Protein–RNA interactions for Protein: Q9H0E7

USP44, Ubiquitin carboxyl-terminal hydrolase 44, humanhuman

Predictions only

Length 712 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP44Q9H0E7 ANKRD18EP-201ENST00000405487 2632 ntBASIC3.27□□□□□ -1.89
USP44Q9H0E7 MME-216ENST00000615825 5523 ntAPPRIS P1 TSL 1 (best) BASIC3.27□□□□□ -1.89
USP44Q9H0E7 JMJD1C-210ENST00000542921 8149 ntAPPRIS ALT2 TSL 1 (best) BASIC3.27□□□□□ -1.89
USP44Q9H0E7 PIK3C2G-202ENST00000433979 4840 ntAPPRIS P1 TSL 5 BASIC3.26□□□□□ -1.89
USP44Q9H0E7 RNU1-105P-201ENST00000363470 161 ntBASIC3.26□□□□□ -1.89
USP44Q9H0E7 RNU6-288P-201ENST00000363690 104 ntBASIC3.26□□□□□ -1.89
USP44Q9H0E7 RNA5SP68-201ENST00000363885 119 ntBASIC3.26□□□□□ -1.89
USP44Q9H0E7 SNORA24.1-201ENST00000384401 135 ntBASIC3.26□□□□□ -1.89
USP44Q9H0E7 Y_RNA.516-201ENST00000384541 124 ntBASIC3.26□□□□□ -1.89
USP44Q9H0E7 TRAJ31-201ENST00000390506 57 ntAPPRIS P1 BASIC3.26□□□□□ -1.89
USP44Q9H0E7 RNA5SP252-201ENST00000391131 119 ntBASIC3.26□□□□□ -1.89
USP44Q9H0E7 AL354719.1-201ENST00000406535 843 ntBASIC3.26□□□□□ -1.89
USP44Q9H0E7 SNORD88.1-201ENST00000408684 91 ntBASIC3.26□□□□□ -1.89
USP44Q9H0E7 Y_RNA.599-201ENST00000410489 109 ntBASIC3.26□□□□□ -1.89
USP44Q9H0E7 AF274854.1-201ENST00000413236 615 ntBASIC3.26□□□□□ -1.89
USP44Q9H0E7 AP000473.1-201ENST00000413645 550 ntTSL 3 BASIC3.26□□□□□ -1.89
USP44Q9H0E7 NDUFB4P5-201ENST00000415445 361 ntBASIC3.26□□□□□ -1.89
USP44Q9H0E7 MTCYBP5-201ENST00000423752 1135 ntBASIC3.26□□□□□ -1.89
USP44Q9H0E7 RPL7P46-201ENST00000425129 740 ntBASIC3.26□□□□□ -1.89
USP44Q9H0E7 AC093106.2-201ENST00000428212 385 ntBASIC3.26□□□□□ -1.89
USP44Q9H0E7 AL353612.1-201ENST00000428769 465 ntTSL 3 BASIC3.26□□□□□ -1.89
USP44Q9H0E7 MTND3P21-201ENST00000433774 331 ntBASIC3.26□□□□□ -1.89
USP44Q9H0E7 MTATP6P16-201ENST00000434543 526 ntBASIC3.26□□□□□ -1.89
USP44Q9H0E7 AC069540.2-201ENST00000441776 351 ntTSL 3 BASIC3.26□□□□□ -1.89
USP44Q9H0E7 CECR9-201ENST00000453421 199 ntBASIC3.26□□□□□ -1.89
USP44Q9H0E7 AL031183.1-201ENST00000457667 207 ntBASIC3.26□□□□□ -1.89
USP44Q9H0E7 RPL7P5-201ENST00000471472 736 ntBASIC3.26□□□□□ -1.89
USP44Q9H0E7 RPL9P33-201ENST00000484311 566 ntBASIC3.26□□□□□ -1.89
USP44Q9H0E7 AC004052.1-202ENST00000505680 516 ntTSL 3 BASIC3.26□□□□□ -1.89
USP44Q9H0E7 AC109927.2-201ENST00000506416 303 ntBASIC3.26□□□□□ -1.89
USP44Q9H0E7 Y_RNA.689-201ENST00000516589 107 ntBASIC3.26□□□□□ -1.89
