Protein–RNA interactions for Protein: P17096

HMGA1, High mobility group protein HMG-I/HMG-Y, humanhuman

Known RBP Predictions only

Length 107 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1P17096 MTND2P41-201ENST00000637599 773 ntBASIC0.44□□□□□ -2.34
HMGA1P17096 RNU1-36P-201ENST00000365130 165 ntBASIC0.43□□□□□ -2.34
HMGA1P17096 MIR193B-201ENST00000384907 83 ntBASIC0.43□□□□□ -2.34
HMGA1P17096 RPL23AP32-201ENST00000395315 459 ntBASIC0.43□□□□□ -2.34
HMGA1P17096 RNU2-36P-201ENST00000410361 191 ntBASIC0.43□□□□□ -2.34
HMGA1P17096 U51244.1-201ENST00000423120 374 ntTSL 3 BASIC0.43□□□□□ -2.34
HMGA1P17096 UBE2V1P4-201ENST00000425374 344 ntBASIC0.43□□□□□ -2.34
HMGA1P17096 NDUFA5P10-201ENST00000432147 357 ntBASIC0.43□□□□□ -2.34
HMGA1P17096 LINC01680-201ENST00000434983 299 ntTSL 2 BASIC0.43□□□□□ -2.34
HMGA1P17096 RAP1BP2-201ENST00000478270 544 ntBASIC0.43□□□□□ -2.34
HMGA1P17096 AP001025.1-201ENST00000486139 332 ntBASIC0.43□□□□□ -2.34
HMGA1P17096 TNFAIP8-205ENST00000504642 711 ntTSL 3 BASIC0.43□□□□□ -2.34
HMGA1P17096 RNU4-57P-201ENST00000515980 135 ntBASIC0.43□□□□□ -2.34
HMGA1P17096 AC087854.1-201ENST00000519706 414 ntBASIC0.43□□□□□ -2.34
HMGA1P17096 LINC01495-202ENST00000534135 343 ntTSL 2 BASIC0.43□□□□□ -2.34
HMGA1P17096 AC005832.3-201ENST00000537929 631 ntBASIC0.43□□□□□ -2.34
HMGA1P17096 AC092470.1-201ENST00000546187 132 ntBASIC0.43□□□□□ -2.34
HMGA1P17096 AC125611.1-201ENST00000549563 229 ntBASIC0.43□□□□□ -2.34
HMGA1P17096 AC026271.5-201ENST00000577873 130 ntBASIC0.43□□□□□ -2.34
HMGA1P17096 MTND4LP5-201ENST00000605152 292 ntBASIC0.43□□□□□ -2.34
HMGA1P17096 AL021879.1-201ENST00000611756 288 ntBASIC0.43□□□□□ -2.34
HMGA1P17096 MIR8074-201ENST00000615081 81 ntBASIC0.43□□□□□ -2.34
HMGA1P17096 AL138955.1-201ENST00000622881 1040 ntBASIC0.43□□□□□ -2.34
HMGA1P17096 AC018692.1-202ENST00000623559 676 ntTSL 5 BASIC0.43□□□□□ -2.34
HMGA1P17096 RBBP8P1-201ENST00000449447 1844 ntBASIC0.43□□□□□ -2.34
HMGA1P17096 ZNF680P1-201ENST00000436625 1469 ntBASIC0.42□□□□□ -2.34
HMGA1P17096 VTRNA1-3-201ENST00000365645 89 ntBASIC0.42□□□□□ -2.34
HMGA1P17096 TRAJ39-201ENST00000390498 63 ntAPPRIS P1 BASIC0.42□□□□□ -2.34
HMGA1P17096 DSTNP4-201ENST00000399472 474 ntBASIC0.42□□□□□ -2.34
HMGA1P17096 AC007742.1-201ENST00000425789 329 ntBASIC0.42□□□□□ -2.34
HMGA1P17096 AL512844.2-201ENST00000433990 593 ntBASIC0.42□□□□□ -2.34
HMGA1P17096 ELOCP26-201ENST00000436067 329 ntBASIC0.42□□□□□ -2.34
