Protein–RNA interactions for Protein: Q70EL1

USP54, Inactive ubiquitin carboxyl-terminal hydrolase 54, humanhuman

Predictions only

Length 1,684 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP54Q70EL1 AL159972.1-201ENST00000625150 448 ntBASIC1.13□□□□□ -2.23
USP54Q70EL1 AL359854.1-201ENST00000614203 1594 ntBASIC1.13□□□□□ -2.23
USP54Q70EL1 LRRIQ1-202ENST00000393217 5394 ntAPPRIS P1 TSL 1 (best) BASIC1.13□□□□□ -2.23
USP54Q70EL1 MIR330-201ENST00000362196 94 ntBASIC1.13□□□□□ -2.23
USP54Q70EL1 RNA5SP257-201ENST00000363023 116 ntBASIC1.13□□□□□ -2.23
USP54Q70EL1 HMGN2P39-201ENST00000398005 273 ntBASIC1.13□□□□□ -2.23
USP54Q70EL1 ATP6V0E1P3-201ENST00000420036 246 ntBASIC1.13□□□□□ -2.23
USP54Q70EL1 AL160275.3-201ENST00000423876 471 ntBASIC1.13□□□□□ -2.23
USP54Q70EL1 MTND4P24-201ENST00000424002 397 ntBASIC1.13□□□□□ -2.23
USP54Q70EL1 AC097347.1-201ENST00000438499 517 ntTSL 3 BASIC1.13□□□□□ -2.23
USP54Q70EL1 AL022238.1-201ENST00000442557 355 ntBASIC1.13□□□□□ -2.23
USP54Q70EL1 snoU109.1-201ENST00000459339 135 ntBASIC1.13□□□□□ -2.23
USP54Q70EL1 AC117503.1-201ENST00000472241 394 ntBASIC1.13□□□□□ -2.23
USP54Q70EL1 AP000942.2-201ENST00000526310 628 ntTSL 3 BASIC1.13□□□□□ -2.23
USP54Q70EL1 BNIP3P24-201ENST00000593398 557 ntBASIC1.13□□□□□ -2.23
USP54Q70EL1 AC005261.5-201ENST00000596280 355 ntBASIC1.13□□□□□ -2.23
USP54Q70EL1 AC079610.3-201ENST00000606960 147 ntTSL 3 BASIC1.13□□□□□ -2.23
USP54Q70EL1 AC010487.4-201ENST00000637027 61 ntBASIC1.13□□□□□ -2.23
USP54Q70EL1 SCOC-202ENST00000394201 1795 ntAPPRIS ALT1 TSL 1 (best) BASIC1.13□□□□□ -2.23
USP54Q70EL1 FGF7-202ENST00000560270 1688 ntTSL 1 (best) BASIC1.12□□□□□ -2.23
USP54Q70EL1 CCDC68-202ENST00000432185 4014 ntAPPRIS P1 TSL 1 (best) BASIC1.12□□□□□ -2.23
USP54Q70EL1 AC018630.2-201ENST00000534866 2403 ntBASIC1.12□□□□□ -2.23
USP54Q70EL1 SNORD114-2-201ENST00000363953 78 ntBASIC1.12□□□□□ -2.23
USP54Q70EL1 MIR193B-201ENST00000384907 83 ntBASIC1.12□□□□□ -2.23
USP54Q70EL1 MIR16-1-201ENST00000385271 89 ntBASIC1.12□□□□□ -2.23
USP54Q70EL1 MIR936-201ENST00000401264 98 ntBASIC1.12□□□□□ -2.23
USP54Q70EL1 AC011243.1-201ENST00000420184 415 ntTSL 3 BASIC1.12□□□□□ -2.23
USP54Q70EL1 AC244636.1-201ENST00000421152 228 ntBASIC1.12□□□□□ -2.23
USP54Q70EL1 AL391069.1-201ENST00000422153 358 ntTSL 3 BASIC1.12□□□□□ -2.23
USP54Q70EL1 TXNDC8-204ENST00000423740 356 ntTSL 1 (best) BASIC1.12□□□□□ -2.23
USP54Q70EL1 LINC01680-201ENST00000434983 299 ntTSL 2 BASIC1.12□□□□□ -2.23
