Protein–RNA interactions for Protein: P49916

LIG3, DNA ligase 3, humanhuman

Predictions only

Length 1,009 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3P49916 AC133865.1-201ENST00000438619 339 ntTSL 3 BASIC4.45□□□□□ -1.7
LIG3P49916 PCNPP5-201ENST00000452246 481 ntBASIC4.45□□□□□ -1.7
LIG3P49916 RPL30P10-201ENST00000488148 337 ntBASIC4.45□□□□□ -1.7
LIG3P49916 LINC02110-201ENST00000503870 546 ntTSL 3 BASIC4.45□□□□□ -1.7
LIG3P49916 AC005921.1-201ENST00000510589 286 ntBASIC4.45□□□□□ -1.7
LIG3P49916 RNU6-911P-201ENST00000516523 104 ntBASIC4.45□□□□□ -1.7
LIG3P49916 MIR4782-201ENST00000577987 79 ntBASIC4.45□□□□□ -1.7
LIG3P49916 AL590235.2-201ENST00000602641 632 ntTSL 5 BASIC4.45□□□□□ -1.7
LIG3P49916 MTND4LP5-201ENST00000605152 292 ntBASIC4.45□□□□□ -1.7
LIG3P49916 AC008962.1-201ENST00000605729 304 ntBASIC4.45□□□□□ -1.7
LIG3P49916 AC083809.1-201ENST00000615051 472 ntBASIC4.45□□□□□ -1.7
LIG3P49916 AC011944.2-201ENST00000624440 683 ntBASIC4.45□□□□□ -1.7
LIG3P49916 PP2D1-202ENST00000389050 2151 ntAPPRIS P1 TSL 5 BASIC4.45□□□□□ -1.7
LIG3P49916 ZBED5-201ENST00000413761 2512 ntAPPRIS P1 TSL 1 (best) BASIC4.45□□□□□ -1.7
LIG3P49916 AC118273.1-201ENST00000525324 3006 ntBASIC4.45□□□□□ -1.7
LIG3P49916 OR6P1-202ENST00000641540 3255 ntAPPRIS P1 BASIC4.45□□□□□ -1.7
LIG3P49916 ACSM3-201ENST00000289416 2845 ntAPPRIS P1 TSL 1 (best) BASIC4.45□□□□□ -1.7
LIG3P49916 HSPA8P1-201ENST00000425843 1833 ntBASIC4.44□□□□□ -1.7
LIG3P49916 ARHGAP28-202ENST00000314319 5415 ntAPPRIS P2 TSL 5 BASIC4.44□□□□□ -1.7
LIG3P49916 SLC15A5-201ENST00000344941 2923 ntAPPRIS P1 TSL 5 BASIC4.44□□□□□ -1.7
LIG3P49916 HSP90AA4P-202ENST00000506915 2228 ntBASIC4.44□□□□□ -1.7
LIG3P49916 RNU6-227P-201ENST00000362865 103 ntBASIC4.44□□□□□ -1.7
LIG3P49916 Y_RNA.307-201ENST00000365022 117 ntBASIC4.44□□□□□ -1.7
LIG3P49916 Y_RNA.396-201ENST00000383949 103 ntBASIC4.44□□□□□ -1.7
LIG3P49916 RNU6-72P-201ENST00000384285 79 ntBASIC4.44□□□□□ -1.7
LIG3P49916 MIR325-201ENST00000385260 98 ntBASIC4.44□□□□□ -1.7
LIG3P49916 RNU6-1197P-201ENST00000391183 107 ntBASIC4.44□□□□□ -1.7
LIG3P49916 PPIAP31-201ENST00000405422 495 ntBASIC4.44□□□□□ -1.7
LIG3P49916 AC092047.1-201ENST00000424997 240 ntBASIC4.44□□□□□ -1.7
LIG3P49916 RPS29P17-201ENST00000430795 166 ntBASIC4.44□□□□□ -1.7
LIG3P49916 VDAC1P3-201ENST00000434069 851 ntBASIC4.44□□□□□ -1.7
LIG3P49916 AC008080.3-201ENST00000440074 380 ntTSL 3 BASIC4.44□□□□□ -1.7
