Protein–RNA interactions for Protein: P49711

CTCF, Transcriptional repressor CTCF, humanhuman

Predicted RBP Predictions only

Length 727 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CTCFP49711 RPL7P20-201ENST00000520308 745 ntBASIC3.31□□□□□ -1.88
CTCFP49711 AC090138.1-201ENST00000524493 578 ntTSL 4 BASIC3.31□□□□□ -1.88
CTCFP49711 AC078778.1-201ENST00000547177 735 ntTSL 3 BASIC3.31□□□□□ -1.88
CTCFP49711 SUB1P2-201ENST00000556401 297 ntBASIC3.31□□□□□ -1.88
CTCFP49711 AC004223.2-201ENST00000590309 544 ntBASIC3.31□□□□□ -1.88
CTCFP49711 AL591516.1-201ENST00000611326 274 ntBASIC3.31□□□□□ -1.88
CTCFP49711 AC093648.1-201ENST00000623546 606 ntBASIC3.31□□□□□ -1.88
CTCFP49711 ZBTB8OS-201ENST00000341885 312 ntTSL 1 (best) BASIC3.3□□□□□ -1.88
CTCFP49711 U3.6-201ENST00000363622 211 ntBASIC3.3□□□□□ -1.88
CTCFP49711 Y_RNA.245-201ENST00000364493 95 ntBASIC3.3□□□□□ -1.88
CTCFP49711 Y_RNA.296-201ENST00000364930 108 ntBASIC3.3□□□□□ -1.88
CTCFP49711 AL138827.1-201ENST00000402666 306 ntBASIC3.3□□□□□ -1.88
CTCFP49711 RN7SKP223-201ENST00000410582 62 ntBASIC3.3□□□□□ -1.88
CTCFP49711 RN7SKP58-201ENST00000411010 305 ntBASIC3.3□□□□□ -1.88
CTCFP49711 LINC00301-202ENST00000412599 772 ntTSL 1 (best) BASIC3.3□□□□□ -1.88
CTCFP49711 RPS12P24-201ENST00000412619 387 ntBASIC3.3□□□□□ -1.88
CTCFP49711 ATG3P1-201ENST00000419507 911 ntBASIC3.3□□□□□ -1.88
CTCFP49711 ABCC5-AS1-201ENST00000422946 469 ntTSL 2 BASIC3.3□□□□□ -1.88
CTCFP49711 AL353612.1-201ENST00000428769 465 ntTSL 3 BASIC3.3□□□□□ -1.88
CTCFP49711 LINC01807-201ENST00000432481 676 ntTSL 3 BASIC3.3□□□□□ -1.88
CTCFP49711 AL033504.1-204ENST00000434985 413 ntTSL 2 BASIC3.3□□□□□ -1.88
CTCFP49711 AL451074.3-201ENST00000437709 472 ntBASIC3.3□□□□□ -1.88
CTCFP49711 RPL21P2-201ENST00000440049 481 ntBASIC3.3□□□□□ -1.88
CTCFP49711 AC099566.1-201ENST00000442558 479 ntTSL 3 BASIC3.3□□□□□ -1.88
CTCFP49711 NIPA2P5-201ENST00000452282 464 ntBASIC3.3□□□□□ -1.88
CTCFP49711 RNU6-953P-201ENST00000459154 107 ntBASIC3.3□□□□□ -1.88
CTCFP49711 PLS1-AS1-201ENST00000485338 346 ntTSL 3 BASIC3.3□□□□□ -1.88
CTCFP49711 AC108078.2-201ENST00000510750 236 ntBASIC3.3□□□□□ -1.88
CTCFP49711 AC096725.1-201ENST00000514266 313 ntBASIC3.3□□□□□ -1.88
CTCFP49711 RNU6-1053P-201ENST00000515930 101 ntBASIC3.3□□□□□ -1.88
CTCFP49711 RNU6-677P-201ENST00000516914 101 ntBASIC3.3□□□□□ -1.88
CTCFP49711 AP000867.2-201ENST00000532468 320 ntBASIC3.3□□□□□ -1.88