USP44Q9H0E7 AC068880.3-201ENST00000519185 179 ntTSL 5 BASIC3.26□□□□□ -1.89
USP44Q9H0E7 SUB1P1-201ENST00000524415 382 ntBASIC3.26□□□□□ -1.89
USP44Q9H0E7 FAM92A1P1-201ENST00000528023 890 ntBASIC3.26□□□□□ -1.89
USP44Q9H0E7 RANP3-201ENST00000530970 276 ntBASIC3.26□□□□□ -1.89
USP44Q9H0E7 OR5B19P-201ENST00000531766 928 ntBASIC3.26□□□□□ -1.89
USP44Q9H0E7 LINC02309-201ENST00000553679 207 ntTSL 3 BASIC3.26□□□□□ -1.89
USP44Q9H0E7 AL132819.1-201ENST00000555595 208 ntTSL 3 BASIC3.26□□□□□ -1.89
USP44Q9H0E7 CERS3-AS1-201ENST00000560643 372 ntTSL 3 BASIC3.26□□□□□ -1.89
USP44Q9H0E7 MIR1273C-201ENST00000578669 77 ntBASIC3.26□□□□□ -1.89
USP44Q9H0E7 AC005357.2-201ENST00000586473 583 ntTSL 2 BASIC3.26□□□□□ -1.89
USP44Q9H0E7 AC012409.4-201ENST00000612923 249 ntBASIC3.26□□□□□ -1.89
USP44Q9H0E7 AC025034.2-201ENST00000623264 286 ntBASIC3.26□□□□□ -1.89
USP44Q9H0E7 SOCS4-201ENST00000339298 6667 ntAPPRIS P1 TSL 1 (best) BASIC3.26□□□□□ -1.89
USP44Q9H0E7 FOXP2-211ENST00000408937 6443 ntTSL 1 (best) BASIC3.25□□□□□ -1.89
USP44Q9H0E7 TFEC-202ENST00000320239 6605 ntAPPRIS P1 TSL 1 (best) BASIC3.25□□□□□ -1.89
USP44Q9H0E7 ZCCHC10-201ENST00000324170 2178 ntAPPRIS P3 TSL 1 (best) BASIC3.25□□□□□ -1.89
USP44Q9H0E7 DMD-203ENST00000357033 13956 ntAPPRIS P3 TSL 1 (best) BASIC3.25□□□□□ -1.89
USP44Q9H0E7 SNHG14-215ENST00000551631 4008 ntTSL 5 BASIC3.25□□□□□ -1.89
USP44Q9H0E7 SHOC2-201ENST00000265277 3691 ntTSL 2 BASIC3.25□□□□□ -1.89
USP44Q9H0E7 LRRC69-201ENST00000343709 720 ntTSL 2 BASIC3.25□□□□□ -1.89
USP44Q9H0E7 U3.12-201ENST00000364498 214 ntBASIC3.25□□□□□ -1.89
USP44Q9H0E7 RNU6-61P-201ENST00000365528 109 ntBASIC3.25□□□□□ -1.89
USP44Q9H0E7 Y_RNA.367-201ENST00000365544 101 ntBASIC3.25□□□□□ -1.89
USP44Q9H0E7 UBE2V1P2-201ENST00000397758 440 ntBASIC3.25□□□□□ -1.89
USP44Q9H0E7 AL139039.1-201ENST00000401900 692 ntBASIC3.25□□□□□ -1.89
USP44Q9H0E7 RPS4XP8-201ENST00000402039 771 ntBASIC3.25□□□□□ -1.89
USP44Q9H0E7 BMS1P22-201ENST00000414726 313 ntBASIC3.25□□□□□ -1.89
USP44Q9H0E7 AC073626.1-201ENST00000415146 582 ntTSL 4 BASIC3.25□□□□□ -1.89
USP44Q9H0E7 OR51A5P-201ENST00000415429 942 ntBASIC3.25□□□□□ -1.89
USP44Q9H0E7 AL031779.1-201ENST00000415663 330 ntBASIC3.25□□□□□ -1.89
USP44Q9H0E7 AL590705.3-201ENST00000416066 474 ntTSL 1 (best) BASIC3.25□□□□□ -1.89
USP44Q9H0E7 MTATP6P18-201ENST00000417994 673 ntBASIC3.25□□□□□ -1.89
