Protein–RNA interactions for Protein: O75351

VPS4B, Vacuolar protein sorting-associated protein 4B, humanhuman

Predictions only

Length 444 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4BO75351 U8.12-201ENST00000384701 133 ntBASIC3.59□□□□□ -1.83
VPS4BO75351 MTHFD2P2-201ENST00000407725 247 ntBASIC3.59□□□□□ -1.83
VPS4BO75351 MIR1302-11-201ENST00000408051 138 ntBASIC3.59□□□□□ -1.83
VPS4BO75351 MIR1302-9-201ENST00000408365 138 ntBASIC3.59□□□□□ -1.83
VPS4BO75351 MIR1302-10-201ENST00000408734 138 ntBASIC3.59□□□□□ -1.83
VPS4BO75351 AC007314.1-201ENST00000414538 565 ntTSL 4 BASIC3.59□□□□□ -1.83
VPS4BO75351 AL158156.1-201ENST00000422509 473 ntBASIC3.59□□□□□ -1.83
VPS4BO75351 AC092047.1-201ENST00000424997 240 ntBASIC3.59□□□□□ -1.83
VPS4BO75351 LINC01710-201ENST00000446002 390 ntTSL 5 BASIC3.59□□□□□ -1.83
VPS4BO75351 U8.18-201ENST00000459285 133 ntBASIC3.59□□□□□ -1.83
VPS4BO75351 LINC02198-202ENST00000505371 526 ntTSL 5 BASIC3.59□□□□□ -1.83
VPS4BO75351 RN7SKP18-201ENST00000516005 275 ntBASIC3.59□□□□□ -1.83
VPS4BO75351 RNU6-559P-201ENST00000516151 98 ntBASIC3.59□□□□□ -1.83
VPS4BO75351 Y_RNA.718-201ENST00000517110 102 ntBASIC3.59□□□□□ -1.83
VPS4BO75351 FAM92A-209ENST00000519679 538 ntTSL 4 BASIC3.59□□□□□ -1.83
VPS4BO75351 AC022695.1-201ENST00000522089 237 ntBASIC3.59□□□□□ -1.83
VPS4BO75351 AP001825.1-201ENST00000534275 351 ntTSL 2 BASIC3.59□□□□□ -1.83
VPS4BO75351 AL442663.2-201ENST00000554385 511 ntBASIC3.59□□□□□ -1.83
VPS4BO75351 AL512791.1-201ENST00000555853 300 ntTSL 3 BASIC3.59□□□□□ -1.83
VPS4BO75351 AC138761.3-201ENST00000579993 334 ntBASIC3.59□□□□□ -1.83
VPS4BO75351 MIR4425-201ENST00000580572 84 ntBASIC3.59□□□□□ -1.83
VPS4BO75351 LINC02104-202ENST00000604954 599 ntTSL 3 BASIC3.59□□□□□ -1.83
VPS4BO75351 AC005000.2-201ENST00000605468 310 ntBASIC3.59□□□□□ -1.83
VPS4BO75351 AC002044.1-201ENST00000606707 158 ntBASIC3.59□□□□□ -1.83
VPS4BO75351 MIR1302-2-201ENST00000607096 138 ntBASIC3.59□□□□□ -1.83
VPS4BO75351 AL359757.2-201ENST00000624309 274 ntBASIC3.59□□□□□ -1.83
VPS4BO75351 AC007785.2-201ENST00000598627 1916 ntBASIC3.59□□□□□ -1.83
VPS4BO75351 LRMP-221ENST00000636465 4540 ntAPPRIS ALT2 TSL 5 BASIC3.59□□□□□ -1.83
VPS4BO75351 ADGRV1-201ENST00000405460 19557 ntAPPRIS P1 TSL 1 (best) BASIC3.59□□□□□ -1.83
VPS4BO75351 UBE3A-202ENST00000397954 2873 ntTSL 5 BASIC3.59□□□□□ -1.84
VPS4BO75351 PLPPR4-201ENST00000370184 4505 ntTSL 5 BASIC3.59□□□□□ -1.84
VPS4BO75351 FOXP2-206ENST00000393491 6085 ntTSL 5 BASIC3.58□□□□□ -1.84
