Protein–RNA interactions for Protein: A6NC98

CCDC88B, Coiled-coil domain-containing protein 88B, humanhuman

Predictions only

Length 1,476 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88BA6NC98 SNORA63.3-201ENST00000362682 132 ntBASIC0.64□□□□□ -2.31
CCDC88BA6NC98 RNU6-270P-201ENST00000364131 105 ntBASIC0.64□□□□□ -2.31
CCDC88BA6NC98 RNU4-67P-201ENST00000364569 141 ntBASIC0.64□□□□□ -2.31
CCDC88BA6NC98 MEIG1-201ENST00000378240 507 ntAPPRIS P1 TSL 2 BASIC0.64□□□□□ -2.31
CCDC88BA6NC98 VN1R42P-201ENST00000424651 344 ntBASIC0.64□□□□□ -2.31
CCDC88BA6NC98 AC134050.1-201ENST00000495088 933 ntBASIC0.64□□□□□ -2.31
CCDC88BA6NC98 LINC01612-201ENST00000504509 469 ntTSL 3 BASIC0.64□□□□□ -2.31
CCDC88BA6NC98 AP006587.4-201ENST00000526053 529 ntBASIC0.64□□□□□ -2.31
CCDC88BA6NC98 AL132857.1-201ENST00000555180 708 ntBASIC0.64□□□□□ -2.31
CCDC88BA6NC98 HMGN1P30-201ENST00000589286 268 ntBASIC0.64□□□□□ -2.31
CCDC88BA6NC98 MDM2-205ENST00000348801 798 ntTSL 1 (best) BASIC0.63□□□□□ -2.31
CCDC88BA6NC98 RNU6-418P-201ENST00000384035 107 ntBASIC0.63□□□□□ -2.31
CCDC88BA6NC98 AC019070.1-201ENST00000415008 1024 ntBASIC0.63□□□□□ -2.31
CCDC88BA6NC98 AC009518.2-201ENST00000418056 731 ntBASIC0.63□□□□□ -2.31
CCDC88BA6NC98 AL135923.2-201ENST00000435444 501 ntTSL 2 BASIC0.63□□□□□ -2.31
CCDC88BA6NC98 SNRPEP7-201ENST00000438350 220 ntBASIC0.63□□□□□ -2.31
CCDC88BA6NC98 AL035666.1-201ENST00000446195 348 ntBASIC0.63□□□□□ -2.31
CCDC88BA6NC98 AL356272.1-201ENST00000454538 832 ntTSL 2 BASIC0.63□□□□□ -2.31
CCDC88BA6NC98 ACA64.5-201ENST00000516207 127 ntBASIC0.63□□□□□ -2.31
CCDC88BA6NC98 RNA5SP404-201ENST00000517118 132 ntBASIC0.63□□□□□ -2.31
CCDC88BA6NC98 LINC02384-208ENST00000546086 565 ntTSL 3 BASIC0.63□□□□□ -2.31
CCDC88BA6NC98 AC110792.4-201ENST00000609843 298 ntBASIC0.63□□□□□ -2.31
CCDC88BA6NC98 MIR6718-201ENST00000616153 80 ntBASIC0.63□□□□□ -2.31
CCDC88BA6NC98 RNU6-1083P-201ENST00000384022 107 ntBASIC0.62□□□□□ -2.31
CCDC88BA6NC98 RNU6-1035P-201ENST00000384477 107 ntBASIC0.62□□□□□ -2.31
CCDC88BA6NC98 MIR10B-201ENST00000385011 110 ntBASIC0.62□□□□□ -2.31
CCDC88BA6NC98 AL035410.1-201ENST00000427409 427 ntBASIC0.62□□□□□ -2.31
CCDC88BA6NC98 PRELID3BP1-201ENST00000457142 540 ntBASIC0.62□□□□□ -2.31
CCDC88BA6NC98 RNA5SP285-201ENST00000516619 119 ntBASIC0.62□□□□□ -2.31
CCDC88BA6NC98 AC103853.2-201ENST00000519805 716 ntTSL 3 BASIC0.62□□□□□ -2.31
CCDC88BA6NC98 AC068880.2-201ENST00000521016 362 ntTSL 5 BASIC0.62□□□□□ -2.31
CCDC88BA6NC98 OR8K4P-201ENST00000534608 872 ntBASIC0.62□□□□□ -2.31