USP54Q70EL1 AL161788.1-201ENST00000441805 169 ntBASIC1.12□□□□□ -2.23
USP54Q70EL1 LINC02382-201ENST00000515840 614 ntTSL 1 (best) BASIC1.12□□□□□ -2.23
USP54Q70EL1 RNA5SP137-201ENST00000516833 135 ntBASIC1.12□□□□□ -2.23
USP54Q70EL1 AC007991.3-201ENST00000517623 502 ntTSL 4 BASIC1.12□□□□□ -2.23
USP54Q70EL1 AC011131.1-201ENST00000521224 252 ntTSL 2 BASIC1.12□□□□□ -2.23
USP54Q70EL1 MRPL42-203ENST00000547098 701 ntTSL 3 BASIC1.12□□□□□ -2.23
USP54Q70EL1 AC093519.1-201ENST00000566109 298 ntBASIC1.12□□□□□ -2.23
USP54Q70EL1 AL391813.1-201ENST00000603098 260 ntBASIC1.12□□□□□ -2.23
USP54Q70EL1 AP003973.1-201ENST00000604639 691 ntBASIC1.12□□□□□ -2.23
USP54Q70EL1 AC092953.2-201ENST00000608000 699 ntBASIC1.12□□□□□ -2.23
USP54Q70EL1 AL163051.2-201ENST00000618976 735 ntBASIC1.12□□□□□ -2.23
USP54Q70EL1 NPAT-201ENST00000278612 6117 ntAPPRIS P2 TSL 1 (best) BASIC1.11□□□□□ -2.23
USP54Q70EL1 MIR126-201ENST00000362291 85 ntBASIC1.11□□□□□ -2.23
USP54Q70EL1 RNU6-741P-201ENST00000383889 107 ntBASIC1.11□□□□□ -2.23
USP54Q70EL1 RNU2-41P-201ENST00000410991 178 ntBASIC1.11□□□□□ -2.23
USP54Q70EL1 RNU6-516P-201ENST00000411381 104 ntBASIC1.11□□□□□ -2.23
USP54Q70EL1 SNRPG-202ENST00000413456 398 ntTSL 3 BASIC1.11□□□□□ -2.23
USP54Q70EL1 CCDC58P2-201ENST00000417131 366 ntBASIC1.11□□□□□ -2.23
USP54Q70EL1 TRBV25OR9-2-201ENST00000438417 374 ntBASIC1.11□□□□□ -2.23
USP54Q70EL1 AC114485.1-201ENST00000447916 657 ntTSL 3 BASIC1.11□□□□□ -2.23
USP54Q70EL1 TSPY5P-202ENST00000456541 142 ntTSL 3 BASIC1.11□□□□□ -2.23
USP54Q70EL1 RPS23P4-201ENST00000487908 423 ntBASIC1.11□□□□□ -2.23
USP54Q70EL1 RPL22P13-201ENST00000493291 347 ntBASIC1.11□□□□□ -2.23
USP54Q70EL1 SNORA31.6-201ENST00000516241 130 ntBASIC1.11□□□□□ -2.23
USP54Q70EL1 RNA5SP330-201ENST00000517096 96 ntBASIC1.11□□□□□ -2.23
USP54Q70EL1 AC107953.1-201ENST00000522216 297 ntBASIC1.11□□□□□ -2.23
USP54Q70EL1 IGJP1-201ENST00000522682 475 ntBASIC1.11□□□□□ -2.23
USP54Q70EL1 LINC01493-203ENST00000534756 509 ntTSL 3 BASIC1.11□□□□□ -2.23
USP54Q70EL1 AC092451.2-201ENST00000538746 658 ntBASIC1.11□□□□□ -2.23
USP54Q70EL1 LINC02286-201ENST00000552425 285 ntTSL 2 BASIC1.11□□□□□ -2.23
USP54Q70EL1 SULT1C2P1-202ENST00000562418 459 ntBASIC1.11□□□□□ -2.23
USP54Q70EL1 MIR1273G-201ENST00000577677 100 ntBASIC1.11□□□□□ -2.23
USP54Q70EL1 MIR4713-201ENST00000582691 75 ntBASIC1.11□□□□□ -2.23
USP54Q70EL1 AC243960.4-201ENST00000600532 288 ntBASIC1.11□□□□□ -2.23
USP54Q70EL1 AP001429.1-201ENST00000602568 530 ntBASIC1.11□□□□□ -2.23