VPS4BO75351 AC005183.1-201ENST00000603687 1979 ntBASIC3.58□□□□□ -1.84
VPS4BO75351 TRIM36-201ENST00000282369 4050 ntAPPRIS P1 TSL 1 (best) BASIC3.58□□□□□ -1.84
VPS4BO75351 CASP1-201ENST00000353247 423 ntTSL 1 (best) BASIC3.58□□□□□ -1.84
VPS4BO75351 RNU6-562P-201ENST00000362731 107 ntBASIC3.58□□□□□ -1.84
VPS4BO75351 Y_RNA.259-201ENST00000364619 101 ntBASIC3.58□□□□□ -1.84
VPS4BO75351 RNVU1-14-201ENST00000384770 164 ntBASIC3.58□□□□□ -1.84
VPS4BO75351 U3.42-201ENST00000408746 214 ntBASIC3.58□□□□□ -1.84
VPS4BO75351 RPL37P10-201ENST00000412884 288 ntBASIC3.58□□□□□ -1.84
VPS4BO75351 AC010967.2-201ENST00000418451 333 ntTSL 2 BASIC3.58□□□□□ -1.84
VPS4BO75351 RPL7P37-201ENST00000425095 738 ntBASIC3.58□□□□□ -1.84
VPS4BO75351 ARF4P2-201ENST00000430209 526 ntBASIC3.58□□□□□ -1.84
VPS4BO75351 AC005534.2-201ENST00000431047 433 ntBASIC3.58□□□□□ -1.84
VPS4BO75351 GPM6BP2-201ENST00000432046 144 ntBASIC3.58□□□□□ -1.84
VPS4BO75351 NDUFB1P1-201ENST00000435191 180 ntBASIC3.58□□□□□ -1.84
VPS4BO75351 AL359672.1-201ENST00000442302 409 ntBASIC3.58□□□□□ -1.84
VPS4BO75351 GPM6BP1-201ENST00000446387 144 ntBASIC3.58□□□□□ -1.84
VPS4BO75351 NDUFB1P2-201ENST00000449477 176 ntBASIC3.58□□□□□ -1.84
VPS4BO75351 AC104619.4-201ENST00000510773 249 ntBASIC3.58□□□□□ -1.84
VPS4BO75351 AC096721.1-201ENST00000513540 552 ntTSL 4 BASIC3.58□□□□□ -1.84
VPS4BO75351 RNU6-273P-201ENST00000516937 96 ntBASIC3.58□□□□□ -1.84
VPS4BO75351 AP005597.4-201ENST00000526762 229 ntBASIC3.58□□□□□ -1.84
VPS4BO75351 TRAV37-201ENST00000553906 342 ntBASIC3.58□□□□□ -1.84
VPS4BO75351 IGKV2OR2-8-201ENST00000558710 300 ntBASIC3.58□□□□□ -1.84
VPS4BO75351 AC004147.3-201ENST00000577709 375 ntTSL 3 BASIC3.58□□□□□ -1.84
VPS4BO75351 AC007631.1-201ENST00000578545 189 ntTSL 3 BASIC3.58□□□□□ -1.84
VPS4BO75351 MIR5047-201ENST00000579212 100 ntBASIC3.58□□□□□ -1.84
VPS4BO75351 AD001527.1-201ENST00000604228 379 ntTSL 5 BASIC3.58□□□□□ -1.84
VPS4BO75351 AC136601.2-201ENST00000604356 474 ntBASIC3.58□□□□□ -1.84
VPS4BO75351 AC064836.2-201ENST00000609491 462 ntBASIC3.58□□□□□ -1.84
VPS4BO75351 AL138686.1-201ENST00000612699 315 ntTSL 3 BASIC3.58□□□□□ -1.84
VPS4BO75351 AC126177.8-201ENST00000618339 1015 ntBASIC3.58□□□□□ -1.84
VPS4BO75351 MIR7975-201ENST00000619350 68 ntBASIC3.58□□□□□ -1.84
VPS4BO75351 SNORD39.4-201ENST00000620099 78 ntBASIC3.58□□□□□ -1.84
VPS4BO75351 C4orf22-209ENST00000621014 228 ntTSL 3 BASIC3.58□□□□□ -1.84
VPS4BO75351 SEPT14P19-202ENST00000632397 370 ntTSL 3 BASIC3.58□□□□□ -1.84
