Protein–RNA interactions for Protein: P78317

RNF4, E3 ubiquitin-protein ligase RNF4, humanhuman

Predictions only

Length 190 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4P78317 Z82188.1-201ENST00000436709 154 ntBASIC4.11□□□□□ -1.75
RNF4P78317 SUMO1P3-201ENST00000439961 304 ntBASIC4.11□□□□□ -1.75
RNF4P78317 TAB3-AS2-201ENST00000445240 292 ntTSL 5 BASIC4.11□□□□□ -1.75
RNF4P78317 TTTY23B-202ENST00000451467 512 ntTSL 1 (best) BASIC4.11□□□□□ -1.75
RNF4P78317 LINC01032-201ENST00000451690 276 ntTSL 5 BASIC4.11□□□□□ -1.75
RNF4P78317 TTTY23-201ENST00000452889 512 ntTSL 1 (best) BASIC4.11□□□□□ -1.75
RNF4P78317 CEACAMP4-201ENST00000457676 421 ntBASIC4.11□□□□□ -1.75
RNF4P78317 RN7SL810P-201ENST00000493031 276 ntBASIC4.11□□□□□ -1.75
RNF4P78317 UBE2CP3-201ENST00000502715 450 ntBASIC4.11□□□□□ -1.75
RNF4P78317 AC093534.2-201ENST00000511418 420 ntTSL 3 BASIC4.11□□□□□ -1.75
RNF4P78317 AC093840.1-201ENST00000511599 336 ntBASIC4.11□□□□□ -1.75
RNF4P78317 AC010265.1-201ENST00000513509 211 ntBASIC4.11□□□□□ -1.75
RNF4P78317 AC010186.2-204ENST00000537668 439 ntBASIC4.11□□□□□ -1.75
RNF4P78317 AC092747.1-202ENST00000540595 380 ntTSL 5 BASIC4.11□□□□□ -1.75
RNF4P78317 AC021979.1-201ENST00000553822 336 ntTSL 3 BASIC4.11□□□□□ -1.75
RNF4P78317 H3F3AP1-201ENST00000559984 334 ntBASIC4.11□□□□□ -1.75
RNF4P78317 UBE2Q2P8-201ENST00000560644 102 ntBASIC4.11□□□□□ -1.75
RNF4P78317 CYCSP39-201ENST00000565821 309 ntBASIC4.11□□□□□ -1.75
RNF4P78317 AC097467.3-205ENST00000597955 594 ntTSL 5 BASIC4.11□□□□□ -1.75
RNF4P78317 RPL23AP78-201ENST00000599928 470 ntBASIC4.11□□□□□ -1.75
RNF4P78317 AL355877.2-201ENST00000603670 358 ntBASIC4.11□□□□□ -1.75
RNF4P78317 SCARNA4-202ENST00000625402 129 ntBASIC4.11□□□□□ -1.75
RNF4P78317 KIAA1524-208ENST00000625495 147 ntTSL 5 BASIC4.11□□□□□ -1.75
RNF4P78317 UBE2E2-207ENST00000628311 267 ntTSL 5 BASIC4.11□□□□□ -1.75
RNF4P78317 RNF111-206ENST00000559209 5278 ntTSL 1 (best) BASIC4.11□□□□□ -1.75
RNF4P78317 MLH3-212ENST00000556740 4491 ntAPPRIS P1 TSL 1 (best) BASIC4.11□□□□□ -1.75
RNF4P78317 PATJ-202ENST00000316485 3657 ntTSL 5 BASIC4.11□□□□□ -1.75
RNF4P78317 CAPS2-206ENST00000409799 1859 ntTSL 1 (best) BASIC4.11□□□□□ -1.75
RNF4P78317 TEX9-207ENST00000560582 2005 ntTSL 3 BASIC4.11□□□□□ -1.75
RNF4P78317 NFIB-210ENST00000543693 7622 ntTSL 1 (best) BASIC4.11□□□□□ -1.75
RNF4P78317 ORMDL1-201ENST00000325795 2692 ntAPPRIS P1 TSL 1 (best) BASIC4.1□□□□□ -1.75
