Protein–RNA interactions for Protein: O15347

HMGB3, High mobility group protein B3, humanhuman

Known RBP Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3O15347 AC006338.1-201ENST00000618453 749 ntBASIC1.1□□□□□ -2.23
HMGB3O15347 SAGE1-202ENST00000370709 2879 ntAPPRIS P2 TSL 5 BASIC1.1□□□□□ -2.23
HMGB3O15347 AL161781.1-201ENST00000354277 403 ntBASIC1.09□□□□□ -2.23
HMGB3O15347 MIR449A-201ENST00000362113 91 ntBASIC1.09□□□□□ -2.23
HMGB3O15347 RNU6-707P-201ENST00000364647 95 ntBASIC1.09□□□□□ -2.23
HMGB3O15347 RNU6-1280P-201ENST00000365211 107 ntBASIC1.09□□□□□ -2.23
HMGB3O15347 RNU6-203P-201ENST00000384038 104 ntBASIC1.09□□□□□ -2.23
HMGB3O15347 RNU6-611P-201ENST00000384276 104 ntBASIC1.09□□□□□ -2.23
HMGB3O15347 SNORA67.5-201ENST00000391036 107 ntBASIC1.09□□□□□ -2.23
HMGB3O15347 UBE2V1P2-201ENST00000397758 440 ntBASIC1.09□□□□□ -2.23
HMGB3O15347 AL133475.1-201ENST00000404414 305 ntBASIC1.09□□□□□ -2.23
HMGB3O15347 RNA5SP100-201ENST00000410903 110 ntBASIC1.09□□□□□ -2.23
HMGB3O15347 RNA5SP59-201ENST00000410922 110 ntBASIC1.09□□□□□ -2.23
HMGB3O15347 BX664727.1-201ENST00000416024 466 ntBASIC1.09□□□□□ -2.23
HMGB3O15347 MTND4P6-201ENST00000438297 472 ntBASIC1.09□□□□□ -2.23
HMGB3O15347 RPL7P36-201ENST00000444633 681 ntBASIC1.09□□□□□ -2.23
HMGB3O15347 AL353780.1-201ENST00000455583 458 ntTSL 2 BASIC1.09□□□□□ -2.23
HMGB3O15347 AL359915.2-203ENST00000457043 540 ntTSL 3 BASIC1.09□□□□□ -2.23
HMGB3O15347 RNU7-136P-201ENST00000458819 69 ntBASIC1.09□□□□□ -2.23
HMGB3O15347 AC005908.1-201ENST00000468701 347 ntBASIC1.09□□□□□ -2.23
HMGB3O15347 AC068587.2-201ENST00000478386 781 ntBASIC1.09□□□□□ -2.23
HMGB3O15347 AC026780.2-201ENST00000503489 730 ntTSL 5 BASIC1.09□□□□□ -2.23
HMGB3O15347 LINC01612-201ENST00000504509 469 ntTSL 3 BASIC1.09□□□□□ -2.23
HMGB3O15347 AC121161.1-201ENST00000510606 652 ntBASIC1.09□□□□□ -2.23
HMGB3O15347 5S_rRNA.3-201ENST00000517021 110 ntBASIC1.09□□□□□ -2.23
HMGB3O15347 RN7SKP258-201ENST00000517151 304 ntBASIC1.09□□□□□ -2.23
HMGB3O15347 RNU6-586P-201ENST00000517265 104 ntBASIC1.09□□□□□ -2.23
HMGB3O15347 AC090857.2-201ENST00000526362 723 ntTSL 2 BASIC1.09□□□□□ -2.23
HMGB3O15347 AC011611.2-201ENST00000549888 358 ntTSL 3 BASIC1.09□□□□□ -2.23
HMGB3O15347 AC023906.2-201ENST00000558343 462 ntTSL 3 BASIC1.09□□□□□ -2.23
HMGB3O15347 CLIC4P2-201ENST00000601934 717 ntBASIC1.09□□□□□ -2.23
HMGB3O15347 5S_rRNA.19-201ENST00000612131 110 ntBASIC1.09□□□□□ -2.23
HMGB3O15347 5S_rRNA.18-201ENST00000621941 110 ntBASIC1.09□□□□□ -2.23
