Protein–RNA interactions for Protein: Q9Y239

NOD1, Nucleotide-binding oligomerization domain-containing protein 1, humanhuman

Predictions only

Length 953 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NOD1Q9Y239 ANXA1-202ENST00000376911 2209 ntAPPRIS P1 TSL 1 (best) BASIC5.03□□□□□ -1.6
NOD1Q9Y239 TEX9-207ENST00000560582 2005 ntTSL 3 BASIC5.02□□□□□ -1.61
NOD1Q9Y239 FANCD2-202ENST00000383807 5102 ntAPPRIS ALT2 TSL 1 (best) BASIC5.02□□□□□ -1.61
NOD1Q9Y239 LINC01902-202ENST00000636983 4607 ntTSL 5 BASIC5.02□□□□□ -1.61
NOD1Q9Y239 ANO3-204ENST00000531568 3117 ntAPPRIS ALT2 TSL 2 BASIC5.02□□□□□ -1.61
NOD1Q9Y239 ZNF117-201ENST00000282869 9080 ntAPPRIS P1 TSL 1 (best) BASIC5.02□□□□□ -1.61
NOD1Q9Y239 SKIL-201ENST00000259119 3057 ntAPPRIS P1 TSL 1 (best) BASIC5.02□□□□□ -1.61
NOD1Q9Y239 AC091534.1-201ENST00000548779 1751 ntTSL 2 BASIC5.02□□□□□ -1.61
NOD1Q9Y239 ADAM5-202ENST00000399789 1942 ntBASIC5.02□□□□□ -1.61
NOD1Q9Y239 SNORA19-201ENST00000384737 128 ntBASIC5.02□□□□□ -1.61
NOD1Q9Y239 U3.37-201ENST00000408528 213 ntBASIC5.02□□□□□ -1.61
NOD1Q9Y239 RNA5SP31-201ENST00000411144 127 ntBASIC5.02□□□□□ -1.61
NOD1Q9Y239 AC005828.1-201ENST00000431604 524 ntTSL 5 BASIC5.02□□□□□ -1.61
NOD1Q9Y239 AC007389.2-201ENST00000434630 306 ntBASIC5.02□□□□□ -1.61
NOD1Q9Y239 AL451050.1-201ENST00000450126 415 ntBASIC5.02□□□□□ -1.61
NOD1Q9Y239 Y_RNA.644-201ENST00000459006 113 ntBASIC5.02□□□□□ -1.61
NOD1Q9Y239 Y_RNA.674-201ENST00000516362 113 ntBASIC5.02□□□□□ -1.61
NOD1Q9Y239 MDM2-232ENST00000544561 213 ntTSL 5 BASIC5.02□□□□□ -1.61
NOD1Q9Y239 AC097372.5-201ENST00000623665 376 ntBASIC5.02□□□□□ -1.61
NOD1Q9Y239 AC241585.2-209ENST00000638217 143 ntBASIC5.02□□□□□ -1.61
NOD1Q9Y239 AC027290.2-201ENST00000623210 18662 ntBASIC5.02□□□□□ -1.61
NOD1Q9Y239 OBSCN-210ENST00000570156 26925 ntAPPRIS P1 TSL 5 BASIC5.02□□□□□ -1.61
NOD1Q9Y239 AC011604.2-202ENST00000540229 2451 ntAPPRIS P5 TSL 2 BASIC5.02□□□□□ -1.61
NOD1Q9Y239 POLR2B-203ENST00000431623 3666 ntTSL 2 BASIC5.02□□□□□ -1.61
NOD1Q9Y239 NBPF10-202ENST00000617010 11630 ntTSL 5 BASIC5.02□□□□□ -1.61
NOD1Q9Y239 CHD9-221ENST00000615216 10603 ntTSL 5 BASIC5.02□□□□□ -1.61
NOD1Q9Y239 FBXO38-218ENST00000513826 3585 ntTSL 1 (best) BASIC5.01□□□□□ -1.61
NOD1Q9Y239 KCNJ6-201ENST00000609713 19645 ntAPPRIS P1 TSL 1 (best) BASIC5.01□□□□□ -1.61
NOD1Q9Y239 KIF2A-205ENST00000506857 2219 ntTSL 2 BASIC5.01□□□□□ -1.61
NOD1Q9Y239 MGAT4C-207ENST00000552808 1937 ntAPPRIS P1 TSL 2 BASIC5.01□□□□□ -1.61
NOD1Q9Y239 ZNF616-204ENST00000600228 4335 ntAPPRIS P1 TSL 1 (best) BASIC5.01□□□□□ -1.61
