Protein–RNA interactions for Protein: P41225

SOX3, Transcription factor SOX-3, humanhuman

Predictions only

Length 446 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX3P41225 LINC02541-201ENST00000427157 327 ntTSL 3 BASIC2.62□□□□□ -1.99
SOX3P41225 RPL36AP53-201ENST00000432891 316 ntBASIC2.62□□□□□ -1.99
SOX3P41225 AL596276.1-201ENST00000434465 418 ntBASIC2.62□□□□□ -1.99
SOX3P41225 AL122017.1-201ENST00000435858 784 ntTSL 2 BASIC2.62□□□□□ -1.99
SOX3P41225 RPL7P54-201ENST00000438336 674 ntBASIC2.62□□□□□ -1.99
SOX3P41225 AC105272.1-201ENST00000438604 198 ntBASIC2.62□□□□□ -1.99
SOX3P41225 AL137789.1-201ENST00000439443 682 ntTSL 3 BASIC2.62□□□□□ -1.99
SOX3P41225 AC093579.1-201ENST00000439455 352 ntTSL 2 BASIC2.62□□□□□ -1.99
SOX3P41225 AL138799.4-201ENST00000443939 643 ntTSL 3 BASIC2.62□□□□□ -1.99
SOX3P41225 MTND1P18-201ENST00000448191 573 ntBASIC2.62□□□□□ -1.99
SOX3P41225 FDX1P2-201ENST00000450769 375 ntBASIC2.62□□□□□ -1.99
SOX3P41225 NDUFAF4P4-201ENST00000454883 502 ntBASIC2.62□□□□□ -1.99
SOX3P41225 AL162395.1-201ENST00000457882 422 ntBASIC2.62□□□□□ -1.99
SOX3P41225 RNU7-63P-201ENST00000459054 62 ntBASIC2.62□□□□□ -1.99
SOX3P41225 snoU13.28-201ENST00000459235 104 ntBASIC2.62□□□□□ -1.99
SOX3P41225 NDUFA6-201ENST00000470753 475 ntTSL 2 BASIC2.62□□□□□ -1.99
SOX3P41225 AC083798.1-201ENST00000472671 131 ntBASIC2.62□□□□□ -1.99
SOX3P41225 LINC01323-201ENST00000486767 576 ntTSL 3 BASIC2.62□□□□□ -1.99
SOX3P41225 RPL36AP51-201ENST00000487216 318 ntBASIC2.62□□□□□ -1.99
SOX3P41225 AC026780.2-201ENST00000503489 730 ntTSL 5 BASIC2.62□□□□□ -1.99
SOX3P41225 AC092436.1-201ENST00000506450 503 ntBASIC2.62□□□□□ -1.99
SOX3P41225 SNORA40.12-201ENST00000516329 111 ntBASIC2.62□□□□□ -1.99
SOX3P41225 RN7SKP219-201ENST00000516825 296 ntBASIC2.62□□□□□ -1.99
SOX3P41225 RNA5SP503-201ENST00000517047 117 ntBASIC2.62□□□□□ -1.99
SOX3P41225 AC011257.1-201ENST00000519048 281 ntTSL 3 BASIC2.62□□□□□ -1.99
SOX3P41225 AP003122.3-201ENST00000526316 255 ntBASIC2.62□□□□□ -1.99
SOX3P41225 AC084851.1-201ENST00000529105 249 ntBASIC2.62□□□□□ -1.99
SOX3P41225 AP005435.4-201ENST00000529514 284 ntBASIC2.62□□□□□ -1.99
SOX3P41225 ELOCP31-201ENST00000540463 467 ntBASIC2.62□□□□□ -1.99
SOX3P41225 AC023796.2-201ENST00000545410 451 ntTSL 3 BASIC2.62□□□□□ -1.99
SOX3P41225 AL512360.1-201ENST00000555346 234 ntBASIC2.62□□□□□ -1.99
SOX3P41225 GTF3AP2-201ENST00000557014 266 ntBASIC2.62□□□□□ -1.99
SOX3P41225 AC020661.3-201ENST00000558101 414 ntTSL 3 BASIC2.62□□□□□ -1.99