HMGB3O15347 TBC1D15-210ENST00000485960 2489 ntAPPRIS P1 TSL 1 (best) BASIC1.09□□□□□ -2.24
HMGB3O15347 LINC02510-201ENST00000509798 1576 ntTSL 1 (best) BASIC1.08□□□□□ -2.24
HMGB3O15347 CEP162-201ENST00000257766 5063 ntTSL 1 (best) BASIC1.08□□□□□ -2.24
HMGB3O15347 AC138393.1-203ENST00000327086 343 ntBASIC1.08□□□□□ -2.24
HMGB3O15347 PMCH-201ENST00000329406 766 ntAPPRIS P1 TSL 1 (best) BASIC1.08□□□□□ -2.24
HMGB3O15347 DNAJC12-202ENST00000339758 1064 ntTSL 1 (best) BASIC1.08□□□□□ -2.24
HMGB3O15347 RNU1-58P-201ENST00000362413 163 ntBASIC1.08□□□□□ -2.24
HMGB3O15347 BRK1P2-201ENST00000442875 223 ntBASIC1.08□□□□□ -2.24
HMGB3O15347 MEMO1P3-201ENST00000459811 302 ntBASIC1.08□□□□□ -2.24
HMGB3O15347 RPL31P58-201ENST00000469001 379 ntBASIC1.08□□□□□ -2.24
HMGB3O15347 OARD1-209ENST00000471367 401 ntTSL 2 BASIC1.08□□□□□ -2.24
HMGB3O15347 AC084117.1-201ENST00000496975 270 ntTSL 5 BASIC1.08□□□□□ -2.24
HMGB3O15347 AC093801.2-201ENST00000503966 1050 ntBASIC1.08□□□□□ -2.24
HMGB3O15347 AC010420.1-201ENST00000515077 509 ntTSL 3 BASIC1.08□□□□□ -2.24
HMGB3O15347 AC079907.1-201ENST00000552707 374 ntTSL 3 BASIC1.08□□□□□ -2.24
HMGB3O15347 AC092138.2-201ENST00000563811 428 ntTSL 5 BASIC1.08□□□□□ -2.24
HMGB3O15347 AC005909.1-201ENST00000577835 755 ntTSL 3 BASIC1.08□□□□□ -2.24
HMGB3O15347 AC008543.4-201ENST00000585694 442 ntTSL 2 BASIC1.08□□□□□ -2.24
HMGB3O15347 RPL30P11-203ENST00000598995 310 ntBASIC1.08□□□□□ -2.24
HMGB3O15347 AC107952.2-201ENST00000606048 486 ntBASIC1.08□□□□□ -2.24
HMGB3O15347 AL132822.1-201ENST00000617063 513 ntBASIC1.08□□□□□ -2.24
HMGB3O15347 AP003476.1-201ENST00000623984 516 ntBASIC1.08□□□□□ -2.24
HMGB3O15347 CCDC14-221ENST00000489746 6476 ntAPPRIS ALT2 TSL 1 (best) BASIC1.08□□□□□ -2.24
HMGB3O15347 ZNF260-205ENST00000593142 4047 ntAPPRIS P1 TSL 1 (best) BASIC1.08□□□□□ -2.24
HMGB3O15347 CDR1-202ENST00000625883 1485 ntBASIC1.07□□□□□ -2.24
HMGB3O15347 RGS13-204ENST00000543215 1518 ntAPPRIS P1 TSL 1 (best) BASIC1.07□□□□□ -2.24
HMGB3O15347 IL36B-202ENST00000327407 1052 ntAPPRIS P1 TSL 1 (best) BASIC1.07□□□□□ -2.24
HMGB3O15347 UBE2Q2P1-202ENST00000354771 883 ntBASIC1.07□□□□□ -2.24
HMGB3O15347 U8.2-201ENST00000363156 134 ntBASIC1.07□□□□□ -2.24
HMGB3O15347 RNU6-512P-201ENST00000364438 103 ntBASIC1.07□□□□□ -2.24
HMGB3O15347 SNORD14D-201ENST00000384390 87 ntBASIC1.07□□□□□ -2.24
HMGB3O15347 Y_RNA.510-201ENST00000384511 114 ntBASIC1.07□□□□□ -2.24
HMGB3O15347 RNU6-939P-201ENST00000384634 107 ntBASIC1.07□□□□□ -2.24
