Protein–RNA interactions for Protein: Q9HD42

CHMP1A, Charged multivesicular body protein 1a, humanhuman

Predicted RBP Predictions only

Length 196 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP1AQ9HD42 CNOT1-223ENST00000628857 291 ntTSL 5 BASIC2.77□□□□□ -1.97
CHMP1AQ9HD42 THNSL1-201ENST00000376356 3691 ntAPPRIS P1 TSL 1 (best) BASIC2.77□□□□□ -1.97
CHMP1AQ9HD42 TFEC-202ENST00000320239 6605 ntAPPRIS P1 TSL 1 (best) BASIC2.77□□□□□ -1.97
CHMP1AQ9HD42 AC099654.7-201ENST00000635788 2127 ntBASIC2.77□□□□□ -1.97
CHMP1AQ9HD42 FGF14-201ENST00000376131 12882 ntTSL 1 (best) BASIC2.76□□□□□ -1.97
CHMP1AQ9HD42 RTKN2-202ENST00000373789 6641 ntAPPRIS P1 TSL 1 (best) BASIC2.76□□□□□ -1.97
CHMP1AQ9HD42 AL353743.1-202ENST00000431724 1695 ntBASIC2.76□□□□□ -1.97
CHMP1AQ9HD42 BCLAF1-205ENST00000527536 5371 ntTSL 5 BASIC2.76□□□□□ -1.97
CHMP1AQ9HD42 RNU6-1090P-201ENST00000364065 94 ntBASIC2.76□□□□□ -1.97
CHMP1AQ9HD42 RNU6-393P-201ENST00000384475 107 ntBASIC2.76□□□□□ -1.97
CHMP1AQ9HD42 SNORA46-201ENST00000384762 135 ntBASIC2.76□□□□□ -1.97
CHMP1AQ9HD42 MIR10A-201ENST00000385043 110 ntBASIC2.76□□□□□ -1.97
CHMP1AQ9HD42 MIR548F1-201ENST00000408667 84 ntBASIC2.76□□□□□ -1.97
CHMP1AQ9HD42 RNU6-193P-201ENST00000410977 107 ntBASIC2.76□□□□□ -1.97
CHMP1AQ9HD42 RPL19P1-201ENST00000411635 428 ntBASIC2.76□□□□□ -1.97
CHMP1AQ9HD42 CYCSP19-201ENST00000411715 316 ntBASIC2.76□□□□□ -1.97
CHMP1AQ9HD42 AL513365.2-201ENST00000423060 529 ntTSL 2 BASIC2.76□□□□□ -1.97
CHMP1AQ9HD42 LINC02541-201ENST00000427157 327 ntTSL 3 BASIC2.76□□□□□ -1.97
CHMP1AQ9HD42 AC091286.1-201ENST00000431233 461 ntBASIC2.76□□□□□ -1.97
CHMP1AQ9HD42 AL161651.1-201ENST00000440882 223 ntBASIC2.76□□□□□ -1.97
CHMP1AQ9HD42 AL359771.1-201ENST00000441809 379 ntTSL 5 BASIC2.76□□□□□ -1.97
CHMP1AQ9HD42 RPL39P40-201ENST00000445481 146 ntBASIC2.76□□□□□ -1.97
CHMP1AQ9HD42 AL157882.1-201ENST00000447148 429 ntTSL 3 BASIC2.76□□□□□ -1.97
CHMP1AQ9HD42 NDUFAF4P4-201ENST00000454883 502 ntBASIC2.76□□□□□ -1.97
CHMP1AQ9HD42 AC100773.1-201ENST00000505409 520 ntTSL 5 BASIC2.76□□□□□ -1.97
CHMP1AQ9HD42 AC008539.1-201ENST00000507653 482 ntTSL 3 BASIC2.76□□□□□ -1.97
CHMP1AQ9HD42 LINC02494-201ENST00000509824 427 ntTSL 3 BASIC2.76□□□□□ -1.97
CHMP1AQ9HD42 AC113155.1-201ENST00000511141 769 ntBASIC2.76□□□□□ -1.97
CHMP1AQ9HD42 MEPE-206ENST00000511670 550 ntTSL 4 BASIC2.76□□□□□ -1.97
CHMP1AQ9HD42 LRRC34P2-201ENST00000514850 553 ntBASIC2.76□□□□□ -1.97
CHMP1AQ9HD42 RNU6-1281P-201ENST00000516223 105 ntBASIC2.76□□□□□ -1.97
