Protein–RNA interactions for Protein: P12109

COL6A1, Collagen alpha-1(VI) chain, humanhuman

Predictions only

Length 1,028 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A1P12109 FASTKD1-205ENST00000453929 2791 ntTSL 2 BASIC4.21□□□□□ -1.73
COL6A1P12109 NCAM2-201ENST00000284894 4699 ntAPPRIS ALT2 TSL 5 BASIC4.21□□□□□ -1.74
COL6A1P12109 Y_RNA.176-201ENST00000363815 109 ntBASIC4.21□□□□□ -1.74
COL6A1P12109 AKAP14-204ENST00000371431 977 ntAPPRIS P3 TSL 1 (best) BASIC4.21□□□□□ -1.74
COL6A1P12109 RNU2-43P-201ENST00000410306 190 ntBASIC4.21□□□□□ -1.74
COL6A1P12109 RNU6-1050P-201ENST00000410388 107 ntBASIC4.21□□□□□ -1.74
COL6A1P12109 RPL27AP8-201ENST00000424277 446 ntBASIC4.21□□□□□ -1.74
COL6A1P12109 AL022396.1-201ENST00000427011 386 ntTSL 3 BASIC4.21□□□□□ -1.74
COL6A1P12109 PLCE1-AS2-203ENST00000433038 396 ntTSL 2 BASIC4.21□□□□□ -1.74
COL6A1P12109 HMGB1P37-201ENST00000439613 609 ntBASIC4.21□□□□□ -1.74
COL6A1P12109 AL591501.1-201ENST00000439992 495 ntTSL 5 BASIC4.21□□□□□ -1.74
COL6A1P12109 RBMY2UP-201ENST00000453474 324 ntBASIC4.21□□□□□ -1.74
COL6A1P12109 RPL12P25-201ENST00000455592 494 ntBASIC4.21□□□□□ -1.74
COL6A1P12109 MTATP8P1-201ENST00000467115 207 ntBASIC4.21□□□□□ -1.74
COL6A1P12109 AC104472.2-201ENST00000469035 601 ntBASIC4.21□□□□□ -1.74
COL6A1P12109 AC096711.1-201ENST00000510967 347 ntTSL 5 BASIC4.21□□□□□ -1.74
COL6A1P12109 RNU2-69P-201ENST00000516061 100 ntBASIC4.21□□□□□ -1.74
COL6A1P12109 RNU6-677P-201ENST00000516914 101 ntBASIC4.21□□□□□ -1.74
COL6A1P12109 RNU6-794P-201ENST00000517261 64 ntBASIC4.21□□□□□ -1.74
COL6A1P12109 IGKV2-38-201ENST00000517443 247 ntBASIC4.21□□□□□ -1.74
COL6A1P12109 AL161670.1-201ENST00000554348 137 ntBASIC4.21□□□□□ -1.74
COL6A1P12109 AC098617.1-215ENST00000594798 1152 ntTSL 5 BASIC4.21□□□□□ -1.74
COL6A1P12109 BDH2P1-201ENST00000602288 736 ntBASIC4.21□□□□□ -1.74
COL6A1P12109 AL355598.1-201ENST00000604169 202 ntBASIC4.21□□□□□ -1.74
COL6A1P12109 AC007485.1-201ENST00000616755 206 ntBASIC4.21□□□□□ -1.74
COL6A1P12109 AL162373.1-201ENST00000620433 407 ntBASIC4.21□□□□□ -1.74
COL6A1P12109 AC006111.3-201ENST00000622137 383 ntBASIC4.21□□□□□ -1.74
COL6A1P12109 AC068631.1-219ENST00000625826 668 ntTSL 5 BASIC4.21□□□□□ -1.74
COL6A1P12109 CCDC82-202ENST00000423339 1878 ntAPPRIS P2 TSL 1 (best) BASIC4.21□□□□□ -1.74
COL6A1P12109 DMD-207ENST00000378677 13932 ntAPPRIS ALT2 TSL 5 BASIC4.21□□□□□ -1.74
COL6A1P12109 SLITRK4-203ENST00000596188 8545 ntAPPRIS P1 TSL 1 (best) BASIC4.21□□□□□ -1.74
COL6A1P12109 SELENOI-201ENST00000260585 8101 ntAPPRIS P2 TSL 1 (best) BASIC4.21□□□□□ -1.74