NOD1Q9Y239 RASA1-203ENST00000506290 3009 ntAPPRIS ALT2 TSL 2 BASIC5.01□□□□□ -1.61
NOD1Q9Y239 MPDZ-211ENST00000536827 6176 ntAPPRIS ALT2 TSL 1 (best) BASIC5.01□□□□□ -1.61
NOD1Q9Y239 AASDH-201ENST00000205214 3590 ntAPPRIS P1 TSL 1 (best) BASIC5.01□□□□□ -1.61
NOD1Q9Y239 ETV1-205ENST00000405192 4402 ntTSL 1 (best) BASIC5.01□□□□□ -1.61
NOD1Q9Y239 RNU6-1279P-201ENST00000383917 103 ntBASIC5.01□□□□□ -1.61
NOD1Q9Y239 RNU6-17P-201ENST00000384245 107 ntBASIC5.01□□□□□ -1.61
NOD1Q9Y239 RNU6-18P-201ENST00000384527 107 ntBASIC5.01□□□□□ -1.61
NOD1Q9Y239 SNORA48.7-201ENST00000391302 135 ntBASIC5.01□□□□□ -1.61
NOD1Q9Y239 AP000235.1-201ENST00000424017 479 ntTSL 3 BASIC5.01□□□□□ -1.61
NOD1Q9Y239 AP000907.1-201ENST00000428428 510 ntBASIC5.01□□□□□ -1.61
NOD1Q9Y239 AC105940.1-201ENST00000434265 353 ntTSL 3 BASIC5.01□□□□□ -1.61
NOD1Q9Y239 AL353705.4-201ENST00000449661 238 ntBASIC5.01□□□□□ -1.61
NOD1Q9Y239 AC010974.1-201ENST00000450509 374 ntTSL 3 BASIC5.01□□□□□ -1.61
NOD1Q9Y239 WDR49-207ENST00000479765 2108 ntTSL 2 BASIC5.01□□□□□ -1.61
NOD1Q9Y239 RPL31P13-201ENST00000484151 370 ntBASIC5.01□□□□□ -1.61
NOD1Q9Y239 SNORA43.2-201ENST00000516652 128 ntBASIC5.01□□□□□ -1.61
NOD1Q9Y239 AC010197.1-201ENST00000541860 578 ntTSL 4 BASIC5.01□□□□□ -1.61
NOD1Q9Y239 UTS2-201ENST00000054668 420 ntAPPRIS P4 TSL 1 (best) BASIC5.01□□□□□ -1.61
NOD1Q9Y239 AC024909.1-201ENST00000549278 599 ntTSL 4 BASIC5.01□□□□□ -1.61
NOD1Q9Y239 RN7SL176P-201ENST00000580352 264 ntBASIC5.01□□□□□ -1.61
NOD1Q9Y239 BRDTP1-201ENST00000605735 677 ntBASIC5.01□□□□□ -1.61
NOD1Q9Y239 SKP1-202ENST00000353411 9474 ntAPPRIS P4 TSL 1 (best) BASIC5.01□□□□□ -1.61
NOD1Q9Y239 WDR7-201ENST00000254442 14083 ntAPPRIS P1 TSL 1 (best) BASIC5.01□□□□□ -1.61
NOD1Q9Y239 OXR1-206ENST00000449762 2621 ntTSL 1 (best) BASIC5.01□□□□□ -1.61
NOD1Q9Y239 AL445623.2-201ENST00000640307 4805 ntTSL 1 (best) BASIC5.01□□□□□ -1.61
NOD1Q9Y239 KLHL13-201ENST00000262820 3972 ntAPPRIS P3 TSL 1 (best) BASIC5.01□□□□□ -1.61
NOD1Q9Y239 CEP162-207ENST00000617909 5095 ntTSL 5 BASIC5□□□□□ -1.61
NOD1Q9Y239 AC083843.3-201ENST00000623679 2186 ntBASIC5□□□□□ -1.61
NOD1Q9Y239 POLR2B-213ENST00000639658 3300 ntTSL 5 BASIC5□□□□□ -1.61
NOD1Q9Y239 RNU4-90P-201ENST00000362773 141 ntBASIC5□□□□□ -1.61
NOD1Q9Y239 Y_RNA.199-201ENST00000364014 102 ntBASIC5□□□□□ -1.61
NOD1Q9Y239 RNU6-290P-201ENST00000365212 101 ntBASIC5□□□□□ -1.61
NOD1Q9Y239 RNU6-926P-201ENST00000384075 107 ntBASIC5□□□□□ -1.61
NOD1Q9Y239 RNU6-746P-201ENST00000384112 109 ntBASIC5□□□□□ -1.61
