Protein–RNA interactions for Protein: Q9HCM9

TRIM39, E3 ubiquitin-protein ligase TRIM39, humanhuman

Predictions only

Length 518 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM39Q9HCM9 USP9YP30-201ENST00000430729 455 ntBASIC3.99□□□□□ -1.77
TRIM39Q9HCM9 NOTCH2P1-201ENST00000443481 624 ntBASIC3.99□□□□□ -1.77
TRIM39Q9HCM9 MTND4P19-201ENST00000446659 478 ntBASIC3.99□□□□□ -1.77
TRIM39Q9HCM9 BTF3P15-201ENST00000455606 336 ntBASIC3.99□□□□□ -1.77
TRIM39Q9HCM9 LINC01510-203ENST00000458082 626 ntTSL 3 BASIC3.99□□□□□ -1.77
TRIM39Q9HCM9 U8.21-201ENST00000459536 136 ntBASIC3.99□□□□□ -1.77
TRIM39Q9HCM9 AC113155.1-201ENST00000511141 769 ntBASIC3.99□□□□□ -1.77
TRIM39Q9HCM9 ACA59.1-201ENST00000515966 143 ntBASIC3.99□□□□□ -1.77
TRIM39Q9HCM9 RNU6-976P-201ENST00000516086 111 ntBASIC3.99□□□□□ -1.77
TRIM39Q9HCM9 RNU6-1213P-201ENST00000517075 94 ntBASIC3.99□□□□□ -1.77
TRIM39Q9HCM9 LINC00933-203ENST00000559812 219 ntBASIC3.99□□□□□ -1.77
TRIM39Q9HCM9 LINC02079-201ENST00000582518 294 ntTSL 2 BASIC3.99□□□□□ -1.77
TRIM39Q9HCM9 MIR3609-201ENST00000582661 80 ntBASIC3.99□□□□□ -1.77
TRIM39Q9HCM9 TTN-AS1-212ENST00000582847 1036 ntTSL 5 BASIC3.99□□□□□ -1.77
TRIM39Q9HCM9 AC022432.1-201ENST00000595739 310 ntBASIC3.99□□□□□ -1.77
TRIM39Q9HCM9 AC018889.1-201ENST00000605372 397 ntBASIC3.99□□□□□ -1.77
TRIM39Q9HCM9 AL121917.1-203ENST00000605534 577 ntBASIC3.99□□□□□ -1.77
TRIM39Q9HCM9 HMGB1P50-201ENST00000605814 607 ntBASIC3.99□□□□□ -1.77
TRIM39Q9HCM9 AC004852.3-201ENST00000614131 326 ntBASIC3.99□□□□□ -1.77
TRIM39Q9HCM9 uc_338.32-201ENST00000615087 172 ntBASIC3.99□□□□□ -1.77
TRIM39Q9HCM9 AL161629.2-201ENST00000615347 275 ntBASIC3.99□□□□□ -1.77
TRIM39Q9HCM9 AC073308.1-201ENST00000623696 305 ntBASIC3.99□□□□□ -1.77
TRIM39Q9HCM9 MAPK10-373ENST00000641983 6772 ntBASIC3.99□□□□□ -1.77
TRIM39Q9HCM9 MUC15-205ENST00000529533 2084 ntTSL 1 (best) BASIC3.99□□□□□ -1.77
TRIM39Q9HCM9 CNGA1-201ENST00000358519 2627 ntAPPRIS P3 TSL 1 (best) BASIC3.99□□□□□ -1.77
TRIM39Q9HCM9 CEP170-215ENST00000481987 3031 ntTSL 5 BASIC3.99□□□□□ -1.77
TRIM39Q9HCM9 AL033397.1-201ENST00000502390 3653 ntTSL 2 BASIC3.99□□□□□ -1.77
TRIM39Q9HCM9 PREPL-207ENST00000409957 4703 ntTSL 5 BASIC3.99□□□□□ -1.77
TRIM39Q9HCM9 KCNJ16-201ENST00000283936 4062 ntAPPRIS P1 TSL 1 (best) BASIC3.98□□□□□ -1.77
TRIM39Q9HCM9 DAZ4-206ENST00000449750 3271 ntTSL 5 BASIC3.98□□□□□ -1.77
TRIM39Q9HCM9 RNU1-73P-201ENST00000383971 164 ntBASIC3.98□□□□□ -1.77
TRIM39Q9HCM9 RNU6-1040P-201ENST00000383974 107 ntBASIC3.98□□□□□ -1.77