VPS4BO75351 RAD17-206ENST00000358030 2648 ntTSL 1 (best) BASIC3.58□□□□□ -1.84
VPS4BO75351 ECT2-211ENST00000441497 2825 ntAPPRIS P2 TSL 1 (best) BASIC3.58□□□□□ -1.84
VPS4BO75351 CDK1-201ENST00000316629 1733 ntTSL 5 BASIC3.58□□□□□ -1.84
VPS4BO75351 SYNE1-201ENST00000341594 26584 ntAPPRIS ALT2 TSL 5 BASIC3.58□□□□□ -1.84
VPS4BO75351 FNDC3A-202ENST00000398316 5714 ntTSL 1 (best) BASIC3.58□□□□□ -1.84
VPS4BO75351 RTN4-208ENST00000404909 4102 ntTSL 1 (best) BASIC3.58□□□□□ -1.84
VPS4BO75351 HELZ-201ENST00000358691 13810 ntTSL 1 (best) BASIC3.58□□□□□ -1.84
VPS4BO75351 WDR49-201ENST00000308378 2594 ntAPPRIS P2 TSL 1 (best) BASIC3.57□□□□□ -1.84
VPS4BO75351 IL36B-202ENST00000327407 1052 ntAPPRIS P1 TSL 1 (best) BASIC3.57□□□□□ -1.84
VPS4BO75351 HMGN5-201ENST00000358130 2126 ntAPPRIS P2 TSL 2 BASIC3.57□□□□□ -1.84
VPS4BO75351 Y_RNA.482-201ENST00000384377 111 ntBASIC3.57□□□□□ -1.84
VPS4BO75351 NT5C3A-205ENST00000409467 1032 ntAPPRIS ALT1 TSL 5 BASIC3.57□□□□□ -1.84
VPS4BO75351 RNU6-954P-201ENST00000411355 107 ntBASIC3.57□□□□□ -1.84
VPS4BO75351 SYF2P2-201ENST00000417620 583 ntBASIC3.57□□□□□ -1.84
VPS4BO75351 AC093911.1-201ENST00000419129 552 ntTSL 4 BASIC3.57□□□□□ -1.84
VPS4BO75351 UBE2D3P2-201ENST00000424409 445 ntBASIC3.57□□□□□ -1.84
VPS4BO75351 AL591419.1-201ENST00000427423 339 ntBASIC3.57□□□□□ -1.84
VPS4BO75351 Z82210.1-201ENST00000440037 231 ntBASIC3.57□□□□□ -1.84
VPS4BO75351 AL138921.2-201ENST00000443919 578 ntTSL 5 BASIC3.57□□□□□ -1.84
VPS4BO75351 RNU7-138P-201ENST00000459479 64 ntBASIC3.57□□□□□ -1.84
VPS4BO75351 AC106707.2-201ENST00000484182 374 ntBASIC3.57□□□□□ -1.84
VPS4BO75351 AC011005.2-201ENST00000487324 359 ntBASIC3.57□□□□□ -1.84
VPS4BO75351 ATP1B3-AS1-201ENST00000492725 376 ntTSL 5 BASIC3.57□□□□□ -1.84
VPS4BO75351 RPS27P27-201ENST00000498779 255 ntBASIC3.57□□□□□ -1.84
VPS4BO75351 AC026780.2-201ENST00000503489 730 ntTSL 5 BASIC3.57□□□□□ -1.84
VPS4BO75351 HMGB3P15-201ENST00000507326 574 ntBASIC3.57□□□□□ -1.84
VPS4BO75351 AC024022.1-202ENST00000508911 394 ntTSL 2 BASIC3.57□□□□□ -1.84
VPS4BO75351 RPL39P5-202ENST00000512505 151 ntBASIC3.57□□□□□ -1.84
VPS4BO75351 RN7SKP24-201ENST00000515888 284 ntBASIC3.57□□□□□ -1.84
VPS4BO75351 RNU1-86P-201ENST00000516108 154 ntBASIC3.57□□□□□ -1.84
VPS4BO75351 RNU1-107P-201ENST00000516617 154 ntBASIC3.57□□□□□ -1.84
VPS4BO75351 RNA5SP290-201ENST00000517133 127 ntBASIC3.57□□□□□ -1.84
VPS4BO75351 AC009902.1-201ENST00000519351 183 ntBASIC3.57□□□□□ -1.84
Retrieved 100 of 98,524 protein–RNA pairs in 129.8 ms