Protein–RNA interactions for Protein: O95639

CPSF4, Cleavage and polyadenylation specificity factor subunit 4, humanhuman

Known RBP Predictions only

Length 269 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF4O95639 RNU6-1140P-201ENST00000410517 106 ntBASIC1.54□□□□□ -2.16
CPSF4O95639 RN7SKP101-201ENST00000411376 320 ntBASIC1.54□□□□□ -2.16
CPSF4O95639 AC007179.1-201ENST00000415159 438 ntTSL 3 BASIC1.54□□□□□ -2.16
CPSF4O95639 RPL22P18-201ENST00000417197 377 ntBASIC1.54□□□□□ -2.16
CPSF4O95639 AL596220.1-202ENST00000429768 314 ntTSL 3 BASIC1.54□□□□□ -2.16
CPSF4O95639 HMGB1P27-201ENST00000431429 603 ntBASIC1.54□□□□□ -2.16
CPSF4O95639 PCYT1B-AS1-201ENST00000432626 275 ntTSL 2 BASIC1.54□□□□□ -2.16
CPSF4O95639 AC003001.1-201ENST00000443247 1135 ntTSL 5 BASIC1.54□□□□□ -2.16
CPSF4O95639 AC073174.1-201ENST00000444155 415 ntTSL 5 BASIC1.54□□□□□ -2.16
CPSF4O95639 GDI2P2-201ENST00000445131 608 ntBASIC1.54□□□□□ -2.16
CPSF4O95639 AL606662.1-201ENST00000445763 553 ntBASIC1.54□□□□□ -2.16
CPSF4O95639 AL606517.1-201ENST00000446914 387 ntBASIC1.54□□□□□ -2.16
CPSF4O95639 Z73417.1-201ENST00000447373 778 ntBASIC1.54□□□□□ -2.16
CPSF4O95639 RPL37P6-201ENST00000460682 294 ntBASIC1.54□□□□□ -2.16
CPSF4O95639 UBL5P3-201ENST00000475112 231 ntBASIC1.54□□□□□ -2.16
CPSF4O95639 AL627309.4-201ENST00000496488 457 ntTSL 5 BASIC1.54□□□□□ -2.16
CPSF4O95639 LINC02494-201ENST00000509824 427 ntTSL 3 BASIC1.54□□□□□ -2.16
CPSF4O95639 AC116347.2-201ENST00000514912 523 ntBASIC1.54□□□□□ -2.16
CPSF4O95639 AC022447.1-201ENST00000515358 464 ntBASIC1.54□□□□□ -2.16
CPSF4O95639 LINC01216-201ENST00000515728 824 ntTSL 5 BASIC1.54□□□□□ -2.16
CPSF4O95639 RNU6-703P-201ENST00000516946 107 ntBASIC1.54□□□□□ -2.16
CPSF4O95639 MRPS36P3-201ENST00000519284 130 ntBASIC1.54□□□□□ -2.16
CPSF4O95639 BTF3P12-201ENST00000519620 469 ntBASIC1.54□□□□□ -2.16
CPSF4O95639 TMCO5B-203ENST00000529623 509 ntTSL 4 BASIC1.54□□□□□ -2.16
CPSF4O95639 LINC02235-201ENST00000534675 466 ntTSL 5 BASIC1.54□□□□□ -2.16
CPSF4O95639 MRPS36P5-201ENST00000551909 298 ntBASIC1.54□□□□□ -2.16
CPSF4O95639 PCLAF-207ENST00000559519 749 ntTSL 2 BASIC1.54□□□□□ -2.16
CPSF4O95639 AC021739.1-201ENST00000559631 174 ntBASIC1.54□□□□□ -2.16
CPSF4O95639 AC007151.1-201ENST00000572774 483 ntBASIC1.54□□□□□ -2.16
CPSF4O95639 AP001004.1-201ENST00000582468 324 ntBASIC1.54□□□□□ -2.16
CPSF4O95639 LINC01899-202ENST00000583756 575 ntTSL 3 BASIC1.54□□□□□ -2.16
CPSF4O95639 KC877982.1-201ENST00000602313 470 ntBASIC1.54□□□□□ -2.16
