Protein–RNA interactions for Protein: Q96MF4

CCDC140, Coiled-coil domain-containing protein 140, humanhuman

Predictions only

Length 163 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC140Q96MF4 AC008641.1-201ENST00000523781 248 ntTSL 3 BASIC3.68□□□□□ -1.82
CCDC140Q96MF4 AC026894.1-202ENST00000533843 477 ntTSL 5 BASIC3.68□□□□□ -1.82
CCDC140Q96MF4 AP001880.2-201ENST00000538233 448 ntBASIC3.68□□□□□ -1.82
CCDC140Q96MF4 NKAIN2-205ENST00000546092 148 ntTSL 5 BASIC3.68□□□□□ -1.82
CCDC140Q96MF4 MIR3667-201ENST00000581025 74 ntBASIC3.68□□□□□ -1.82
CCDC140Q96MF4 MIR4436B2-201ENST00000581415 91 ntBASIC3.68□□□□□ -1.82
CCDC140Q96MF4 AC090897.2-201ENST00000581715 130 ntBASIC3.68□□□□□ -1.82
CCDC140Q96MF4 MIR3128-201ENST00000581957 66 ntBASIC3.68□□□□□ -1.82
CCDC140Q96MF4 MIR4436B1-201ENST00000583272 91 ntBASIC3.68□□□□□ -1.82
CCDC140Q96MF4 Y_RNA.772-201ENST00000606692 102 ntBASIC3.68□□□□□ -1.82
CCDC140Q96MF4 C7orf77-201ENST00000616258 548 ntAPPRIS P1 TSL 1 (best) BASIC3.68□□□□□ -1.82
CCDC140Q96MF4 AC006111.3-201ENST00000622137 383 ntBASIC3.68□□□□□ -1.82
CCDC140Q96MF4 PIGN-242ENST00000640145 4505 ntAPPRIS P1 TSL 5 BASIC3.68□□□□□ -1.82
CCDC140Q96MF4 UBR1-201ENST00000290650 7761 ntAPPRIS P1 TSL 1 (best) BASIC3.68□□□□□ -1.82
CCDC140Q96MF4 PTK2-212ENST00000519419 4439 ntTSL 5 BASIC3.68□□□□□ -1.82
CCDC140Q96MF4 TM4SF18-201ENST00000296059 3852 ntAPPRIS P1 TSL 1 (best) BASIC3.68□□□□□ -1.82
CCDC140Q96MF4 WHAMMP2-201ENST00000512149 5482 ntTSL 5 BASIC3.68□□□□□ -1.82
CCDC140Q96MF4 OR6C2-203ENST00000641516 1682 ntAPPRIS P1 BASIC3.68□□□□□ -1.82
CCDC140Q96MF4 SLCO1A2-201ENST00000307378 7682 ntAPPRIS P1 TSL 1 (best) BASIC3.68□□□□□ -1.82
CCDC140Q96MF4 KNTC1-204ENST00000436959 2412 ntTSL 2 BASIC3.68□□□□□ -1.82
CCDC140Q96MF4 HDX-202ENST00000373177 2924 ntAPPRIS P1 TSL 1 (best) BASIC3.67□□□□□ -1.82
CCDC140Q96MF4 PIGN-245ENST00000640252 7924 ntAPPRIS P1 TSL 1 (best) BASIC3.67□□□□□ -1.82
CCDC140Q96MF4 IFI44L-201ENST00000370751 5874 ntAPPRIS P1 TSL 1 (best) BASIC3.67□□□□□ -1.82
CCDC140Q96MF4 HIPK3-204ENST00000525975 3668 ntAPPRIS P1 TSL 1 (best) BASIC3.67□□□□□ -1.82
CCDC140Q96MF4 ADGRL3-202ENST00000504896 4816 ntTSL 5 BASIC3.67□□□□□ -1.82
CCDC140Q96MF4 PANK1-203ENST00000342512 2703 ntAPPRIS P1 TSL 1 (best) BASIC3.67□□□□□ -1.82
CCDC140Q96MF4 TLK1-212ENST00000521943 2605 ntTSL 2 BASIC3.67□□□□□ -1.82
CCDC140Q96MF4 ATP7A-202ENST00000343533 8289 ntTSL 5 BASIC3.67□□□□□ -1.82
CCDC140Q96MF4 N4BP2L2-201ENST00000267068 9427 ntAPPRIS P1 TSL 1 (best) BASIC3.67□□□□□ -1.82
CCDC140Q96MF4 ADGRL3-203ENST00000506700 4838 ntTSL 5 BASIC3.67□□□□□ -1.82
CCDC140Q96MF4 APCS-201ENST00000255040 926 ntAPPRIS P1 TSL 1 (best) BASIC3.67□□□□□ -1.82