LIG3P49916 PHBP16-201ENST00000446318 950 ntBASIC4.44□□□□□ -1.7
LIG3P49916 HIGD1AP2-201ENST00000446367 280 ntBASIC4.44□□□□□ -1.7
LIG3P49916 TPT1P12-201ENST00000448968 492 ntBASIC4.44□□□□□ -1.7
LIG3P49916 NDUFS5P3-201ENST00000450668 321 ntBASIC4.44□□□□□ -1.7
LIG3P49916 snoU109.2-201ENST00000459316 135 ntBASIC4.44□□□□□ -1.7
LIG3P49916 RN7SL98P-201ENST00000462271 300 ntBASIC4.44□□□□□ -1.7
LIG3P49916 AP000873.1-201ENST00000463987 400 ntBASIC4.44□□□□□ -1.7
LIG3P49916 RPS23P7-201ENST00000466210 444 ntBASIC4.44□□□□□ -1.7
LIG3P49916 AC104564.1-201ENST00000493028 407 ntBASIC4.44□□□□□ -1.7
LIG3P49916 RPL30P5-201ENST00000494923 336 ntBASIC4.44□□□□□ -1.7
LIG3P49916 AC109927.1-202ENST00000511951 282 ntTSL 3 BASIC4.44□□□□□ -1.7
LIG3P49916 UQCRB-202ENST00000517523 515 ntTSL 2 BASIC4.44□□□□□ -1.7
LIG3P49916 IGHV3-76-201ENST00000522465 295 ntBASIC4.44□□□□□ -1.7
LIG3P49916 AC010186.2-204ENST00000537668 439 ntBASIC4.44□□□□□ -1.7
LIG3P49916 SARNP-203ENST00000552080 726 ntTSL 2 BASIC4.44□□□□□ -1.7
LIG3P49916 TMEM106C-220ENST00000552561 810 ntAPPRIS P1 TSL 1 (best) BASIC4.44□□□□□ -1.7
LIG3P49916 NUDT7-203ENST00000563839 316 ntTSL 3 BASIC4.44□□□□□ -1.7
LIG3P49916 PWRN1-209ENST00000568019 359 ntTSL 3 BASIC4.44□□□□□ -1.7
LIG3P49916 LINC01630-204ENST00000582689 539 ntTSL 4 BASIC4.44□□□□□ -1.7
LIG3P49916 RPS29P30-201ENST00000600975 111 ntBASIC4.44□□□□□ -1.7
LIG3P49916 AL390123.1-201ENST00000603216 237 ntBASIC4.44□□□□□ -1.7
LIG3P49916 MIR6798-201ENST00000612887 67 ntBASIC4.44□□□□□ -1.7
LIG3P49916 U4.7-201ENST00000638126 106 ntBASIC4.44□□□□□ -1.7
LIG3P49916 AC032011.1-201ENST00000611703 1549 ntBASIC4.44□□□□□ -1.7
LIG3P49916 SETDB2-202ENST00000317257 5619 ntAPPRIS ALT2 TSL 1 (best) BASIC4.44□□□□□ -1.7
LIG3P49916 LRIF1-203ENST00000494675 1912 ntAPPRIS ALT2 TSL 2 BASIC4.44□□□□□ -1.7
LIG3P49916 MBD5-202ENST00000407073 9512 ntTSL 1 (best) BASIC4.44□□□□□ -1.7
LIG3P49916 VPS13C-202ENST00000261517 13400 ntAPPRIS ALT2 TSL 1 (best) BASIC4.44□□□□□ -1.7
LIG3P49916 EYA4-202ENST00000355286 4317 ntAPPRIS ALT1 TSL 1 (best) BASIC4.43□□□□□ -1.7
LIG3P49916 HERC4-204ENST00000395198 4445 ntAPPRIS ALT1 TSL 1 (best) BASIC4.43□□□□□ -1.7
LIG3P49916 PATJ-202ENST00000316485 3657 ntTSL 5 BASIC4.43□□□□□ -1.7
LIG3P49916 ANKRD36C-202ENST00000456556 5428 ntAPPRIS P1 TSL 5 BASIC4.43□□□□□ -1.7
LIG3P49916 SNORD50.1-201ENST00000362987 71 ntBASIC4.43□□□□□ -1.7
LIG3P49916 U3.6-201ENST00000363622 211 ntBASIC4.43□□□□□ -1.7