CPSF4O95639 AP000811.1-201ENST00000603803 651 ntBASIC1.54□□□□□ -2.16
CPSF4O95639 AC007363.1-201ENST00000604736 620 ntBASIC1.54□□□□□ -2.16
CPSF4O95639 AC025588.2-201ENST00000604851 466 ntBASIC1.54□□□□□ -2.16
CPSF4O95639 AC144521.1-201ENST00000607148 956 ntBASIC1.54□□□□□ -2.16
CPSF4O95639 AC135507.1-201ENST00000607214 561 ntBASIC1.54□□□□□ -2.16
CPSF4O95639 AC025594.3-201ENST00000613068 790 ntBASIC1.54□□□□□ -2.16
CPSF4O95639 AL050303.3-201ENST00000613704 284 ntBASIC1.54□□□□□ -2.16
CPSF4O95639 AL445584.2-201ENST00000614030 616 ntTSL 5 BASIC1.54□□□□□ -2.16
CPSF4O95639 OR4C15-202ENST00000642128 951 ntAPPRIS P1 BASIC1.54□□□□□ -2.16
CPSF4O95639 AL354685.2-201ENST00000448218 1447 ntBASIC1.54□□□□□ -2.16
CPSF4O95639 KLRA1P-202ENST00000510134 1410 ntTSL 5 BASIC1.54□□□□□ -2.16
CPSF4O95639 SLC25A46-206ENST00000509432 1596 ntTSL 2 BASIC1.54□□□□□ -2.16
CPSF4O95639 CFHR4-202ENST00000367416 2178 ntAPPRIS P1 TSL 2 BASIC1.54□□□□□ -2.16
CPSF4O95639 RNY4P24-201ENST00000362735 96 ntBASIC1.53□□□□□ -2.16
CPSF4O95639 RNY3P13-201ENST00000365542 102 ntBASIC1.53□□□□□ -2.16
CPSF4O95639 RNU6-658P-201ENST00000384606 106 ntBASIC1.53□□□□□ -2.16
CPSF4O95639 RNU6-920P-201ENST00000410926 92 ntBASIC1.53□□□□□ -2.16
CPSF4O95639 ELOCP17-201ENST00000414751 326 ntBASIC1.53□□□□□ -2.16
CPSF4O95639 RPS24P7-201ENST00000416921 246 ntBASIC1.53□□□□□ -2.16
CPSF4O95639 AL590399.3-201ENST00000438072 543 ntTSL 5 BASIC1.53□□□□□ -2.16
CPSF4O95639 LINC01510-201ENST00000441991 468 ntTSL 3 BASIC1.53□□□□□ -2.16
CPSF4O95639 NEFMP1-201ENST00000443423 1006 ntBASIC1.53□□□□□ -2.16
CPSF4O95639 HMGN2P10-201ENST00000448085 265 ntBASIC1.53□□□□□ -2.16
CPSF4O95639 SNORA59A-201ENST00000459326 152 ntBASIC1.53□□□□□ -2.16
CPSF4O95639 AC073359.2-201ENST00000478814 351 ntTSL 3 BASIC1.53□□□□□ -2.16
CPSF4O95639 AC074033.2-201ENST00000480669 535 ntTSL 3 BASIC1.53□□□□□ -2.16
CPSF4O95639 AC027335.1-201ENST00000515377 543 ntTSL 4 BASIC1.53□□□□□ -2.16
CPSF4O95639 RNU2-44P-201ENST00000516795 194 ntBASIC1.53□□□□□ -2.16
CPSF4O95639 RNU6-1003P-201ENST00000517099 105 ntBASIC1.53□□□□□ -2.16
CPSF4O95639 AC103957.1-201ENST00000517681 503 ntTSL 3 BASIC1.53□□□□□ -2.16
CPSF4O95639 ZNF706-202ENST00000517844 604 ntAPPRIS P1 TSL 3 BASIC1.53□□□□□ -2.16
CPSF4O95639 UTP23-205ENST00000520733 369 ntTSL 3 BASIC1.53□□□□□ -2.16
CPSF4O95639 AC023632.5-201ENST00000521010 491 ntTSL 3 BASIC1.53□□□□□ -2.16
CPSF4O95639 AC018410.2-201ENST00000540410 610 ntTSL 5 BASIC1.53□□□□□ -2.16