CTCFP49711 NTS-203ENST00000551529 801 ntTSL 3 BASIC3.3□□□□□ -1.88
CTCFP49711 AL352955.1-201ENST00000555490 332 ntTSL 3 BASIC3.3□□□□□ -1.88
CTCFP49711 AC027176.1-201ENST00000560204 514 ntBASIC3.3□□□□□ -1.88
CTCFP49711 AC174048.1-201ENST00000603389 144 ntBASIC3.3□□□□□ -1.88
CTCFP49711 AL391646.1-201ENST00000603860 190 ntBASIC3.3□□□□□ -1.88
CTCFP49711 AC009161.2-201ENST00000624626 138 ntBASIC3.3□□□□□ -1.88
CTCFP49711 NEB-220ENST00000618972 26307 ntAPPRIS ALT2 TSL 5 BASIC3.3□□□□□ -1.88
CTCFP49711 MGAT4C-211ENST00000621808 2582 ntAPPRIS P1 TSL 1 (best) BASIC3.3□□□□□ -1.88
CTCFP49711 ZNF519P1-201ENST00000449011 1626 ntBASIC3.3□□□□□ -1.88
CTCFP49711 GTPBP8-205ENST00000473129 1518 ntTSL 2 BASIC3.29□□□□□ -1.88
CTCFP49711 MS4A14-202ENST00000395001 3401 ntTSL 5 BASIC3.29□□□□□ -1.88
CTCFP49711 Y_RNA.796-201ENST00000364268 102 ntBASIC3.29□□□□□ -1.88
CTCFP49711 Y_RNA.799-201ENST00000364992 102 ntBASIC3.29□□□□□ -1.88
CTCFP49711 RNU6-190P-201ENST00000384154 102 ntBASIC3.29□□□□□ -1.88
CTCFP49711 RNU6-140P-201ENST00000384566 108 ntBASIC3.29□□□□□ -1.88
CTCFP49711 OR5H8-201ENST00000394191 1045 ntAPPRIS P1 BASIC3.29□□□□□ -1.88
CTCFP49711 RPS27L-202ENST00000411926 528 ntTSL 3 BASIC3.29□□□□□ -1.88
CTCFP49711 ATP13A5-AS1-201ENST00000414634 476 ntTSL 3 BASIC3.29□□□□□ -1.88
CTCFP49711 AC073311.1-201ENST00000420146 505 ntTSL 5 BASIC3.29□□□□□ -1.88
CTCFP49711 AL109913.1-201ENST00000421173 514 ntBASIC3.29□□□□□ -1.88
CTCFP49711 ZNF863P-201ENST00000426746 417 ntBASIC3.29□□□□□ -1.88
CTCFP49711 MTCO2P19-201ENST00000427513 598 ntBASIC3.29□□□□□ -1.88
CTCFP49711 RAB6C-AS1-202ENST00000433431 123 ntBASIC3.29□□□□□ -1.88
CTCFP49711 LINC01069-201ENST00000452933 546 ntTSL 5 BASIC3.29□□□□□ -1.88
CTCFP49711 AL133481.3-201ENST00000456546 333 ntTSL 3 BASIC3.29□□□□□ -1.88
CTCFP49711 RPL39P36-201ENST00000490784 156 ntBASIC3.29□□□□□ -1.88
CTCFP49711 AC023194.1-201ENST00000493084 308 ntBASIC3.29□□□□□ -1.88
CTCFP49711 AC116562.3-201ENST00000506136 177 ntBASIC3.29□□□□□ -1.88
CTCFP49711 AC108729.3-201ENST00000513484 108 ntBASIC3.29□□□□□ -1.88
CTCFP49711 AC008700.1-202ENST00000513657 468 ntTSL 5 BASIC3.29□□□□□ -1.88
CTCFP49711 RNU6-56P-201ENST00000516986 93 ntBASIC3.29□□□□□ -1.88
CTCFP49711 FAM92A1P1-201ENST00000528023 890 ntBASIC3.29□□□□□ -1.88
CTCFP49711 AC068587.5-201ENST00000528506 175 ntBASIC3.29□□□□□ -1.88
CTCFP49711 RANP3-201ENST00000530970 276 ntBASIC3.29□□□□□ -1.88
CTCFP49711 AC133480.1-201ENST00000547563 381 ntTSL 3 BASIC3.29□□□□□ -1.88