TRIM39Q9HCM9 RNU6-474P-201ENST00000384243 107 ntBASIC3.98□□□□□ -1.77
TRIM39Q9HCM9 SNORA75.6-201ENST00000391318 127 ntBASIC3.98□□□□□ -1.77
TRIM39Q9HCM9 FBXO11-201ENST00000402508 3844 ntAPPRIS P1 TSL 1 (best) BASIC3.98□□□□□ -1.77
TRIM39Q9HCM9 MIR1193-201ENST00000408109 78 ntBASIC3.98□□□□□ -1.77
TRIM39Q9HCM9 NDUFS5P4-201ENST00000412983 318 ntBASIC3.98□□□□□ -1.77
TRIM39Q9HCM9 AL691449.1-201ENST00000426570 421 ntBASIC3.98□□□□□ -1.77
TRIM39Q9HCM9 LINC01757-201ENST00000435552 480 ntTSL 2 BASIC3.98□□□□□ -1.77
TRIM39Q9HCM9 AL356859.1-201ENST00000449180 414 ntTSL 5 BASIC3.98□□□□□ -1.77
TRIM39Q9HCM9 RPL9P32-201ENST00000464118 620 ntBASIC3.98□□□□□ -1.77
TRIM39Q9HCM9 AC008571.1-201ENST00000467232 300 ntBASIC3.98□□□□□ -1.77
TRIM39Q9HCM9 RPL23AP45-201ENST00000476406 468 ntBASIC3.98□□□□□ -1.77
TRIM39Q9HCM9 RPL7P42-201ENST00000481005 679 ntBASIC3.98□□□□□ -1.77
TRIM39Q9HCM9 AC114801.2-201ENST00000503825 781 ntBASIC3.98□□□□□ -1.77
TRIM39Q9HCM9 AC025554.1-201ENST00000505641 188 ntBASIC3.98□□□□□ -1.77
TRIM39Q9HCM9 AC006445.2-201ENST00000510061 472 ntBASIC3.98□□□□□ -1.77
TRIM39Q9HCM9 RNU6-1183P-201ENST00000517054 60 ntBASIC3.98□□□□□ -1.77
TRIM39Q9HCM9 LINC02425-201ENST00000536217 376 ntTSL 3 BASIC3.98□□□□□ -1.77
TRIM39Q9HCM9 NACAP3-201ENST00000552100 481 ntBASIC3.98□□□□□ -1.77
TRIM39Q9HCM9 LINC02277-201ENST00000553386 453 ntTSL 2 BASIC3.98□□□□□ -1.77
TRIM39Q9HCM9 AMZ2P1-203ENST00000565833 850 ntBASIC3.98□□□□□ -1.77
TRIM39Q9HCM9 AC006504.6-201ENST00000590142 199 ntBASIC3.98□□□□□ -1.77
TRIM39Q9HCM9 AC011494.1-201ENST00000596454 237 ntBASIC3.98□□□□□ -1.77
TRIM39Q9HCM9 SNRPGP17-201ENST00000603780 214 ntBASIC3.98□□□□□ -1.77
TRIM39Q9HCM9 AC011890.2-201ENST00000613393 294 ntBASIC3.98□□□□□ -1.77
TRIM39Q9HCM9 MUCL1-205ENST00000619042 243 ntAPPRIS ALT2 TSL 5 BASIC3.98□□□□□ -1.77
TRIM39Q9HCM9 LINC02120-201ENST00000505518 2008 ntTSL 1 (best) BASIC3.98□□□□□ -1.77
TRIM39Q9HCM9 FAM35DP-201ENST00000323387 2712 ntBASIC3.98□□□□□ -1.77
TRIM39Q9HCM9 SPAG17-201ENST00000336338 6924 ntAPPRIS P2 TSL 1 (best) BASIC3.98□□□□□ -1.77
TRIM39Q9HCM9 DAZ4-202ENST00000382314 3910 ntAPPRIS ALT2 TSL 5 BASIC3.97□□□□□ -1.77
TRIM39Q9HCM9 STAU2-207ENST00000519961 3928 ntTSL 1 (best) BASIC3.97□□□□□ -1.77
TRIM39Q9HCM9 DOCK7-218ENST00000635123 6297 ntAPPRIS ALT2 TSL 5 BASIC3.97□□□□□ -1.77
TRIM39Q9HCM9 MTND5P7-201ENST00000413558 1798 ntBASIC3.97□□□□□ -1.77
TRIM39Q9HCM9 AC110597.3-202ENST00000583493 3289 ntTSL 5 BASIC3.97□□□□□ -1.77
TRIM39Q9HCM9 ADGRG2-205ENST00000357991 4661 ntAPPRIS P3 TSL 1 (best) BASIC3.97□□□□□ -1.77