NOD1Q9Y239 SNORA37-201ENST00000384504 129 ntBASIC5□□□□□ -1.61
NOD1Q9Y239 PCNPP3-201ENST00000393579 471 ntBASIC5□□□□□ -1.61
NOD1Q9Y239 AL033519.2-201ENST00000403958 392 ntBASIC5□□□□□ -1.61
NOD1Q9Y239 RAB9AP3-201ENST00000412737 573 ntBASIC5□□□□□ -1.61
NOD1Q9Y239 CYCSP32-201ENST00000440548 321 ntBASIC5□□□□□ -1.61
NOD1Q9Y239 AC007099.2-201ENST00000444852 336 ntTSL 5 BASIC5□□□□□ -1.61
NOD1Q9Y239 RAB9AP1-201ENST00000449393 573 ntBASIC5□□□□□ -1.61
NOD1Q9Y239 NDUFA6-201ENST00000470753 475 ntTSL 2 BASIC5□□□□□ -1.61
NOD1Q9Y239 AC091167.1-201ENST00000492017 396 ntBASIC5□□□□□ -1.61
NOD1Q9Y239 UBE2CP3-201ENST00000502715 450 ntBASIC5□□□□□ -1.61
NOD1Q9Y239 HMGB3P16-201ENST00000508037 287 ntBASIC5□□□□□ -1.61
NOD1Q9Y239 AC008957.1-201ENST00000510740 478 ntTSL 3 BASIC5□□□□□ -1.61
NOD1Q9Y239 RNU6-1073P-201ENST00000517182 106 ntBASIC5□□□□□ -1.61
NOD1Q9Y239 IGHVII-62-1-201ENST00000519283 235 ntBASIC5□□□□□ -1.61
NOD1Q9Y239 SNHG1-218ENST00000541615 748 ntTSL 5 BASIC5□□□□□ -1.61
NOD1Q9Y239 LINC01479-202ENST00000546170 444 ntTSL 2 BASIC5□□□□□ -1.61
NOD1Q9Y239 AC107016.1-201ENST00000550463 337 ntBASIC5□□□□□ -1.61
NOD1Q9Y239 CYCSP39-201ENST00000565821 309 ntBASIC5□□□□□ -1.61
NOD1Q9Y239 AC106785.1-201ENST00000565935 262 ntBASIC5□□□□□ -1.61
NOD1Q9Y239 LINC01533-205ENST00000593056 607 ntTSL 3 BASIC5□□□□□ -1.61
NOD1Q9Y239 AC107031.1-201ENST00000604939 347 ntTSL 2 BASIC5□□□□□ -1.61
NOD1Q9Y239 RPL23AP88-201ENST00000605759 454 ntBASIC5□□□□□ -1.61
NOD1Q9Y239 AC091903.1-201ENST00000624322 454 ntBASIC5□□□□□ -1.61
NOD1Q9Y239 AC127459.3-201ENST00000624328 466 ntBASIC5□□□□□ -1.61
NOD1Q9Y239 MIR3653-201ENST00000625572 110 ntBASIC5□□□□□ -1.61
NOD1Q9Y239 hsa-mir-4536-1.1-201ENST00000636519 88 ntBASIC5□□□□□ -1.61
NOD1Q9Y239 AC125257.1-201ENST00000560400 2930 ntBASIC5□□□□□ -1.61
NOD1Q9Y239 XIST-204ENST00000429829 19275 ntTSL 1 (best) BASIC5□□□□□ -1.61
NOD1Q9Y239 SYTL2-217ENST00000528231 3536 ntAPPRIS ALT1 TSL 1 (best) BASIC5□□□□□ -1.61
NOD1Q9Y239 AMY2A-201ENST00000414303 1634 ntAPPRIS P1 TSL 1 (best) BASIC5□□□□□ -1.61
NOD1Q9Y239 USP8-201ENST00000307179 4243 ntAPPRIS P1 TSL 1 (best) BASIC5□□□□□ -1.61
NOD1Q9Y239 CNGB3-201ENST00000320005 4347 ntAPPRIS P1 TSL 1 (best) BASIC5□□□□□ -1.61
NOD1Q9Y239 PLCB4-203ENST00000378493 5796 ntAPPRIS ALT1 TSL 2 BASIC5□□□□□ -1.61
NOD1Q9Y239 PCDH15-203ENST00000373955 4230 ntTSL 1 (best) BASIC4.99□□□□□ -1.61
NOD1Q9Y239 MROH9-202ENST00000367759 3165 ntAPPRIS ALT2 TSL 5 BASIC4.99□□□□□ -1.61
Retrieved 100 of 98,524 protein–RNA pairs in 127.5 ms