CTCFP49711 Z84480.1-201ENST00000605131 311 ntBASIC3.29□□□□□ -1.88
CTCFP49711 AC022893.3-201ENST00000607665 437 ntBASIC3.29□□□□□ -1.88
CTCFP49711 AC004852.3-201ENST00000614131 326 ntBASIC3.29□□□□□ -1.88
CTCFP49711 AC130324.3-201ENST00000614165 542 ntBASIC3.29□□□□□ -1.88
CTCFP49711 CDKN2B-AS.1-201ENST00000617921 150 ntBASIC3.29□□□□□ -1.88
CTCFP49711 OR5AK4P-201ENST00000635912 903 ntBASIC3.29□□□□□ -1.88
CTCFP49711 AC108206.1-201ENST00000570186 4159 ntBASIC3.29□□□□□ -1.88
CTCFP49711 KERA-201ENST00000266719 2162 ntAPPRIS P1 TSL 1 (best) BASIC3.29□□□□□ -1.88
CTCFP49711 OR51A7-202ENST00000641490 2186 ntAPPRIS P1 BASIC3.29□□□□□ -1.88
CTCFP49711 ZNF85-203ENST00000345030 1689 ntAPPRIS ALT2 TSL 5 BASIC3.29□□□□□ -1.88
CTCFP49711 AL589740.1-207ENST00000607823 1962 ntTSL 5 BASIC3.29□□□□□ -1.88
CTCFP49711 SLITRK6-201ENST00000400286 4318 ntAPPRIS P1 TSL 1 (best) BASIC3.28□□□□□ -1.88
CTCFP49711 GPR183-201ENST00000376414 1700 ntAPPRIS P1 TSL 1 (best) BASIC3.28□□□□□ -1.88
CTCFP49711 AC073325.2-201ENST00000339545 159 ntBASIC3.28□□□□□ -1.88
CTCFP49711 RNU6-61P-201ENST00000365528 109 ntBASIC3.28□□□□□ -1.88
CTCFP49711 Y_RNA.534-201ENST00000384599 112 ntBASIC3.28□□□□□ -1.88
CTCFP49711 RNU6ATAC16P-201ENST00000408591 138 ntBASIC3.28□□□□□ -1.88
CTCFP49711 ELF3-AS1-201ENST00000415582 500 ntTSL 2 BASIC3.28□□□□□ -1.88
CTCFP49711 AC009963.1-201ENST00000417265 157 ntBASIC3.28□□□□□ -1.88
CTCFP49711 AC073464.1-201ENST00000429823 534 ntBASIC3.28□□□□□ -1.88
CTCFP49711 AL591212.2-201ENST00000433923 257 ntBASIC3.28□□□□□ -1.88
CTCFP49711 MTND4P25-201ENST00000441039 533 ntBASIC3.28□□□□□ -1.88
CTCFP49711 CECR9-201ENST00000453421 199 ntBASIC3.28□□□□□ -1.88
CTCFP49711 RPL12P25-201ENST00000455592 494 ntBASIC3.28□□□□□ -1.88
CTCFP49711 HMGN2P23-201ENST00000456759 269 ntBASIC3.28□□□□□ -1.88
CTCFP49711 MRPS17P3-201ENST00000465453 385 ntBASIC3.28□□□□□ -1.88
CTCFP49711 RNU6-720P-201ENST00000516363 108 ntBASIC3.28□□□□□ -1.88
CTCFP49711 SNORA31.21-201ENST00000517180 77 ntBASIC3.28□□□□□ -1.88
CTCFP49711 AC104211.1-202ENST00000521307 866 ntTSL 3 BASIC3.28□□□□□ -1.88
CTCFP49711 SPINK7-205ENST00000523535 299 ntTSL 2 BASIC3.28□□□□□ -1.88
CTCFP49711 MTCYBP20-201ENST00000524239 1129 ntBASIC3.28□□□□□ -1.88
CTCFP49711 AC007536.1-201ENST00000533382 349 ntBASIC3.28□□□□□ -1.88
CTCFP49711 G2E3-AS1-204ENST00000552511 402 ntTSL 2 BASIC3.28□□□□□ -1.88
Retrieved 100 of 98,524 protein–RNA pairs in 108.4 ms