CCDC88BA6NC98 MIR4504-201ENST00000577413 92 ntBASIC0.62□□□□□ -2.31
CCDC88BA6NC98 MIR6759-201ENST00000638110 65 ntBASIC0.62□□□□□ -2.31
CCDC88BA6NC98 RNU6-288P-201ENST00000363690 104 ntBASIC0.61□□□□□ -2.31
CCDC88BA6NC98 MIR518A2-201ENST00000384966 87 ntBASIC0.61□□□□□ -2.31
CCDC88BA6NC98 RPS24P7-201ENST00000416921 246 ntBASIC0.61□□□□□ -2.31
CCDC88BA6NC98 AL390879.2-204ENST00000438602 582 ntTSL 3 BASIC0.61□□□□□ -2.31
CCDC88BA6NC98 AC010789.1-201ENST00000458489 291 ntTSL 5 BASIC0.61□□□□□ -2.31
CCDC88BA6NC98 RNF138P1-201ENST00000502765 546 ntBASIC0.61□□□□□ -2.31
CCDC88BA6NC98 AP003122.4-201ENST00000530980 758 ntBASIC0.61□□□□□ -2.31
CCDC88BA6NC98 AL157938.2-201ENST00000587264 894 ntTSL 5 BASIC0.61□□□□□ -2.31
CCDC88BA6NC98 AP003973.1-201ENST00000604639 691 ntBASIC0.61□□□□□ -2.31
CCDC88BA6NC98 AC009974.1-201ENST00000608881 455 ntBASIC0.61□□□□□ -2.31
CCDC88BA6NC98 AC084824.5-201ENST00000612009 413 ntBASIC0.61□□□□□ -2.31
CCDC88BA6NC98 RNU1-36P-201ENST00000365130 165 ntBASIC0.61□□□□□ -2.31
CCDC88BA6NC98 RNU6-733P-201ENST00000410759 104 ntBASIC0.61□□□□□ -2.31
CCDC88BA6NC98 AC013410.2-201ENST00000422627 201 ntBASIC0.61□□□□□ -2.31
CCDC88BA6NC98 AC107081.2-201ENST00000425779 802 ntTSL 5 BASIC0.61□□□□□ -2.31
CCDC88BA6NC98 AL359915.2-203ENST00000457043 540 ntTSL 3 BASIC0.61□□□□□ -2.31
CCDC88BA6NC98 AP001025.1-201ENST00000486139 332 ntBASIC0.61□□□□□ -2.31
CCDC88BA6NC98 HMGB1P36-201ENST00000487709 576 ntBASIC0.61□□□□□ -2.31
CCDC88BA6NC98 AL133373.1-201ENST00000497098 94 ntBASIC0.61□□□□□ -2.31
CCDC88BA6NC98 AC021785.1-201ENST00000520780 453 ntTSL 3 BASIC0.61□□□□□ -2.31
CCDC88BA6NC98 AC090124.1-201ENST00000525097 448 ntTSL 3 BASIC0.61□□□□□ -2.31
CCDC88BA6NC98 LINC02301-201ENST00000553760 773 ntTSL 3 BASIC0.61□□□□□ -2.31
CCDC88BA6NC98 AC010620.1-201ENST00000601088 1102 ntBASIC0.61□□□□□ -2.31
CCDC88BA6NC98 AC010809.3-201ENST00000621310 641 ntBASIC0.61□□□□□ -2.31
CCDC88BA6NC98 AL136372.1-201ENST00000403060 228 ntBASIC0.6□□□□□ -2.31
CCDC88BA6NC98 PIGFP2-201ENST00000421400 651 ntBASIC0.6□□□□□ -2.31
CCDC88BA6NC98 AC004594.1-217ENST00000422260 325 ntTSL 2 BASIC0.6□□□□□ -2.31
CCDC88BA6NC98 AC114808.2-201ENST00000428335 536 ntTSL 4 BASIC0.6□□□□□ -2.31
CCDC88BA6NC98 TH2LCRR-202ENST00000435042 472 ntTSL 5 BASIC0.6□□□□□ -2.31
CCDC88BA6NC98 ACBD3-AS1-201ENST00000440540 535 ntTSL 5 BASIC0.6□□□□□ -2.31
CCDC88BA6NC98 NDUFAF4P1-201ENST00000559425 519 ntBASIC0.6□□□□□ -2.31
CCDC88BA6NC98 AC004492.1-201ENST00000607036 742 ntBASIC0.6□□□□□ -2.31