HMGA1P17096 AC098591.2-201ENST00000510152 315 ntBASIC0.42□□□□□ -2.34
HMGA1P17096 AP003355.1-201ENST00000518956 587 ntBASIC0.42□□□□□ -2.34
HMGA1P17096 HAUS1P3-201ENST00000523909 662 ntBASIC0.42□□□□□ -2.34
HMGA1P17096 AP003072.2-201ENST00000527756 676 ntBASIC0.42□□□□□ -2.34
HMGA1P17096 AC092747.1-202ENST00000540595 380 ntTSL 5 BASIC0.42□□□□□ -2.34
HMGA1P17096 AC008088.1-201ENST00000580993 280 ntBASIC0.42□□□□□ -2.34
HMGA1P17096 AC021171.1-201ENST00000603137 706 ntBASIC0.42□□□□□ -2.34
HMGA1P17096 AC068787.1-201ENST00000623908 691 ntBASIC0.42□□□□□ -2.34
HMGA1P17096 PRPSAP2-229ENST00000628609 192 ntTSL 5 BASIC0.42□□□□□ -2.34
HMGA1P17096 LRRD1-203ENST00000430130 2661 ntAPPRIS P1 TSL 5 BASIC0.42□□□□□ -2.34
HMGA1P17096 MTND4P16-201ENST00000466108 1367 ntBASIC0.42□□□□□ -2.34
HMGA1P17096 OR13C4-201ENST00000277216 957 ntAPPRIS P1 BASIC0.41□□□□□ -2.34
HMGA1P17096 OR5T3-201ENST00000303059 1023 ntBASIC0.41□□□□□ -2.34
HMGA1P17096 USP9YP26-201ENST00000421008 661 ntBASIC0.41□□□□□ -2.34
HMGA1P17096 RPS27P16-201ENST00000425758 201 ntBASIC0.41□□□□□ -2.34
HMGA1P17096 USP9YP18-201ENST00000425912 695 ntBASIC0.41□□□□□ -2.34
HMGA1P17096 USP9YP24-201ENST00000434374 697 ntBASIC0.41□□□□□ -2.34
HMGA1P17096 RPS15AP5-201ENST00000436276 388 ntBASIC0.41□□□□□ -2.34
HMGA1P17096 USP9YP17-201ENST00000444617 696 ntBASIC0.41□□□□□ -2.34
HMGA1P17096 AC104164.3-201ENST00000467363 1258 ntBASIC0.41□□□□□ -2.34
HMGA1P17096 AC134050.1-201ENST00000495088 933 ntBASIC0.41□□□□□ -2.34
HMGA1P17096 AC145146.1-201ENST00000496370 254 ntBASIC0.41□□□□□ -2.34
HMGA1P17096 AC034223.1-201ENST00000511054 599 ntTSL 3 BASIC0.41□□□□□ -2.34
HMGA1P17096 AL137804.1-201ENST00000528872 576 ntTSL 3 BASIC0.41□□□□□ -2.34
HMGA1P17096 SNHG1-210ENST00000539303 240 ntTSL 3 BASIC0.41□□□□□ -2.34
HMGA1P17096 AL391261.3-201ENST00000557194 520 ntBASIC0.41□□□□□ -2.34
HMGA1P17096 AC073544.2-201ENST00000601155 540 ntBASIC0.41□□□□□ -2.34
HMGA1P17096 AC009974.1-201ENST00000608881 455 ntBASIC0.41□□□□□ -2.34
HMGA1P17096 AC008498.1-201ENST00000613012 531 ntBASIC0.41□□□□□ -2.34
HMGA1P17096 AC090116.1-201ENST00000615679 446 ntBASIC0.41□□□□□ -2.34
HMGA1P17096 AP003481.1-201ENST00000637808 351 ntTSL 5 BASIC0.41□□□□□ -2.34
HMGA1P17096 DNAH14-203ENST00000366848 929 ntTSL 1 (best) BASIC0.4□□□□□ -2.35
HMGA1P17096 RNU6-750P-201ENST00000390946 107 ntBASIC0.4□□□□□ -2.35
HMGA1P17096 AL117342.1-201ENST00000404861 406 ntBASIC0.4□□□□□ -2.35