HMGB3O15347 RNU2-41P-201ENST00000410991 178 ntBASIC1.07□□□□□ -2.24
HMGB3O15347 LINC00301-202ENST00000412599 772 ntTSL 1 (best) BASIC1.07□□□□□ -2.24
HMGB3O15347 AC008267.5-201ENST00000424928 265 ntBASIC1.07□□□□□ -2.24
HMGB3O15347 AC113331.1-201ENST00000428160 869 ntTSL 2 BASIC1.07□□□□□ -2.24
HMGB3O15347 AL589986.2-201ENST00000429352 397 ntTSL 2 BASIC1.07□□□□□ -2.24
HMGB3O15347 AC073325.1-201ENST00000443714 542 ntTSL 4 BASIC1.07□□□□□ -2.24
HMGB3O15347 AC017099.1-201ENST00000448261 1028 ntBASIC1.07□□□□□ -2.24
HMGB3O15347 AC013269.3-201ENST00000450486 444 ntTSL 3 BASIC1.07□□□□□ -2.24
HMGB3O15347 PRELID3BP1-201ENST00000457142 540 ntBASIC1.07□□□□□ -2.24
HMGB3O15347 AC010631.1-201ENST00000474150 156 ntBASIC1.07□□□□□ -2.24
HMGB3O15347 NCOR1P1-201ENST00000478176 406 ntTSL 1 (best) BASIC1.07□□□□□ -2.24
HMGB3O15347 AL365273.2-201ENST00000491114 492 ntAPPRIS P1 TSL 5 BASIC1.07□□□□□ -2.24
HMGB3O15347 PGRMC2-204ENST00000503872 1028 ntTSL 3 BASIC1.07□□□□□ -2.24
HMGB3O15347 PTP4A1P4-201ENST00000512479 322 ntBASIC1.07□□□□□ -2.24
HMGB3O15347 RNU6-390P-201ENST00000516259 103 ntBASIC1.07□□□□□ -2.24
HMGB3O15347 AP005660.1-201ENST00000522972 293 ntBASIC1.07□□□□□ -2.24
HMGB3O15347 AP000753.2-201ENST00000540307 423 ntTSL 3 BASIC1.07□□□□□ -2.24
HMGB3O15347 AP000763.2-201ENST00000540641 163 ntBASIC1.07□□□□□ -2.24
HMGB3O15347 ZKSCAN7P1-201ENST00000543668 673 ntBASIC1.07□□□□□ -2.24
HMGB3O15347 AC123905.1-201ENST00000552098 541 ntTSL 4 BASIC1.07□□□□□ -2.24
HMGB3O15347 SNRPGP1-201ENST00000553864 222 ntBASIC1.07□□□□□ -2.24
HMGB3O15347 ACTG1P17-203ENST00000561222 537 ntTSL 3 BASIC1.07□□□□□ -2.24
HMGB3O15347 AC021171.1-201ENST00000603137 706 ntBASIC1.07□□□□□ -2.24
HMGB3O15347 CYP2C61P-201ENST00000604072 290 ntBASIC1.07□□□□□ -2.24
HMGB3O15347 MIR6845-201ENST00000613182 61 ntBASIC1.07□□□□□ -2.24
HMGB3O15347 MIR8084-201ENST00000614105 89 ntBASIC1.07□□□□□ -2.24
HMGB3O15347 AC091834.1-201ENST00000614543 472 ntBASIC1.07□□□□□ -2.24
HMGB3O15347 MIR8074-201ENST00000615081 81 ntBASIC1.07□□□□□ -2.24
HMGB3O15347 OR8H2-202ENST00000618136 1038 ntAPPRIS ALT1 BASIC1.07□□□□□ -2.24
HMGB3O15347 AC099063.3-201ENST00000642066 185 ntBASIC1.07□□□□□ -2.24
HMGB3O15347 RBBP8P1-201ENST00000449447 1844 ntBASIC1.07□□□□□ -2.24
HMGB3O15347 LRRC69-201ENST00000343709 720 ntTSL 2 BASIC1.06□□□□□ -2.24
HMGB3O15347 TRAJ39-201ENST00000390498 63 ntAPPRIS P1 BASIC1.06□□□□□ -2.24
HMGB3O15347 RNU4-26P-201ENST00000410270 107 ntBASIC1.06□□□□□ -2.24
Retrieved 100 of 98,524 protein–RNA pairs in 101.7 ms