LIG3P49916 Y_RNA.288-201ENST00000364854 92 ntBASIC4.43□□□□□ -1.7
LIG3P49916 Y_RNA.489-201ENST00000384410 101 ntBASIC4.43□□□□□ -1.7
LIG3P49916 MIR3065-201ENST00000390137 79 ntBASIC4.43□□□□□ -1.7
LIG3P49916 AC010745.2-201ENST00000420404 839 ntTSL 3 BASIC4.43□□□□□ -1.7
LIG3P49916 GAS5-208ENST00000425771 242 ntTSL 3 BASIC4.43□□□□□ -1.7
LIG3P49916 TAB3-AS2-201ENST00000445240 292 ntTSL 5 BASIC4.43□□□□□ -1.7
LIG3P49916 LINC01768-201ENST00000453347 476 ntTSL 3 BASIC4.43□□□□□ -1.7
LIG3P49916 AC018554.1-202ENST00000565133 444 ntTSL 3 BASIC4.43□□□□□ -1.7
LIG3P49916 AMZ2P1-203ENST00000565833 850 ntBASIC4.43□□□□□ -1.7
LIG3P49916 AC099793.1-201ENST00000567538 285 ntTSL 3 BASIC4.43□□□□□ -1.7
LIG3P49916 LINC00993-204ENST00000606476 500 ntTSL 5 BASIC4.43□□□□□ -1.7
LIG3P49916 MIR6891-201ENST00000618788 93 ntBASIC4.43□□□□□ -1.7
LIG3P49916 TMEM38B-201ENST00000374688 3956 ntTSL 2 BASIC4.43□□□□□ -1.7
LIG3P49916 OTUD6B-AS1-201ENST00000522817 4275 ntTSL 2 BASIC4.43□□□□□ -1.7
LIG3P49916 OR9H1P-201ENST00000446393 4888 ntAPPRIS P1 BASIC4.43□□□□□ -1.7
LIG3P49916 EFHC1-205ENST00000538167 5308 ntTSL 5 BASIC4.43□□□□□ -1.7
LIG3P49916 UTRN-204ENST00000367545 12339 ntAPPRIS P1 TSL 5 BASIC4.43□□□□□ -1.7
LIG3P49916 USP8P1-201ENST00000494673 3183 ntBASIC4.43□□□□□ -1.7
LIG3P49916 PARP8-211ENST00000505554 3825 ntTSL 5 BASIC4.42□□□□□ -1.7
LIG3P49916 TMEM67-202ENST00000409623 3255 ntTSL 2 BASIC4.42□□□□□ -1.7
LIG3P49916 DAZ4-206ENST00000449750 3271 ntTSL 5 BASIC4.42□□□□□ -1.7
LIG3P49916 SCAI-201ENST00000336505 12079 ntAPPRIS P1 TSL 1 (best) BASIC4.42□□□□□ -1.7
LIG3P49916 ADAM29-201ENST00000359240 3325 ntAPPRIS P1 TSL 2 BASIC4.42□□□□□ -1.7
LIG3P49916 RNU6-50P-201ENST00000362356 103 ntBASIC4.42□□□□□ -1.7
LIG3P49916 RNU6-78P-201ENST00000362897 107 ntBASIC4.42□□□□□ -1.7
LIG3P49916 RNA5SP167-201ENST00000365461 116 ntBASIC4.42□□□□□ -1.7
LIG3P49916 Y_RNA.461-201ENST00000384263 103 ntBASIC4.42□□□□□ -1.7
LIG3P49916 RPS29P13-201ENST00000402041 169 ntBASIC4.42□□□□□ -1.7
LIG3P49916 MTCYBP2-201ENST00000407745 171 ntBASIC4.42□□□□□ -1.7
LIG3P49916 RPS20P14-201ENST00000412545 360 ntBASIC4.42□□□□□ -1.7
LIG3P49916 RBMY1KP-201ENST00000423480 476 ntBASIC4.42□□□□□ -1.7
LIG3P49916 AL512844.2-201ENST00000433990 593 ntBASIC4.42□□□□□ -1.7
LIG3P49916 NDUFB4P6-201ENST00000436819 366 ntBASIC4.42□□□□□ -1.7
LIG3P49916 AC124916.1-201ENST00000444020 547 ntBASIC4.42□□□□□ -1.7
Retrieved 100 of 98,524 protein–RNA pairs in 114.3 ms