SOX3P41225 AC090607.4-201ENST00000558192 369 ntTSL 3 BASIC2.62□□□□□ -1.99
SOX3P41225 HMGB1P33-201ENST00000563485 527 ntBASIC2.62□□□□□ -1.99
SOX3P41225 AC044798.1-201ENST00000565146 418 ntTSL 5 BASIC2.62□□□□□ -1.99
SOX3P41225 AC025917.1-202ENST00000566344 635 ntTSL 5 BASIC2.62□□□□□ -1.99
SOX3P41225 AC025678.1-201ENST00000567861 338 ntBASIC2.62□□□□□ -1.99
SOX3P41225 AC010653.1-201ENST00000571108 881 ntBASIC2.62□□□□□ -1.99
SOX3P41225 MIR4703-201ENST00000577728 79 ntBASIC2.62□□□□□ -1.99
SOX3P41225 AC011933.3-201ENST00000578226 372 ntTSL 1 (best) BASIC2.62□□□□□ -1.99
SOX3P41225 MIR1273C-201ENST00000578669 77 ntBASIC2.62□□□□□ -1.99
SOX3P41225 AC015813.2-201ENST00000578794 711 ntAPPRIS P1 TSL 3 BASIC2.62□□□□□ -1.99
SOX3P41225 MTATP6P3-201ENST00000581686 676 ntBASIC2.62□□□□□ -1.99
SOX3P41225 AP003465.2-201ENST00000602571 373 ntBASIC2.62□□□□□ -1.99
SOX3P41225 DUSP12P1-201ENST00000612874 516 ntBASIC2.62□□□□□ -1.99
SOX3P41225 SCARNA15.3-201ENST00000626315 122 ntBASIC2.62□□□□□ -1.99
SOX3P41225 SCARNA4.1-201ENST00000628597 123 ntBASIC2.62□□□□□ -1.99
SOX3P41225 AL512643.1-201ENST00000635735 524 ntBASIC2.62□□□□□ -1.99
SOX3P41225 U2.21-201ENST00000637295 81 ntBASIC2.62□□□□□ -1.99
SOX3P41225 ZMYM2-203ENST00000382874 10139 ntAPPRIS P1 TSL 1 (best) BASIC2.62□□□□□ -1.99
SOX3P41225 OR9G4-203ENST00000641581 2603 ntAPPRIS P1 BASIC2.62□□□□□ -1.99
SOX3P41225 LIPI-203ENST00000536861 1529 ntAPPRIS ALT2 TSL 1 (best) BASIC2.62□□□□□ -1.99
SOX3P41225 AC233263.6-201ENST00000631132 1963 ntBASIC2.61□□□□□ -1.99
SOX3P41225 HSPA4L-202ENST00000505726 2639 ntTSL 2 BASIC2.61□□□□□ -1.99
SOX3P41225 LTN1-201ENST00000361371 7685 ntAPPRIS P1 TSL 1 (best) BASIC2.61□□□□□ -1.99
SOX3P41225 HTR2B-201ENST00000258400 2246 ntAPPRIS P1 TSL 1 (best) BASIC2.61□□□□□ -1.99
SOX3P41225 ATF2-204ENST00000409437 3697 ntTSL 5 BASIC2.61□□□□□ -1.99
SOX3P41225 AC006020.1-201ENST00000420179 1854 ntBASIC2.61□□□□□ -1.99
SOX3P41225 RNU6-1287P-201ENST00000362914 107 ntBASIC2.61□□□□□ -1.99
SOX3P41225 SNORA14A-201ENST00000364773 135 ntBASIC2.61□□□□□ -1.99
SOX3P41225 Y_RNA.381-201ENST00000365666 102 ntBASIC2.61□□□□□ -1.99
SOX3P41225 U8.9-201ENST00000365667 134 ntBASIC2.61□□□□□ -1.99
SOX3P41225 RNU6-517P-201ENST00000384362 110 ntBASIC2.61□□□□□ -1.99
SOX3P41225 RNU6-1060P-201ENST00000384664 107 ntBASIC2.61□□□□□ -1.99
SOX3P41225 TRAJ59-201ENST00000390480 54 ntAPPRIS P1 BASIC2.61□□□□□ -1.99