CCDC140Q96MF4 RNU6-212P-201ENST00000362642 104 ntBASIC3.67□□□□□ -1.82
CCDC140Q96MF4 RNU6-1159P-201ENST00000362933 107 ntBASIC3.67□□□□□ -1.82
CCDC140Q96MF4 Y_RNA.350-201ENST00000365409 98 ntBASIC3.67□□□□□ -1.82
CCDC140Q96MF4 TMSB10P2-201ENST00000416049 131 ntBASIC3.67□□□□□ -1.82
CCDC140Q96MF4 AC138623.1-201ENST00000418060 216 ntBASIC3.67□□□□□ -1.82
CCDC140Q96MF4 AC006369.1-201ENST00000419425 548 ntTSL 3 BASIC3.67□□□□□ -1.82
CCDC140Q96MF4 AC079790.1-201ENST00000420365 507 ntTSL 3 BASIC3.67□□□□□ -1.82
CCDC140Q96MF4 KCND3-IT1-201ENST00000439736 376 ntTSL 3 BASIC3.67□□□□□ -1.82
CCDC140Q96MF4 AL137076.1-201ENST00000441046 551 ntTSL 2 BASIC3.67□□□□□ -1.82
CCDC140Q96MF4 AC092324.1-201ENST00000468671 324 ntBASIC3.67□□□□□ -1.82
CCDC140Q96MF4 HMGB1P35-201ENST00000503360 598 ntBASIC3.67□□□□□ -1.82
CCDC140Q96MF4 IGKV2-23-201ENST00000518729 323 ntBASIC3.67□□□□□ -1.82
CCDC140Q96MF4 UBL5P4-201ENST00000562584 236 ntBASIC3.67□□□□□ -1.82
CCDC140Q96MF4 MIR5695-201ENST00000579717 85 ntBASIC3.67□□□□□ -1.82
CCDC140Q96MF4 AC091152.3-201ENST00000604227 325 ntBASIC3.67□□□□□ -1.82
CCDC140Q96MF4 STARD13-AS-221ENST00000608197 604 ntTSL 5 BASIC3.67□□□□□ -1.82
CCDC140Q96MF4 AC005296.1-201ENST00000616145 209 ntBASIC3.67□□□□□ -1.82
CCDC140Q96MF4 AC078938.1-201ENST00000620993 318 ntBASIC3.67□□□□□ -1.82
CCDC140Q96MF4 LIMA1-214ENST00000552783 3612 ntAPPRIS ALT2 TSL 1 (best) BASIC3.67□□□□□ -1.82
CCDC140Q96MF4 R3HCC1L-201ENST00000298999 3379 ntAPPRIS P1 TSL 5 BASIC3.67□□□□□ -1.82
CCDC140Q96MF4 AL136164.3-201ENST00000624429 3978 ntBASIC3.67□□□□□ -1.82
CCDC140Q96MF4 PLCL1-203ENST00000437704 5979 ntTSL 1 (best) BASIC3.67□□□□□ -1.82
CCDC140Q96MF4 B3GNT5-201ENST00000326505 4123 ntAPPRIS P1 TSL 1 (best) BASIC3.67□□□□□ -1.82
CCDC140Q96MF4 SASS6-201ENST00000287482 3880 ntAPPRIS P1 TSL 1 (best) BASIC3.67□□□□□ -1.82
CCDC140Q96MF4 IL6ST-205ENST00000381294 2574 ntTSL 1 (best) BASIC3.66□□□□□ -1.82
CCDC140Q96MF4 OR5A1-202ENST00000641045 8612 ntAPPRIS P1 BASIC3.66□□□□□ -1.82
CCDC140Q96MF4 PLCE1-202ENST00000371380 12024 ntAPPRIS P3 TSL 1 (best) BASIC3.66□□□□□ -1.82
CCDC140Q96MF4 SLC26A7-209ENST00000617078 5094 ntTSL 5 BASIC3.66□□□□□ -1.82
CCDC140Q96MF4 C6-201ENST00000263413 3661 ntAPPRIS P1 TSL 1 (best) BASIC3.66□□□□□ -1.82
CCDC140Q96MF4 RNU1-83P-201ENST00000363426 164 ntBASIC3.66□□□□□ -1.82
CCDC140Q96MF4 Y_RNA.319-201ENST00000365138 92 ntBASIC3.66□□□□□ -1.82
CCDC140Q96MF4 RNU6-622P-201ENST00000384272 103 ntBASIC3.66□□□□□ -1.82
CCDC140Q96MF4 SNORD78.2-201ENST00000391076 69 ntBASIC3.66□□□□□ -1.82
CCDC140Q96MF4 RNU6-847P-201ENST00000411115 108 ntBASIC3.66□□□□□ -1.82