HMGA1P17096 RNA5SP511-201ENST00000410487 115 ntBASIC0.4□□□□□ -2.35
HMGA1P17096 RNU2-32P-201ENST00000411193 191 ntBASIC0.4□□□□□ -2.35
HMGA1P17096 USP9YP33-201ENST00000412220 421 ntBASIC0.4□□□□□ -2.35
HMGA1P17096 AC096649.2-201ENST00000416186 393 ntBASIC0.4□□□□□ -2.35
HMGA1P17096 PNRC2P1-201ENST00000423940 420 ntBASIC0.4□□□□□ -2.35
HMGA1P17096 SNRPEP7-201ENST00000438350 220 ntBASIC0.4□□□□□ -2.35
HMGA1P17096 AP002512.3-201ENST00000440231 985 ntAPPRIS P1 BASIC0.4□□□□□ -2.35
HMGA1P17096 AL592309.2-201ENST00000444647 607 ntTSL 5 BASIC0.4□□□□□ -2.35
HMGA1P17096 PGBD4P5-201ENST00000445958 426 ntBASIC0.4□□□□□ -2.35
HMGA1P17096 AC107463.1-203ENST00000509713 284 ntTSL 5 BASIC0.4□□□□□ -2.35
HMGA1P17096 AL353699.1-201ENST00000529078 365 ntTSL 3 BASIC0.4□□□□□ -2.35
HMGA1P17096 AC012378.1-201ENST00000561155 364 ntTSL 3 BASIC0.4□□□□□ -2.35
HMGA1P17096 LINC00557-201ENST00000563184 1279 ntBASIC0.4□□□□□ -2.35
HMGA1P17096 MIR3921-201ENST00000577308 85 ntBASIC0.4□□□□□ -2.35
HMGA1P17096 MIR1273G-201ENST00000577677 100 ntBASIC0.4□□□□□ -2.35
HMGA1P17096 VN1R82P-201ENST00000601481 356 ntBASIC0.4□□□□□ -2.35
HMGA1P17096 AC134026.1-201ENST00000623249 2239 ntBASIC0.4□□□□□ -2.35
HMGA1P17096 CXADR-202ENST00000356275 270 ntTSL 1 (best) BASIC0.39□□□□□ -2.35
HMGA1P17096 SNORA50A-201ENST00000384225 134 ntBASIC0.39□□□□□ -2.35
HMGA1P17096 FTH1P15-201ENST00000406984 280 ntBASIC0.39□□□□□ -2.35
HMGA1P17096 AL157786.1-206ENST00000424422 551 ntTSL 3 BASIC0.39□□□□□ -2.35
HMGA1P17096 ZNF863P-201ENST00000426746 417 ntBASIC0.39□□□□□ -2.35
HMGA1P17096 AL035410.1-201ENST00000427409 427 ntBASIC0.39□□□□□ -2.35
HMGA1P17096 ZNF965P-201ENST00000432501 817 ntBASIC0.39□□□□□ -2.35
HMGA1P17096 MTCO2P20-201ENST00000437339 673 ntBASIC0.39□□□□□ -2.35
HMGA1P17096 AL035666.1-201ENST00000446195 348 ntBASIC0.39□□□□□ -2.35
HMGA1P17096 MGAT4D-203ENST00000511113 1125 ntAPPRIS P2 TSL 5 BASIC0.39□□□□□ -2.35
HMGA1P17096 LINC02144-201ENST00000511417 592 ntTSL 4 BASIC0.39□□□□□ -2.35
HMGA1P17096 AC093766.1-202ENST00000513400 718 ntTSL 3 BASIC0.39□□□□□ -2.35
HMGA1P17096 RNU6-1282P-201ENST00000516735 96 ntBASIC0.39□□□□□ -2.35
HMGA1P17096 AC009930.1-201ENST00000522330 191 ntTSL 5 BASIC0.39□□□□□ -2.35
HMGA1P17096 AC090124.2-201ENST00000527727 563 ntTSL 4 BASIC0.39□□□□□ -2.35
HMGA1P17096 VBP1-203ENST00000535916 944 ntTSL 2 BASIC0.39□□□□□ -2.35
HMGA1P17096 AC002400.1-201ENST00000569310 726 ntBASIC0.39□□□□□ -2.35
Retrieved 100 of 98,524 protein–RNA pairs in 105.4 ms