CHMP1AQ9HD42 RNU1-95P-201ENST00000516357 160 ntBASIC2.76□□□□□ -1.97
CHMP1AQ9HD42 MIR892C-201ENST00000516410 77 ntBASIC2.76□□□□□ -1.97
CHMP1AQ9HD42 RNU1-128P-201ENST00000516704 160 ntBASIC2.76□□□□□ -1.97
CHMP1AQ9HD42 OR5AQ1P-201ENST00000527596 927 ntBASIC2.76□□□□□ -1.97
CHMP1AQ9HD42 ZNF519P2-201ENST00000557032 169 ntBASIC2.76□□□□□ -1.97
CHMP1AQ9HD42 LINC02253-201ENST00000559321 448 ntTSL 2 BASIC2.76□□□□□ -1.97
CHMP1AQ9HD42 AC027807.1-201ENST00000559921 996 ntBASIC2.76□□□□□ -1.97
CHMP1AQ9HD42 AL138976.2-201ENST00000563989 694 ntBASIC2.76□□□□□ -1.97
CHMP1AQ9HD42 ZNF788-206ENST00000596883 692 ntTSL 3 BASIC2.76□□□□□ -1.97
CHMP1AQ9HD42 AC091152.3-201ENST00000604227 325 ntBASIC2.76□□□□□ -1.97
CHMP1AQ9HD42 AL035413.2-201ENST00000604801 525 ntBASIC2.76□□□□□ -1.97
CHMP1AQ9HD42 AC087045.1-201ENST00000605856 382 ntBASIC2.76□□□□□ -1.97
CHMP1AQ9HD42 AC103858.1-201ENST00000607019 476 ntTSL 3 BASIC2.76□□□□□ -1.97
CHMP1AQ9HD42 AC122108.2-201ENST00000611946 526 ntBASIC2.76□□□□□ -1.97
CHMP1AQ9HD42 AL157817.1-201ENST00000614264 790 ntBASIC2.76□□□□□ -1.97
CHMP1AQ9HD42 CR392039.5-201ENST00000623201 510 ntBASIC2.76□□□□□ -1.97
CHMP1AQ9HD42 AC068137.3-201ENST00000639191 341 ntBASIC2.76□□□□□ -1.97
CHMP1AQ9HD42 AC073869.6-201ENST00000640656 341 ntBASIC2.76□□□□□ -1.97
CHMP1AQ9HD42 AP003122.5-201ENST00000527668 3766 ntBASIC2.76□□□□□ -1.97
CHMP1AQ9HD42 UHMK1-204ENST00000545294 8117 ntTSL 2 BASIC2.76□□□□□ -1.97
CHMP1AQ9HD42 AL161431.1-201ENST00000618966 4205 ntBASIC2.76□□□□□ -1.97
CHMP1AQ9HD42 Z83843.1-201ENST00000604070 3685 ntBASIC2.76□□□□□ -1.97
CHMP1AQ9HD42 KLRA1P-202ENST00000510134 1410 ntTSL 5 BASIC2.76□□□□□ -1.97
CHMP1AQ9HD42 MTND4P14-201ENST00000435799 1354 ntBASIC2.75□□□□□ -1.97
CHMP1AQ9HD42 MTND5P1-201ENST00000445440 1375 ntBASIC2.75□□□□□ -1.97
CHMP1AQ9HD42 BCLAF1P1-201ENST00000505813 2752 ntBASIC2.75□□□□□ -1.97
CHMP1AQ9HD42 IKZF2-213ENST00000457361 9350 ntTSL 5 BASIC2.75□□□□□ -1.97
CHMP1AQ9HD42 Y_RNA.6-201ENST00000362350 114 ntBASIC2.75□□□□□ -1.97
CHMP1AQ9HD42 AIF1-202ENST00000376049 524 ntTSL 1 (best) BASIC2.75□□□□□ -1.97
CHMP1AQ9HD42 FAM107B-204ENST00000378465 1052 ntAPPRIS P1 TSL 2 BASIC2.75□□□□□ -1.97
CHMP1AQ9HD42 SNORD21-201ENST00000383953 95 ntBASIC2.75□□□□□ -1.97
CHMP1AQ9HD42 SNORA5A-201ENST00000384111 134 ntBASIC2.75□□□□□ -1.97
CHMP1AQ9HD42 SNORD17-201ENST00000390930 237 ntBASIC2.75□□□□□ -1.97
CHMP1AQ9HD42 RPS4XP7-201ENST00000406274 780 ntBASIC2.75□□□□□ -1.97
CHMP1AQ9HD42 RNU6-908P-201ENST00000410160 94 ntBASIC2.75□□□□□ -1.97