SOX3P41225 RNU6-780P-201ENST00000391030 104 ntBASIC2.61□□□□□ -1.99
SOX3P41225 RNA5SP252-201ENST00000391131 119 ntBASIC2.61□□□□□ -1.99
SOX3P41225 CISD1P1-201ENST00000393907 327 ntBASIC2.61□□□□□ -1.99
SOX3P41225 MIR888-201ENST00000401186 77 ntBASIC2.61□□□□□ -1.99
SOX3P41225 AL591416.1-201ENST00000404015 867 ntBASIC2.61□□□□□ -1.99
SOX3P41225 PPP3R1-202ENST00000409377 684 ntTSL 3 BASIC2.61□□□□□ -1.99
SOX3P41225 RNU2-29P-201ENST00000410423 189 ntBASIC2.61□□□□□ -1.99
SOX3P41225 AL592148.1-201ENST00000413568 445 ntBASIC2.61□□□□□ -1.99
SOX3P41225 OR6C66P-201ENST00000414917 930 ntBASIC2.61□□□□□ -1.99
SOX3P41225 AL138737.1-202ENST00000418834 876 ntTSL 3 BASIC2.61□□□□□ -1.99
SOX3P41225 HSPE1P1-201ENST00000421494 318 ntBASIC2.61□□□□□ -1.99
SOX3P41225 LINC01707-201ENST00000425517 627 ntTSL 3 BASIC2.61□□□□□ -1.99
SOX3P41225 AC087499.2-201ENST00000432861 149 ntBASIC2.61□□□□□ -1.99
SOX3P41225 MTND1P4-201ENST00000435196 415 ntBASIC2.61□□□□□ -1.99
SOX3P41225 AL590999.1-206ENST00000437947 436 ntTSL 3 BASIC2.61□□□□□ -1.99
SOX3P41225 AL714022.1-201ENST00000439897 151 ntBASIC2.61□□□□□ -1.99
SOX3P41225 AC016691.1-201ENST00000441321 413 ntBASIC2.61□□□□□ -1.99
SOX3P41225 AC007879.3-202ENST00000448786 823 ntTSL 1 (best) BASIC2.61□□□□□ -1.99
SOX3P41225 AL118520.1-201ENST00000450770 291 ntBASIC2.61□□□□□ -1.99
SOX3P41225 LINC00395-202ENST00000451570 415 ntTSL 3 BASIC2.61□□□□□ -1.99
SOX3P41225 AC126182.1-201ENST00000478134 357 ntBASIC2.61□□□□□ -1.99
SOX3P41225 AL163973.1-201ENST00000484753 577 ntBASIC2.61□□□□□ -1.99
SOX3P41225 AC110767.1-201ENST00000508374 239 ntTSL 3 BASIC2.61□□□□□ -1.99
SOX3P41225 SNORD59.2-201ENST00000516873 68 ntBASIC2.61□□□□□ -1.99
SOX3P41225 HTN3-202ENST00000526767 578 ntAPPRIS P2 TSL 1 (best) BASIC2.61□□□□□ -1.99
SOX3P41225 AP000867.2-201ENST00000532468 320 ntBASIC2.61□□□□□ -1.99
SOX3P41225 AC078778.1-201ENST00000547177 735 ntTSL 3 BASIC2.61□□□□□ -1.99
SOX3P41225 AC025575.1-201ENST00000548497 544 ntTSL 4 BASIC2.61□□□□□ -1.99
SOX3P41225 AC136619.2-201ENST00000563361 631 ntBASIC2.61□□□□□ -1.99
SOX3P41225 AC087463.1-201ENST00000568541 556 ntTSL 2 BASIC2.61□□□□□ -1.99
SOX3P41225 MSMB-202ENST00000582163 488 ntAPPRIS P1 TSL 1 (best) BASIC2.61□□□□□ -1.99
SOX3P41225 AC022960.1-201ENST00000582269 348 ntTSL 3 BASIC2.61□□□□□ -1.99
SOX3P41225 TTN-AS1-212ENST00000582847 1036 ntTSL 5 BASIC2.61□□□□□ -1.99
SOX3P41225 AC087749.2-201ENST00000583910 352 ntTSL 5 BASIC2.61□□□□□ -1.99
Retrieved 100 of 98,524 protein–RNA pairs in 93.7 ms