COL6A1P12109 PANK1-202ENST00000322191 2513 ntTSL 1 (best) BASIC4.21□□□□□ -1.74
COL6A1P12109 PHEX-201ENST00000379374 6172 ntAPPRIS P1 TSL 1 (best) BASIC4.21□□□□□ -1.74
COL6A1P12109 CBLL1-201ENST00000222597 2003 ntAPPRIS ALT1 TSL 1 (best) BASIC4.21□□□□□ -1.74
COL6A1P12109 MTND5P30-201ENST00000452896 1731 ntBASIC4.21□□□□□ -1.74
COL6A1P12109 METTL18-201ENST00000303469 1426 ntAPPRIS P1 TSL 1 (best) BASIC4.21□□□□□ -1.74
COL6A1P12109 RBM39-201ENST00000253363 2488 ntAPPRIS P4 TSL 1 (best) BASIC4.2□□□□□ -1.74
COL6A1P12109 AL050331.3-201ENST00000448740 2081 ntTSL 2 BASIC4.2□□□□□ -1.74
COL6A1P12109 RNU1-108P-201ENST00000362556 161 ntBASIC4.2□□□□□ -1.74
COL6A1P12109 Y_RNA.80-201ENST00000362996 102 ntBASIC4.2□□□□□ -1.74
COL6A1P12109 RNU6-702P-201ENST00000364982 107 ntBASIC4.2□□□□□ -1.74
COL6A1P12109 RNU6-1318P-201ENST00000365389 103 ntBASIC4.2□□□□□ -1.74
COL6A1P12109 LZIC-201ENST00000377213 945 ntAPPRIS P1 TSL 1 (best) BASIC4.2□□□□□ -1.74
COL6A1P12109 Y_RNA.500-201ENST00000384466 111 ntBASIC4.2□□□□□ -1.74
COL6A1P12109 Y_RNA.557-201ENST00000384680 107 ntBASIC4.2□□□□□ -1.74
COL6A1P12109 RNU6-293P-201ENST00000411259 106 ntBASIC4.2□□□□□ -1.74
COL6A1P12109 NEFMP1-201ENST00000443423 1006 ntBASIC4.2□□□□□ -1.74
COL6A1P12109 RANP8-201ENST00000444720 713 ntBASIC4.2□□□□□ -1.74
COL6A1P12109 AL354949.1-201ENST00000446438 170 ntTSL 2 BASIC4.2□□□□□ -1.74
COL6A1P12109 MRPS35P2-201ENST00000508242 191 ntBASIC4.2□□□□□ -1.74
COL6A1P12109 PPBPP1-201ENST00000510807 373 ntBASIC4.2□□□□□ -1.74
COL6A1P12109 PIGY-201ENST00000527353 217 ntAPPRIS P1 BASIC4.2□□□□□ -1.74
COL6A1P12109 AC074052.2-201ENST00000562516 214 ntTSL 3 BASIC4.2□□□□□ -1.74
COL6A1P12109 AC009145.1-201ENST00000563230 433 ntTSL 3 BASIC4.2□□□□□ -1.74
COL6A1P12109 MIR3124-201ENST00000582636 67 ntBASIC4.2□□□□□ -1.74
COL6A1P12109 AC104763.2-201ENST00000604179 382 ntBASIC4.2□□□□□ -1.74
COL6A1P12109 AC018462.2-201ENST00000605375 395 ntBASIC4.2□□□□□ -1.74
COL6A1P12109 ESRRAP2-204ENST00000606337 280 ntTSL 5 BASIC4.2□□□□□ -1.74
COL6A1P12109 AL353748.2-201ENST00000622148 471 ntBASIC4.2□□□□□ -1.74
COL6A1P12109 OR6A2-202ENST00000641196 4295 ntAPPRIS P1 BASIC4.2□□□□□ -1.74
COL6A1P12109 NDUFAF4-201ENST00000316149 2399 ntAPPRIS P1 TSL 1 (best) BASIC4.2□□□□□ -1.74
COL6A1P12109 AL035425.3-201ENST00000564206 4996 ntBASIC4.2□□□□□ -1.74
COL6A1P12109 AKT3-201ENST00000263826 7081 ntAPPRIS P1 TSL 1 (best) BASIC4.2□□□□□ -1.74
COL6A1P12109 OR10J1-203ENST00000642080 3503 ntAPPRIS P1 BASIC4.2□□□□□ -1.74
COL6A1P12109 CUL4B-202ENST00000371322 4902 ntAPPRIS P1 TSL 1 (best) BASIC4.19□□□□□ -1.74