RNF4P78317 WDFY3-201ENST00000295888 14247 ntAPPRIS P1 TSL 1 (best) BASIC4.1□□□□□ -1.75
RNF4P78317 ZNF208-207ENST00000609966 3653 ntTSL 5 BASIC4.1□□□□□ -1.75
RNF4P78317 FTLP6-201ENST00000355274 422 ntBASIC4.1□□□□□ -1.75
RNF4P78317 RNU6-105P-201ENST00000363909 104 ntBASIC4.1□□□□□ -1.75
RNF4P78317 SNORD27-201ENST00000363981 72 ntBASIC4.1□□□□□ -1.75
RNF4P78317 Y_RNA.518-201ENST00000384552 113 ntBASIC4.1□□□□□ -1.75
RNF4P78317 RNU6-1197P-201ENST00000391183 107 ntBASIC4.1□□□□□ -1.75
RNF4P78317 AL603908.1-201ENST00000406098 201 ntBASIC4.1□□□□□ -1.75
RNF4P78317 MIR548I3-201ENST00000408378 149 ntBASIC4.1□□□□□ -1.75
RNF4P78317 MIR548I1-201ENST00000408810 149 ntBASIC4.1□□□□□ -1.75
RNF4P78317 SDAD1P3-201ENST00000427380 333 ntBASIC4.1□□□□□ -1.75
RNF4P78317 AL512844.2-201ENST00000433990 593 ntBASIC4.1□□□□□ -1.75
RNF4P78317 PHBP16-201ENST00000446318 950 ntBASIC4.1□□□□□ -1.75
RNF4P78317 AP000844.1-201ENST00000446631 577 ntTSL 3 BASIC4.1□□□□□ -1.75
RNF4P78317 LINC01510-203ENST00000458082 626 ntTSL 3 BASIC4.1□□□□□ -1.75
RNF4P78317 AC011276.1-201ENST00000469688 323 ntBASIC4.1□□□□□ -1.75
RNF4P78317 AC078817.1-201ENST00000492623 435 ntBASIC4.1□□□□□ -1.75
RNF4P78317 RPL23AP49-201ENST00000492925 468 ntBASIC4.1□□□□□ -1.75
RNF4P78317 AC108022.1-201ENST00000493466 478 ntBASIC4.1□□□□□ -1.75
RNF4P78317 RNU6-1183P-201ENST00000517054 60 ntBASIC4.1□□□□□ -1.75
RNF4P78317 RNU6-111P-201ENST00000517179 105 ntBASIC4.1□□□□□ -1.75
RNF4P78317 AC091144.1-201ENST00000519573 138 ntBASIC4.1□□□□□ -1.75
RNF4P78317 AP006287.2-201ENST00000529036 502 ntTSL 2 BASIC4.1□□□□□ -1.75
RNF4P78317 TOMM20P2-201ENST00000540082 421 ntBASIC4.1□□□□□ -1.75
RNF4P78317 AL442163.3-201ENST00000554110 156 ntBASIC4.1□□□□□ -1.75
RNF4P78317 AC104581.2-201ENST00000572227 430 ntBASIC4.1□□□□□ -1.75
RNF4P78317 AC060766.3-201ENST00000591442 263 ntBASIC4.1□□□□□ -1.75
RNF4P78317 AC079587.1-201ENST00000603846 277 ntBASIC4.1□□□□□ -1.75
RNF4P78317 MIR663AHG-231ENST00000609044 590 ntTSL 5 BASIC4.1□□□□□ -1.75
RNF4P78317 AP001282.2-201ENST00000616149 309 ntBASIC4.1□□□□□ -1.75
RNF4P78317 AC243829.7-201ENST00000633081 225 ntBASIC4.1□□□□□ -1.75
RNF4P78317 AL359313.1-202ENST00000635073 544 ntTSL 4 BASIC4.1□□□□□ -1.75
RNF4P78317 LINC02120-201ENST00000505518 2008 ntTSL 1 (best) BASIC4.1□□□□□ -1.75
RNF4P78317 WDR49-207ENST00000479765 2108 ntTSL 2 BASIC4.1□□□□□ -1.75
RNF4P78317 EYA4-202ENST00000355286 4317 ntAPPRIS ALT1 TSL 1 (best) BASIC4.1□□□□□ -1.75
RNF4P78317 AC106871.1-201ENST00000568324 3102 ntBASIC4.1□□□□□ -1.75
