Protein–RNA interactions for Protein: Q3L8U1

CHD9, Chromodomain-helicase-DNA-binding protein 9, humanhuman

Predictions only

Length 2,897 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHD9Q3L8U1 AC239802.1-201ENST00000531288 406 ntTSL 5 BASIC0.55□□□□□ -2.32
CHD9Q3L8U1 AC015688.2-201ENST00000584523 262 ntBASIC0.55□□□□□ -2.32
CHD9Q3L8U1 AL589743.7-201ENST00000612637 233 ntBASIC0.55□□□□□ -2.32
CHD9Q3L8U1 FRG1HP-204ENST00000617940 757 ntBASIC0.55□□□□□ -2.32
CHD9Q3L8U1 AC040168.1-201ENST00000623594 991 ntBASIC0.55□□□□□ -2.32
CHD9Q3L8U1 AL109837.2-201ENST00000632608 295 ntTSL 3 BASIC0.55□□□□□ -2.32
CHD9Q3L8U1 PTPN22-206ENST00000525799 2118 ntTSL 1 (best) BASIC0.55□□□□□ -2.32
CHD9Q3L8U1 AC069228.1-201ENST00000546936 1615 ntTSL 3 BASIC0.55□□□□□ -2.32
CHD9Q3L8U1 RNU6-374P-201ENST00000364146 108 ntBASIC0.55□□□□□ -2.32
CHD9Q3L8U1 Z99497.1-201ENST00000421282 135 ntBASIC0.55□□□□□ -2.32
CHD9Q3L8U1 NAALADL2-AS1-201ENST00000426315 804 ntTSL 5 BASIC0.55□□□□□ -2.32
CHD9Q3L8U1 LINC01953-201ENST00000426870 717 ntTSL 5 BASIC0.55□□□□□ -2.32
CHD9Q3L8U1 AC023128.1-201ENST00000432431 799 ntTSL 3 BASIC0.55□□□□□ -2.32
CHD9Q3L8U1 MTND5P15-201ENST00000434246 349 ntBASIC0.55□□□□□ -2.32
CHD9Q3L8U1 AL591848.2-201ENST00000442712 522 ntTSL 3 BASIC0.55□□□□□ -2.32
CHD9Q3L8U1 AL035666.1-201ENST00000446195 348 ntBASIC0.55□□□□□ -2.32
CHD9Q3L8U1 AC092685.1-201ENST00000447960 1243 ntBASIC0.55□□□□□ -2.32
CHD9Q3L8U1 AC011998.3-201ENST00000457053 254 ntTSL 3 BASIC0.55□□□□□ -2.32
CHD9Q3L8U1 HMGN2P9-201ENST00000476875 229 ntBASIC0.55□□□□□ -2.32
CHD9Q3L8U1 AC074033.2-201ENST00000480669 535 ntTSL 3 BASIC0.55□□□□□ -2.32
CHD9Q3L8U1 GYPA-204ENST00000504786 357 ntTSL 1 (best) BASIC0.55□□□□□ -2.32
CHD9Q3L8U1 SNORA44.1-201ENST00000517031 108 ntBASIC0.55□□□□□ -2.32
CHD9Q3L8U1 OR6C68-201ENST00000548615 939 ntAPPRIS P1 BASIC0.55□□□□□ -2.32
CHD9Q3L8U1 MTCYBP23-201ENST00000558717 1102 ntBASIC0.55□□□□□ -2.32
CHD9Q3L8U1 AP000238.1-201ENST00000608759 426 ntBASIC0.55□□□□□ -2.32
CHD9Q3L8U1 AC004908.2-201ENST00000609090 574 ntBASIC0.55□□□□□ -2.32
CHD9Q3L8U1 AL445584.2-201ENST00000614030 616 ntTSL 5 BASIC0.55□□□□□ -2.32
CHD9Q3L8U1 AC110491.1-201ENST00000562191 2010 ntBASIC0.54□□□□□ -2.32
CHD9Q3L8U1 LINC01790-201ENST00000447194 2852 ntTSL 2 BASIC0.54□□□□□ -2.32
CHD9Q3L8U1 RPL39-201ENST00000361575 401 ntAPPRIS P1 TSL 1 (best) BASIC0.54□□□□□ -2.32
CHD9Q3L8U1 Y_RNA.142-201ENST00000363491 102 ntBASIC0.54□□□□□ -2.32