USP54Q70EL1 AC008121.1-201ENST00000603244 268 ntBASIC1.11□□□□□ -2.23
USP54Q70EL1 AP001033.2-201ENST00000609701 1003 ntBASIC1.11□□□□□ -2.23
USP54Q70EL1 AC007742.2-201ENST00000618226 398 ntBASIC1.11□□□□□ -2.23
USP54Q70EL1 MIR6513-201ENST00000621188 64 ntBASIC1.11□□□□□ -2.23
USP54Q70EL1 AC004009.2-201ENST00000623016 728 ntBASIC1.11□□□□□ -2.23
USP54Q70EL1 RNU6-619P-201ENST00000365146 108 ntBASIC1.1□□□□□ -2.23
USP54Q70EL1 RNU6-17P-201ENST00000384245 107 ntBASIC1.1□□□□□ -2.23
USP54Q70EL1 RNU6-18P-201ENST00000384527 107 ntBASIC1.1□□□□□ -2.23
USP54Q70EL1 FBXO11-203ENST00000405808 299 ntTSL 5 BASIC1.1□□□□□ -2.23
USP54Q70EL1 AL161935.1-201ENST00000420945 421 ntTSL 3 BASIC1.1□□□□□ -2.23
USP54Q70EL1 FAM204CP-201ENST00000424489 642 ntBASIC1.1□□□□□ -2.23
USP54Q70EL1 LINC02095-201ENST00000430908 346 ntTSL 2 BASIC1.1□□□□□ -2.23
USP54Q70EL1 TPTE2P1-204ENST00000435256 593 ntBASIC1.1□□□□□ -2.23
USP54Q70EL1 AL691517.1-201ENST00000440833 1235 ntBASIC1.1□□□□□ -2.23
USP54Q70EL1 MTND3P4-201ENST00000453537 303 ntBASIC1.1□□□□□ -2.23
USP54Q70EL1 CEP70-205ENST00000464035 1054 ntTSL 1 (best) BASIC1.1□□□□□ -2.23
USP54Q70EL1 AC005908.1-201ENST00000468701 347 ntBASIC1.1□□□□□ -2.23
USP54Q70EL1 HMGB1P36-201ENST00000487709 576 ntBASIC1.1□□□□□ -2.23
USP54Q70EL1 RNU6ATAC13P-201ENST00000516152 131 ntBASIC1.1□□□□□ -2.23
USP54Q70EL1 AL450442.1-201ENST00000554042 854 ntTSL 1 (best) BASIC1.1□□□□□ -2.23
USP54Q70EL1 AC026271.5-201ENST00000577873 130 ntBASIC1.1□□□□□ -2.23
USP54Q70EL1 AC022960.1-201ENST00000582269 348 ntTSL 3 BASIC1.1□□□□□ -2.23
USP54Q70EL1 ZNF849P-201ENST00000594711 1566 ntBASIC1.1□□□□□ -2.23
USP54Q70EL1 SNORA23-201ENST00000365128 182 ntBASIC1.1□□□□□ -2.23
USP54Q70EL1 RNU6-1005P-201ENST00000384519 107 ntBASIC1.1□□□□□ -2.23
USP54Q70EL1 RNU6-878P-201ENST00000384578 110 ntBASIC1.1□□□□□ -2.23
USP54Q70EL1 SFR1P2-201ENST00000421841 730 ntBASIC1.1□□□□□ -2.23
USP54Q70EL1 CR848007.2-201ENST00000424918 787 ntBASIC1.1□□□□□ -2.23
USP54Q70EL1 AL590623.1-201ENST00000427864 105 ntBASIC1.1□□□□□ -2.23
USP54Q70EL1 AL050341.1-201ENST00000447743 313 ntBASIC1.1□□□□□ -2.23
USP54Q70EL1 AL353718.1-201ENST00000451028 517 ntBASIC1.1□□□□□ -2.23
USP54Q70EL1 AC013828.1-201ENST00000481845 158 ntBASIC1.1□□□□□ -2.23
USP54Q70EL1 AC131211.1-201ENST00000497285 483 ntTSL 5 BASIC1.1□□□□□ -2.23
USP54Q70EL1 AL359273.1-202ENST00000505585 905 ntTSL 1 (best) BASIC1.1□□□□□ -2.23
Retrieved 100 of 98,524 protein–RNA pairs in 112.2 ms