TRIM39Q9HCM9 AC010733.2-201ENST00000589496 5702 ntBASIC3.97□□□□□ -1.77
TRIM39Q9HCM9 LIG4-201ENST00000356922 4096 ntAPPRIS P1 TSL 1 (best) BASIC3.97□□□□□ -1.77
TRIM39Q9HCM9 AC007656.2-201ENST00000624902 4547 ntBASIC3.97□□□□□ -1.77
TRIM39Q9HCM9 RNU6-884P-201ENST00000363889 107 ntBASIC3.97□□□□□ -1.77
TRIM39Q9HCM9 RNU6-890P-201ENST00000384121 107 ntBASIC3.97□□□□□ -1.77
TRIM39Q9HCM9 RNU4-6P-201ENST00000410804 122 ntBASIC3.97□□□□□ -1.77
TRIM39Q9HCM9 RNU6-325P-201ENST00000411132 105 ntBASIC3.97□□□□□ -1.77
TRIM39Q9HCM9 SYF2P2-201ENST00000417620 583 ntBASIC3.97□□□□□ -1.77
TRIM39Q9HCM9 AC092017.2-201ENST00000427600 362 ntBASIC3.97□□□□□ -1.77
TRIM39Q9HCM9 Z82205.1-201ENST00000428456 297 ntBASIC3.97□□□□□ -1.77
TRIM39Q9HCM9 RPL23AP50-201ENST00000434149 455 ntBASIC3.97□□□□□ -1.77
TRIM39Q9HCM9 LINC01549-201ENST00000440664 714 ntTSL 3 BASIC3.97□□□□□ -1.77
TRIM39Q9HCM9 AC124916.1-201ENST00000444020 547 ntBASIC3.97□□□□□ -1.77
TRIM39Q9HCM9 DARS-AS1-205ENST00000444649 558 ntTSL 3 BASIC3.97□□□□□ -1.77
TRIM39Q9HCM9 AL590664.1-201ENST00000448065 339 ntBASIC3.97□□□□□ -1.77
TRIM39Q9HCM9 RPL30P14-201ENST00000482744 348 ntBASIC3.97□□□□□ -1.77
TRIM39Q9HCM9 RPL32P34-201ENST00000486380 400 ntBASIC3.97□□□□□ -1.77
TRIM39Q9HCM9 AC096576.1-201ENST00000489014 359 ntBASIC3.97□□□□□ -1.77
TRIM39Q9HCM9 RNU6-377P-201ENST00000515965 102 ntBASIC3.97□□□□□ -1.77
TRIM39Q9HCM9 Y_RNA.687-201ENST00000516558 91 ntBASIC3.97□□□□□ -1.77
TRIM39Q9HCM9 IGKV2-38-201ENST00000517443 247 ntBASIC3.97□□□□□ -1.77
TRIM39Q9HCM9 AC010186.2-204ENST00000537668 439 ntBASIC3.97□□□□□ -1.77
TRIM39Q9HCM9 TRAV32-201ENST00000553993 340 ntBASIC3.97□□□□□ -1.77
TRIM39Q9HCM9 H3F3AP1-201ENST00000559984 334 ntBASIC3.97□□□□□ -1.77
TRIM39Q9HCM9 AC013565.1-201ENST00000565938 597 ntTSL 2 BASIC3.97□□□□□ -1.77
TRIM39Q9HCM9 VN1R85P-201ENST00000601587 426 ntBASIC3.97□□□□□ -1.77
TRIM39Q9HCM9 LINC01378-205ENST00000615833 158 ntTSL 5 BASIC3.97□□□□□ -1.77
TRIM39Q9HCM9 TMEM212-205ENST00000619900 585 ntAPPRIS P1 TSL 3 BASIC3.97□□□□□ -1.77
TRIM39Q9HCM9 U2.21-201ENST00000637295 81 ntBASIC3.97□□□□□ -1.77
TRIM39Q9HCM9 FTO-223ENST00000640179 210 ntTSL 5 BASIC3.97□□□□□ -1.77
TRIM39Q9HCM9 CEP170-202ENST00000366542 6828 ntAPPRIS P1 TSL 5 BASIC3.97□□□□□ -1.77
TRIM39Q9HCM9 USH2A-202ENST00000366942 6320 ntTSL 1 (best) BASIC3.97□□□□□ -1.77
TRIM39Q9HCM9 ETV1-202ENST00000399357 6096 ntTSL 2 BASIC3.96□□□□□ -1.78
TRIM39Q9HCM9 EFTUD1P2-201ENST00000514817 1603 ntBASIC3.96□□□□□ -1.78
Retrieved 100 of 98,524 protein–RNA pairs in 104.3 ms