CPSF4O95639 AC090503.1-201ENST00000548029 729 ntTSL 3 BASIC1.53□□□□□ -2.16
CPSF4O95639 AC006199.1-201ENST00000548728 219 ntBASIC1.53□□□□□ -2.16
CPSF4O95639 ARL2BPP2-201ENST00000550907 489 ntBASIC1.53□□□□□ -2.16
CPSF4O95639 MIR3146-201ENST00000580367 79 ntBASIC1.53□□□□□ -2.16
CPSF4O95639 AC073544.2-201ENST00000601155 540 ntBASIC1.53□□□□□ -2.16
CPSF4O95639 AL391813.1-201ENST00000603098 260 ntBASIC1.53□□□□□ -2.16
CPSF4O95639 AL358072.1-201ENST00000604156 575 ntBASIC1.53□□□□□ -2.16
CPSF4O95639 AL355598.1-201ENST00000604169 202 ntBASIC1.53□□□□□ -2.16
CPSF4O95639 AP000860.1-201ENST00000605250 559 ntBASIC1.53□□□□□ -2.16
CPSF4O95639 MIR502-201ENST00000606349 86 ntBASIC1.53□□□□□ -2.16
CPSF4O95639 ST7-OT4_4.1-201ENST00000614993 213 ntBASIC1.53□□□□□ -2.16
CPSF4O95639 SLC9C2-201ENST00000367714 4428 ntAPPRIS P1 TSL 1 (best) BASIC1.52□□□□□ -2.17
CPSF4O95639 ADAM3A-203ENST00000461344 2157 ntBASIC1.52□□□□□ -2.17
CPSF4O95639 AC006026.1-201ENST00000444025 1803 ntBASIC1.52□□□□□ -2.17
CPSF4O95639 DPY19L2P1-203ENST00000458672 3347 ntTSL 1 (best) BASIC1.52□□□□□ -2.17
CPSF4O95639 COMMD8-201ENST00000381571 1469 ntAPPRIS P1 TSL 1 (best) BASIC1.52□□□□□ -2.17
CPSF4O95639 NACAP2-201ENST00000318548 624 ntBASIC1.52□□□□□ -2.17
CPSF4O95639 HMGB1-201ENST00000326004 821 ntTSL 3 BASIC1.52□□□□□ -2.17
CPSF4O95639 RNU6-188P-201ENST00000364207 107 ntBASIC1.52□□□□□ -2.17
CPSF4O95639 RNU4-28P-201ENST00000364739 141 ntBASIC1.52□□□□□ -2.17
CPSF4O95639 AKR1C1-201ENST00000380859 858 ntTSL 3 BASIC1.52□□□□□ -2.17
CPSF4O95639 RNU6-1083P-201ENST00000384022 107 ntBASIC1.52□□□□□ -2.17
CPSF4O95639 RNU6-809P-201ENST00000384461 107 ntBASIC1.52□□□□□ -2.17
CPSF4O95639 RNU6-220P-201ENST00000390919 107 ntBASIC1.52□□□□□ -2.17
CPSF4O95639 RNU2-36P-201ENST00000410361 191 ntBASIC1.52□□□□□ -2.17
CPSF4O95639 AC104462.1-201ENST00000414565 447 ntTSL 2 BASIC1.52□□□□□ -2.17
CPSF4O95639 AC098592.1-201ENST00000419352 333 ntBASIC1.52□□□□□ -2.17
CPSF4O95639 SEPT2P1-201ENST00000419651 180 ntBASIC1.52□□□□□ -2.17
CPSF4O95639 LINC01780-201ENST00000420059 442 ntTSL 2 BASIC1.52□□□□□ -2.17
CPSF4O95639 LINC01037-201ENST00000427337 424 ntTSL 5 BASIC1.52□□□□□ -2.17
CPSF4O95639 AL592045.1-201ENST00000429867 352 ntBASIC1.52□□□□□ -2.17
CPSF4O95639 AL731563.2-201ENST00000431293 291 ntTSL 5 BASIC1.52□□□□□ -2.17
CPSF4O95639 RPL37P21-201ENST00000435890 276 ntBASIC1.52□□□□□ -2.17
CPSF4O95639 MTND4P25-201ENST00000441039 533 ntBASIC1.52□□□□□ -2.17
Retrieved 100 of 98,524 protein–RNA pairs in 101.6 ms