388 545 ntTSL 3 BASIC2.78□□□□□ -1.96
USP28Q96RU2 AC007014.2-201ENST00000615581 479 ntBASIC2.78□□□□□ -1.96
USP28Q96RU2 AC090132.2-201ENST00000615881 347 ntBASIC2.78□□□□□ -1.96
USP28Q96RU2 AC073534.2-201ENST00000620377 381 ntBASIC2.78□□□□□ -1.96
USP28Q96RU2 AC092608.2-201ENST00000624427 218 ntBASIC2.78□□□□□ -1.96
USP28Q96RU2 AC068631.1-221ENST00000626006 592 ntTSL 5 BASIC2.78□□□□□ -1.96
USP28Q96RU2 PTP4A2-219ENST00000626355 606 ntTSL 5 BASIC2.78□□□□□ -1.96
USP28Q96RU2 ANKRD26P2-201ENST00000445530 1710 ntBASIC2.78□□□□□ -1.96
Retrieved 100 of 98,524 protein–RNA pairs in 100.4 ms