CHD9Q3L8U1 MIR515-2-201ENST00000384883 83 ntBASIC0.54□□□□□ -2.32
CHD9Q3L8U1 MIR515-1-201ENST00000384884 83 ntBASIC0.54□□□□□ -2.32
CHD9Q3L8U1 MIR561-201ENST00000385216 97 ntBASIC0.54□□□□□ -2.32
CHD9Q3L8U1 RNA5SP299-201ENST00000391203 116 ntBASIC0.54□□□□□ -2.32
CHD9Q3L8U1 RNU2-63P-201ENST00000410792 194 ntBASIC0.54□□□□□ -2.32
CHD9Q3L8U1 RNA5SP450-201ENST00000411206 102 ntBASIC0.54□□□□□ -2.32
CHD9Q3L8U1 AC007742.1-201ENST00000425789 329 ntBASIC0.54□□□□□ -2.32
CHD9Q3L8U1 ELOCP26-201ENST00000436067 329 ntBASIC0.54□□□□□ -2.32
CHD9Q3L8U1 AL353764.1-201ENST00000442072 474 ntTSL 2 BASIC0.54□□□□□ -2.32
CHD9Q3L8U1 RAC1P7-201ENST00000445367 377 ntBASIC0.54□□□□□ -2.32
CHD9Q3L8U1 AL359915.2-203ENST00000457043 540 ntTSL 3 BASIC0.54□□□□□ -2.32
CHD9Q3L8U1 CPHL1P-203ENST00000471823 523 ntTSL 5 BASIC0.54□□□□□ -2.32
CHD9Q3L8U1 HMGN1P10-201ENST00000474557 553 ntBASIC0.54□□□□□ -2.32
CHD9Q3L8U1 AC020699.1-201ENST00000505161 445 ntBASIC0.54□□□□□ -2.32
CHD9Q3L8U1 AC105343.1-201ENST00000505586 358 ntTSL 3 BASIC0.54□□□□□ -2.32
CHD9Q3L8U1 AC096577.1-203ENST00000506386 541 ntTSL 3 BASIC0.54□□□□□ -2.32
CHD9Q3L8U1 AC025857.1-201ENST00000525252 377 ntBASIC0.54□□□□□ -2.32
CHD9Q3L8U1 LINC02311-202ENST00000556819 477 ntTSL 3 BASIC0.54□□□□□ -2.32
CHD9Q3L8U1 LINC02210-208ENST00000585118 546 ntTSL 1 (best) BASIC0.54□□□□□ -2.32
CHD9Q3L8U1 AC007792.1-201ENST00000623023 402 ntBASIC0.54□□□□□ -2.32
CHD9Q3L8U1 RNU2-43P-201ENST00000410306 190 ntBASIC0.54□□□□□ -2.32
CHD9Q3L8U1 AC023141.4-201ENST00000412031 328 ntBASIC0.54□□□□□ -2.32
CHD9Q3L8U1 AC093106.2-201ENST00000428212 385 ntBASIC0.54□□□□□ -2.32
CHD9Q3L8U1 FO393419.3-201ENST00000428741 282 ntBASIC0.54□□□□□ -2.32
CHD9Q3L8U1 AL390879.2-204ENST00000438602 582 ntTSL 3 BASIC0.54□□□□□ -2.32
CHD9Q3L8U1 AL157882.1-201ENST00000447148 429 ntTSL 3 BASIC0.54□□□□□ -2.32
CHD9Q3L8U1 Z82190.1-201ENST00000454534 490 ntBASIC0.54□□□□□ -2.32
CHD9Q3L8U1 AC008834.1-201ENST00000511612 175 ntBASIC0.54□□□□□ -2.32
CHD9Q3L8U1 RNU6-362P-201ENST00000516736 90 ntBASIC0.54□□□□□ -2.32
CHD9Q3L8U1 LINC01608-201ENST00000523557 544 ntTSL 4 BASIC0.54□□□□□ -2.32
CHD9Q3L8U1 AP000756.1-201ENST00000532606 679 ntTSL 2 BASIC0.54□□□□□ -2.32
CHD9Q3L8U1 AC068643.2-202ENST00000552759 622 ntTSL 3 BASIC0.54□□□□□ -2.32
CHD9Q3L8U1 HMGB1P14-201ENST00000557424 591 ntBASIC0.54□□□□□ -2.32
CHD9Q3L8U1 LINC00557-201ENST00000563184 1279 ntBASIC0.54□□□□□ -2.32
CHD9Q3L8U1 MTRNR2L2-201ENST00000604882 87 ntBASIC0.54□□□□□ -2.32