RNF4P78317 SYT14-208ENST00000637265 13567 ntTSL 5 BASIC4.1□□□□□ -1.75
RNF4P78317 CNGB3-201ENST00000320005 4347 ntAPPRIS P1 TSL 1 (best) BASIC4.09□□□□□ -1.75
RNF4P78317 AC009541.1-201ENST00000438279 2662 ntBASIC4.09□□□□□ -1.75
RNF4P78317 CNOT2-231ENST00000551483 4753 ntTSL 2 BASIC4.09□□□□□ -1.75
RNF4P78317 TMEM106B-201ENST00000396667 12539 ntAPPRIS P1 TSL 1 (best) BASIC4.09□□□□□ -1.75
RNF4P78317 C6orf10-207ENST00000533191 2170 ntAPPRIS ALT2 TSL 1 (best) BASIC4.09□□□□□ -1.75
RNF4P78317 PANK1-202ENST00000322191 2513 ntTSL 1 (best) BASIC4.09□□□□□ -1.75
RNF4P78317 Y_RNA.84-201ENST00000363011 104 ntBASIC4.09□□□□□ -1.75
RNF4P78317 RNU6-527P-201ENST00000363425 104 ntBASIC4.09□□□□□ -1.75
RNF4P78317 RNA5SP509-201ENST00000364577 119 ntBASIC4.09□□□□□ -1.75
RNF4P78317 U3.13-201ENST00000364804 214 ntBASIC4.09□□□□□ -1.75
RNF4P78317 Z98749.2-208ENST00000381646 500 ntBASIC4.09□□□□□ -1.75
RNF4P78317 BTF3L4P2-201ENST00000392798 346 ntBASIC4.09□□□□□ -1.75
RNF4P78317 RNU6-1203P-201ENST00000410703 110 ntBASIC4.09□□□□□ -1.75
RNF4P78317 RNA5SP31-201ENST00000411144 127 ntBASIC4.09□□□□□ -1.75
RNF4P78317 RNU2-64P-201ENST00000411315 191 ntBASIC4.09□□□□□ -1.75
RNF4P78317 RPS20P14-201ENST00000412545 360 ntBASIC4.09□□□□□ -1.75
RNF4P78317 MAP1LC3BP1-201ENST00000417653 379 ntBASIC4.09□□□□□ -1.75
RNF4P78317 AC069079.1-201ENST00000419889 400 ntTSL 3 BASIC4.09□□□□□ -1.75
RNF4P78317 AL445259.1-203ENST00000427828 251 ntTSL 3 BASIC4.09□□□□□ -1.75
RNF4P78317 RPS29P17-201ENST00000430795 166 ntBASIC4.09□□□□□ -1.75
RNF4P78317 AL590664.1-201ENST00000448065 339 ntBASIC4.09□□□□□ -1.75
RNF4P78317 RN7SL98P-201ENST00000462271 300 ntBASIC4.09□□□□□ -1.75
RNF4P78317 RPL23AP65-201ENST00000475608 468 ntBASIC4.09□□□□□ -1.75
RNF4P78317 LINC02046-202ENST00000481334 390 ntTSL 3 BASIC4.09□□□□□ -1.75
RNF4P78317 RNU7-175P-201ENST00000515915 61 ntBASIC4.09□□□□□ -1.75
RNF4P78317 RN7SKP272-201ENST00000516988 232 ntBASIC4.09□□□□□ -1.75
RNF4P78317 AC068992.1-201ENST00000521411 543 ntTSL 5 BASIC4.09□□□□□ -1.75
RNF4P78317 MRPS36P4-201ENST00000534436 298 ntBASIC4.09□□□□□ -1.75
RNF4P78317 TMEM106C-220ENST00000552561 810 ntAPPRIS P1 TSL 1 (best) BASIC4.09□□□□□ -1.75
RNF4P78317 AC099793.1-201ENST00000567538 285 ntTSL 3 BASIC4.09□□□□□ -1.75
RNF4P78317 AC020895.1-201ENST00000595362 272 ntBASIC4.09□□□□□ -1.75
RNF4P78317 RPL7P50-201ENST00000600588 727 ntBASIC4.09□□□□□ -1.75
Retrieved 100 of 98,524 protein–RNA pairs in 115.3 ms