CHMP1AQ9HD42 Y_RNA.599-201ENST00000410489 109 ntBASIC2.75□□□□□ -1.97
CHMP1AQ9HD42 RAB28P1-201ENST00000411517 641 ntBASIC2.75□□□□□ -1.97
CHMP1AQ9HD42 RAB9AP3-201ENST00000412737 573 ntBASIC2.75□□□□□ -1.97
CHMP1AQ9HD42 AC093157.2-201ENST00000414686 671 ntTSL 5 BASIC2.75□□□□□ -1.97
CHMP1AQ9HD42 AC096649.2-201ENST00000416186 393 ntBASIC2.75□□□□□ -1.97
CHMP1AQ9HD42 ATG3P1-201ENST00000419507 911 ntBASIC2.75□□□□□ -1.97
CHMP1AQ9HD42 AL358075.3-201ENST00000426289 226 ntBASIC2.75□□□□□ -1.97
CHMP1AQ9HD42 ATP5JP1-201ENST00000431631 322 ntBASIC2.75□□□□□ -1.97
CHMP1AQ9HD42 AL157937.1-201ENST00000435092 443 ntTSL 3 BASIC2.75□□□□□ -1.97
CHMP1AQ9HD42 AC092802.2-202ENST00000444665 371 ntTSL 5 BASIC2.75□□□□□ -1.97
CHMP1AQ9HD42 RAB9AP1-201ENST00000449393 573 ntBASIC2.75□□□□□ -1.97
CHMP1AQ9HD42 AL353780.1-201ENST00000455583 458 ntTSL 2 BASIC2.75□□□□□ -1.97
CHMP1AQ9HD42 BTF3P15-201ENST00000455606 336 ntBASIC2.75□□□□□ -1.97
CHMP1AQ9HD42 snoU109.2-201ENST00000459316 135 ntBASIC2.75□□□□□ -1.97
CHMP1AQ9HD42 AC107626.1-201ENST00000471084 183 ntBASIC2.75□□□□□ -1.97
CHMP1AQ9HD42 RN7SL601P-201ENST00000471221 293 ntBASIC2.75□□□□□ -1.97
CHMP1AQ9HD42 AC022272.1-201ENST00000503478 777 ntTSL 2 BASIC2.75□□□□□ -1.97
CHMP1AQ9HD42 AC116655.1-201ENST00000508324 901 ntBASIC2.75□□□□□ -1.97
CHMP1AQ9HD42 AC114316.1-201ENST00000511323 278 ntTSL 5 BASIC2.75□□□□□ -1.97
CHMP1AQ9HD42 AC074344.1-201ENST00000512823 224 ntBASIC2.75□□□□□ -1.97
CHMP1AQ9HD42 IGKV2-26-201ENST00000518305 343 ntBASIC2.75□□□□□ -1.97
CHMP1AQ9HD42 FAM92A-209ENST00000519679 538 ntTSL 4 BASIC2.75□□□□□ -1.97
CHMP1AQ9HD42 AL157687.1-201ENST00000554853 619 ntBASIC2.75□□□□□ -1.97
CHMP1AQ9HD42 MTCO3P23-201ENST00000561363 289 ntBASIC2.75□□□□□ -1.97
CHMP1AQ9HD42 AC025271.3-201ENST00000563031 255 ntTSL 5 BASIC2.75□□□□□ -1.97
CHMP1AQ9HD42 AC120045.1-201ENST00000563502 251 ntTSL 3 BASIC2.75□□□□□ -1.97
CHMP1AQ9HD42 AC139426.2-201ENST00000568289 251 ntTSL 3 BASIC2.75□□□□□ -1.97
CHMP1AQ9HD42 MIR4276-201ENST00000584832 70 ntBASIC2.75□□□□□ -1.97
CHMP1AQ9HD42 AC015911.6-201ENST00000588445 457 ntTSL 3 BASIC2.75□□□□□ -1.97
CHMP1AQ9HD42 AC020895.1-201ENST00000595362 272 ntBASIC2.75□□□□□ -1.97
CHMP1AQ9HD42 AL391813.1-201ENST00000603098 260 ntBASIC2.75□□□□□ -1.97
CHMP1AQ9HD42 RPL23AP88-201ENST00000605759 454 ntBASIC2.75□□□□□ -1.97
CHMP1AQ9HD42 ESRRAP2-204ENST00000606337 280 ntTSL 5 BASIC2.75□□□□□ -1.97
CHMP1AQ9HD42 AC107871.2-201ENST00000612894 502 ntBASIC2.75□□□□□ -1.97
Retrieved 100 of 98,524 protein–RNA pairs in 100.9 ms