CCDC88BA6NC98 KIF20B-201ENST00000260753 6306 ntAPPRIS P3 TSL 1 (best) BASIC0.59□□□□□ -2.32
CCDC88BA6NC98 RNA5SP299-201ENST00000391203 116 ntBASIC0.59□□□□□ -2.32
CCDC88BA6NC98 AL031577.2-201ENST00000404133 280 ntBASIC0.59□□□□□ -2.32
CCDC88BA6NC98 SNORA81-201ENST00000408493 178 ntBASIC0.59□□□□□ -2.32
CCDC88BA6NC98 AC023141.4-201ENST00000412031 328 ntBASIC0.59□□□□□ -2.32
CCDC88BA6NC98 LINC01347-201ENST00000417964 355 ntBASIC0.59□□□□□ -2.32
CCDC88BA6NC98 AL449283.1-202ENST00000418249 604 ntBASIC0.59□□□□□ -2.32
CCDC88BA6NC98 MYCBP2-AS2-201ENST00000428716 428 ntTSL 5 BASIC0.59□□□□□ -2.32
CCDC88BA6NC98 AL135790.2-201ENST00000437701 267 ntBASIC0.59□□□□□ -2.32
CCDC88BA6NC98 AC004485.1-201ENST00000439839 527 ntTSL 5 BASIC0.59□□□□□ -2.32
CCDC88BA6NC98 GTF2IP12-201ENST00000456547 356 ntBASIC0.59□□□□□ -2.32
CCDC88BA6NC98 VPS26A-206ENST00000489794 928 ntTSL 3 BASIC0.59□□□□□ -2.32
CCDC88BA6NC98 AC090115.3-201ENST00000553218 849 ntBASIC0.59□□□□□ -2.32
CCDC88BA6NC98 MIR4661-201ENST00000582720 75 ntBASIC0.59□□□□□ -2.32
CCDC88BA6NC98 ZNF92P3-201ENST00000596594 954 ntBASIC0.59□□□□□ -2.32
CCDC88BA6NC98 AC146944.4-201ENST00000602697 718 ntBASIC0.59□□□□□ -2.32
CCDC88BA6NC98 AC021171.1-201ENST00000603137 706 ntBASIC0.59□□□□□ -2.32
CCDC88BA6NC98 BX322635.1-201ENST00000605804 496 ntBASIC0.59□□□□□ -2.32
CCDC88BA6NC98 DLEU1_2.1-201ENST00000617920 342 ntBASIC0.59□□□□□ -2.32
CCDC88BA6NC98 AC002550.2-201ENST00000621246 394 ntBASIC0.59□□□□□ -2.32
CCDC88BA6NC98 Z99571.1-201ENST00000636677 394 ntBASIC0.59□□□□□ -2.32
CCDC88BA6NC98 TBC1D31-206ENST00000518805 2201 ntTSL 2 BASIC0.58□□□□□ -2.32
CCDC88BA6NC98 OR5T3-201ENST00000303059 1023 ntBASIC0.58□□□□□ -2.32
CCDC88BA6NC98 U3.8-201ENST00000363675 217 ntBASIC0.58□□□□□ -2.32
CCDC88BA6NC98 RNU6-26P-201ENST00000383985 107 ntBASIC0.58□□□□□ -2.32
CCDC88BA6NC98 SNORA29-201ENST00000384183 140 ntBASIC0.58□□□□□ -2.32
CCDC88BA6NC98 RNU6-185P-201ENST00000384421 107 ntBASIC0.58□□□□□ -2.32
CCDC88BA6NC98 AC097463.2-201ENST00000421074 142 ntBASIC0.58□□□□□ -2.32
CCDC88BA6NC98 OFD1P2Y-201ENST00000421895 1149 ntBASIC0.58□□□□□ -2.32
CCDC88BA6NC98 RPL26P9-201ENST00000457466 433 ntBASIC0.58□□□□□ -2.32
CCDC88BA6NC98 NUCB2-202ENST00000458064 1279 ntTSL 1 (best) BASIC0.58□□□□□ -2.32
CCDC88BA6NC98 AC034114.1-201ENST00000520293 285 ntBASIC0.58□□□□□ -2.32
CCDC88BA6NC98 MRPL42-203ENST00000547098 701 ntTSL 3 BASIC0.58□□□□□ -2.32
CCDC88BA6NC98 AL359212.1-201ENST00000556608 614 ntBASIC0.58□□□□□ -2.32
Retrieved 100 of 98,524 protein–RNA pairs in 97.8 ms