COL6A1P12109 FKTN-209ENST00000602661 2576 ntAPPRIS P1 TSL 1 (best) BASIC4.19□□□□□ -1.74
COL6A1P12109 SLC27A2-203ENST00000544960 2025 ntTSL 2 BASIC4.19□□□□□ -1.74
COL6A1P12109 C2orf16-202ENST00000447166 16401 ntAPPRIS ALT2 TSL 3 BASIC4.19□□□□□ -1.74
COL6A1P12109 D21S2088E-201ENST00000262354 1725 ntTSL 1 (best) BASIC4.19□□□□□ -1.74
COL6A1P12109 MIPOL1-206ENST00000545536 2073 ntTSL 5 BASIC4.19□□□□□ -1.74
COL6A1P12109 ZNF883-201ENST00000619044 2051 ntAPPRIS P1 TSL 5 BASIC4.19□□□□□ -1.74
COL6A1P12109 Y_RNA.47-201ENST00000362697 108 ntBASIC4.19□□□□□ -1.74
COL6A1P12109 RNU6-490P-201ENST00000362985 107 ntBASIC4.19□□□□□ -1.74
COL6A1P12109 Y_RNA.193-201ENST00000363979 102 ntBASIC4.19□□□□□ -1.74
COL6A1P12109 SNORA23-201ENST00000365128 182 ntBASIC4.19□□□□□ -1.74
COL6A1P12109 RNU6-214P-201ENST00000384130 107 ntBASIC4.19□□□□□ -1.74
COL6A1P12109 Y_RNA.527-201ENST00000384573 102 ntBASIC4.19□□□□□ -1.74
COL6A1P12109 AC110754.1-201ENST00000399740 601 ntBASIC4.19□□□□□ -1.74
COL6A1P12109 RNU6ATAC16P-201ENST00000408591 138 ntBASIC4.19□□□□□ -1.74
COL6A1P12109 MIR1289-1-201ENST00000408836 144 ntBASIC4.19□□□□□ -1.74
COL6A1P12109 Y_RNA.594-201ENST00000410373 140 ntBASIC4.19□□□□□ -1.74
COL6A1P12109 MRLN-201ENST00000414264 422 ntAPPRIS P2 TSL 1 (best) BASIC4.19□□□□□ -1.74
COL6A1P12109 EIF4EP1-201ENST00000422311 642 ntBASIC4.19□□□□□ -1.74
COL6A1P12109 TMEM167AP1-201ENST00000423409 219 ntBASIC4.19□□□□□ -1.74
COL6A1P12109 AC005300.1-201ENST00000428401 373 ntBASIC4.19□□□□□ -1.74
COL6A1P12109 AC096644.2-201ENST00000429278 159 ntBASIC4.19□□□□□ -1.74
COL6A1P12109 DCLRE1CP1-201ENST00000454630 470 ntBASIC4.19□□□□□ -1.74
COL6A1P12109 AC128713.1-201ENST00000471495 306 ntBASIC4.19□□□□□ -1.74
COL6A1P12109 AC121154.1-201ENST00000507299 430 ntTSL 3 BASIC4.19□□□□□ -1.74
COL6A1P12109 AC026782.1-201ENST00000512952 449 ntBASIC4.19□□□□□ -1.74
COL6A1P12109 AC104136.1-201ENST00000512969 394 ntBASIC4.19□□□□□ -1.74
COL6A1P12109 Y_RNA.689-201ENST00000516589 107 ntBASIC4.19□□□□□ -1.74
COL6A1P12109 RNU6-307P-201ENST00000516743 106 ntBASIC4.19□□□□□ -1.74
COL6A1P12109 NDST1-AS1-201ENST00000519040 368 ntTSL 2 BASIC4.19□□□□□ -1.74
COL6A1P12109 AC087854.1-201ENST00000519706 414 ntBASIC4.19□□□□□ -1.74
COL6A1P12109 AC026371.1-201ENST00000551867 419 ntBASIC4.19□□□□□ -1.74
COL6A1P12109 AC092718.6-202ENST00000563072 408 ntTSL 2 BASIC4.19□□□□□ -1.74
COL6A1P12109 AL137843.1-201ENST00000605078 385 ntBASIC4.19□□□□□ -1.74
COL6A1P12109 DAOA-AS1_2.1-201ENST00000614829 187 ntBASIC4.19□□□□□ -1.74
Retrieved 100 of 98,524 protein–RNA pairs in 218.7 ms