CHD9Q3L8U1 DUXAP10-204ENST00000612052 616 ntBASIC0.54□□□□□ -2.32
CHD9Q3L8U1 AL773524.1-201ENST00000614065 229 ntBASIC0.54□□□□□ -2.32
CHD9Q3L8U1 ZEB2_AS1_1.1-201ENST00000621504 128 ntBASIC0.54□□□□□ -2.32
CHD9Q3L8U1 MIR5087-201ENST00000635826 76 ntBASIC0.54□□□□□ -2.32
CHD9Q3L8U1 MTCO1P23-201ENST00000415223 1526 ntBASIC0.53□□□□□ -2.32
CHD9Q3L8U1 SNORA63.3-201ENST00000362682 132 ntBASIC0.53□□□□□ -2.32
CHD9Q3L8U1 RNU6-1083P-201ENST00000384022 107 ntBASIC0.53□□□□□ -2.32
CHD9Q3L8U1 Y_RNA.488-201ENST00000384403 102 ntBASIC0.53□□□□□ -2.32
CHD9Q3L8U1 SNORA8-201ENST00000384574 139 ntBASIC0.53□□□□□ -2.32
CHD9Q3L8U1 LINC02331-201ENST00000418927 602 ntTSL 5 BASIC0.53□□□□□ -2.32
CHD9Q3L8U1 AL161935.1-201ENST00000420945 421 ntTSL 3 BASIC0.53□□□□□ -2.32
CHD9Q3L8U1 U51244.1-201ENST00000423120 374 ntTSL 3 BASIC0.53□□□□□ -2.32
CHD9Q3L8U1 LINC02095-201ENST00000430908 346 ntTSL 2 BASIC0.53□□□□□ -2.32
CHD9Q3L8U1 AP003066.2-201ENST00000529375 555 ntBASIC0.53□□□□□ -2.32
CHD9Q3L8U1 AP003327.1-201ENST00000529684 127 ntBASIC0.53□□□□□ -2.32
CHD9Q3L8U1 AC005774.1-201ENST00000565247 567 ntTSL 4 BASIC0.53□□□□□ -2.32
CHD9Q3L8U1 AC006213.4-201ENST00000616184 634 ntBASIC0.53□□□□□ -2.32
CHD9Q3L8U1 AC243829.3-201ENST00000622177 108 ntBASIC0.53□□□□□ -2.32
CHD9Q3L8U1 AC007490.1-201ENST00000624321 703 ntBASIC0.53□□□□□ -2.32
CHD9Q3L8U1 HMHB1-202ENST00000638299 126 ntAPPRIS P2 TSL 1 (best) BASIC0.53□□□□□ -2.32
CHD9Q3L8U1 LINC01938-201ENST00000521341 1864 ntTSL 2 BASIC0.53□□□□□ -2.32
CHD9Q3L8U1 ZNF702P-202ENST00000434269 1966 ntBASIC0.53□□□□□ -2.32
CHD9Q3L8U1 RNU6-884P-201ENST00000363889 107 ntBASIC0.53□□□□□ -2.32
CHD9Q3L8U1 AC064852.1-201ENST00000427571 851 ntTSL 3 BASIC0.53□□□□□ -2.32
CHD9Q3L8U1 Z80107.1-201ENST00000436830 412 ntBASIC0.53□□□□□ -2.32
CHD9Q3L8U1 AC104692.1-201ENST00000472406 90 ntBASIC0.53□□□□□ -2.32
CHD9Q3L8U1 AP001025.1-201ENST00000486139 332 ntBASIC0.53□□□□□ -2.32
CHD9Q3L8U1 SNORA31.6-201ENST00000516241 130 ntBASIC0.53□□□□□ -2.32
CHD9Q3L8U1 AP003110.1-201ENST00000526976 717 ntTSL 1 (best) BASIC0.53□□□□□ -2.32
CHD9Q3L8U1 AP005639.2-201ENST00000527592 928 ntBASIC0.53□□□□□ -2.32
CHD9Q3L8U1 LINC01584-203ENST00000567231 646 ntTSL 5 BASIC0.53□□□□□ -2.32
CHD9Q3L8U1 AC008121.1-201ENST00000603244 268 ntBASIC0.53□□□□□ -2.32
CHD9Q3L8U1 AC025588.3-201ENST00000604182 274 ntBASIC0.53□□□□□ -2.32
CHD9Q3L8U1 AC025588.2-201ENST00000604851 466 ntBASIC0.53□□□□□ -2.32
Retrieved 100 of 98,524 protein–RNA pairs in 102.1 ms