CCDC140Q96MF4 AL158837.1-201ENST00000417644 452 ntTSL 2 BASIC3.66□□□□□ -1.82
CCDC140Q96MF4 AL590135.1-201ENST00000422215 156 ntBASIC3.66□□□□□ -1.82
CCDC140Q96MF4 AC019205.3-201ENST00000424573 156 ntBASIC3.66□□□□□ -1.82
CCDC140Q96MF4 PTGES3P4-201ENST00000426243 356 ntBASIC3.66□□□□□ -1.82
CCDC140Q96MF4 EIF1P2-201ENST00000428233 350 ntBASIC3.66□□□□□ -1.82
CCDC140Q96MF4 RPS15AP7-201ENST00000439294 405 ntBASIC3.66□□□□□ -1.82
CCDC140Q96MF4 ZFRP1-201ENST00000457579 2970 ntBASIC3.66□□□□□ -1.82
CCDC140Q96MF4 AL031183.1-201ENST00000457667 207 ntBASIC3.66□□□□□ -1.82
CCDC140Q96MF4 RNU7-23P-201ENST00000459465 62 ntBASIC3.66□□□□□ -1.82
CCDC140Q96MF4 AL591473.1-201ENST00000464297 313 ntBASIC3.66□□□□□ -1.82
CCDC140Q96MF4 AC020593.1-201ENST00000507399 299 ntBASIC3.66□□□□□ -1.82
CCDC140Q96MF4 Y_RNA.713-201ENST00000517013 96 ntBASIC3.66□□□□□ -1.82
CCDC140Q96MF4 LINC00944-201ENST00000536517 421 ntTSL 2 BASIC3.66□□□□□ -1.82
CCDC140Q96MF4 AC105129.1-201ENST00000560250 297 ntBASIC3.66□□□□□ -1.82
CCDC140Q96MF4 AC136932.1-201ENST00000574771 208 ntBASIC3.66□□□□□ -1.82
CCDC140Q96MF4 MIR3934-201ENST00000579806 107 ntBASIC3.66□□□□□ -1.82
CCDC140Q96MF4 MIR4737-201ENST00000583979 81 ntBASIC3.66□□□□□ -1.82
CCDC140Q96MF4 MIR6748-201ENST00000610433 71 ntBASIC3.66□□□□□ -1.82
CCDC140Q96MF4 AL138880.2-201ENST00000616214 239 ntBASIC3.66□□□□□ -1.82
CCDC140Q96MF4 MIR376A1-201ENST00000616574 68 ntBASIC3.66□□□□□ -1.82
CCDC140Q96MF4 DLEU1_1.1-201ENST00000618107 190 ntBASIC3.66□□□□□ -1.82
CCDC140Q96MF4 ERC2-201ENST00000288221 6138 ntAPPRIS P1 TSL 1 (best) BASIC3.66□□□□□ -1.82
CCDC140Q96MF4 ATP13A4-203ENST00000392443 4016 ntTSL 5 BASIC3.66□□□□□ -1.82
CCDC140Q96MF4 LINC01938-201ENST00000521341 1864 ntTSL 2 BASIC3.66□□□□□ -1.82
CCDC140Q96MF4 MYO9A-209ENST00000564571 8111 ntAPPRIS ALT2 TSL 1 (best) BASIC3.66□□□□□ -1.82
CCDC140Q96MF4 LYST-202ENST00000389794 12985 ntTSL 5 BASIC3.66□□□□□ -1.82
CCDC140Q96MF4 MACF1-203ENST00000361689 17538 ntTSL 5 BASIC3.66□□□□□ -1.82
CCDC140Q96MF4 OTUD4P1-201ENST00000237841 3067 ntBASIC3.66□□□□□ -1.82
CCDC140Q96MF4 KCNU1-201ENST00000399881 3695 ntAPPRIS P1 TSL 2 BASIC3.66□□□□□ -1.82
CCDC140Q96MF4 CAB39L-206ENST00000410043 1627 ntAPPRIS P1 TSL 1 (best) BASIC3.66□□□□□ -1.82
CCDC140Q96MF4 AC002546.1-201ENST00000588041 2504 ntBASIC3.66□□□□□ -1.82
CCDC140Q96MF4 PCDH11X-207ENST00000406881 4156 ntAPPRIS ALT2 TSL 1 (best) BASIC3.66□□□□□ -1.82
CCDC140Q96MF4 PCDH15-214ENST00000395446 3948 ntTSL 5 BASIC3.65□□□□□ -1.82
CCDC140Q96MF4 MUC7-201ENST00000304887 2443 ntAPPRIS P2 TSL 1 (best) BASIC3.65□□□□□ -1.82
CCDC140Q96MF4 LINC02458-201ENST00000500381 2941 ntTSL 2 BASIC3.65□□□□□ -1.82
Retrieved 100 of 98,524 protein–RNA pairs in 120.4 ms