USP44Q9H0E7 SDCBPP3-201ENST00000419629 891 ntBASIC3.25□□□□□ -1.89
USP44Q9H0E7 OR2B8P-201ENST00000432841 938 ntBASIC3.25□□□□□ -1.89
USP44Q9H0E7 RPL36AP53-201ENST00000432891 316 ntBASIC3.25□□□□□ -1.89
USP44Q9H0E7 AF274573.2-201ENST00000437772 520 ntTSL 5 BASIC3.25□□□□□ -1.89
USP44Q9H0E7 AC099566.1-201ENST00000442558 479 ntTSL 3 BASIC3.25□□□□□ -1.89
USP44Q9H0E7 BRK1P2-201ENST00000442875 223 ntBASIC3.25□□□□□ -1.89
USP44Q9H0E7 MTND1P1-201ENST00000445453 368 ntBASIC3.25□□□□□ -1.89
USP44Q9H0E7 NRG3-AS1-201ENST00000448936 555 ntTSL 2 BASIC3.25□□□□□ -1.89
USP44Q9H0E7 FABP5P13-201ENST00000452144 328 ntBASIC3.25□□□□□ -1.89
USP44Q9H0E7 AL356010.1-201ENST00000456364 102 ntBASIC3.25□□□□□ -1.89
USP44Q9H0E7 AC105417.1-201ENST00000514691 285 ntBASIC3.25□□□□□ -1.89
USP44Q9H0E7 RNU6-914P-201ENST00000516749 109 ntBASIC3.25□□□□□ -1.89
USP44Q9H0E7 AC022360.2-202ENST00000517308 407 ntTSL 3 BASIC3.25□□□□□ -1.89
USP44Q9H0E7 AC016957.1-201ENST00000534895 309 ntBASIC3.25□□□□□ -1.89
USP44Q9H0E7 CLEC2D-214ENST00000543300 399 ntTSL 1 (best) BASIC3.25□□□□□ -1.89
USP44Q9H0E7 CLEC2D-216ENST00000545918 288 ntTSL 1 (best) BASIC3.25□□□□□ -1.89
USP44Q9H0E7 AC133480.1-201ENST00000547563 381 ntTSL 3 BASIC3.25□□□□□ -1.89
USP44Q9H0E7 AC079907.1-201ENST00000552707 374 ntTSL 3 BASIC3.25□□□□□ -1.89
USP44Q9H0E7 SUB1P2-201ENST00000556401 297 ntBASIC3.25□□□□□ -1.89
USP44Q9H0E7 AL049869.2-201ENST00000556634 365 ntTSL 2 BASIC3.25□□□□□ -1.89
USP44Q9H0E7 AC015813.2-201ENST00000578794 711 ntAPPRIS P1 TSL 3 BASIC3.25□□□□□ -1.89
USP44Q9H0E7 AC024619.4-201ENST00000580924 316 ntBASIC3.25□□□□□ -1.89
USP44Q9H0E7 DEFB131E-202ENST00000602581 683 ntBASIC3.25□□□□□ -1.89
USP44Q9H0E7 AL133393.1-201ENST00000603277 287 ntBASIC3.25□□□□□ -1.89
USP44Q9H0E7 AC114316.2-202ENST00000502934 2957 ntTSL 2 BASIC3.25□□□□□ -1.89
USP44Q9H0E7 ATP2B1-201ENST00000261173 6777 ntAPPRIS P1 TSL 1 (best) BASIC3.25□□□□□ -1.89
USP44Q9H0E7 AC007336.1-201ENST00000576365 3828 ntBASIC3.25□□□□□ -1.89
USP44Q9H0E7 CATSPERB-201ENST00000256343 3623 ntAPPRIS P2 TSL 1 (best) BASIC3.25□□□□□ -1.89
USP44Q9H0E7 AC103993.1-201ENST00000521500 1584 ntTSL 5 BASIC3.25□□□□□ -1.89
USP44Q9H0E7 PIK3C2G-201ENST00000266497 4764 ntAPPRIS P1 TSL 1 (best) BASIC3.24□□□□□ -1.89
USP44Q9H0E7 GTPBP8-205ENST00000473129 1518 ntTSL 2 BASIC3.24□□□□□ -1.89
USP44Q9H0E7 RNU6-1027P-201ENST00000383998 107 ntBASIC3.24□□□□□ -1.89
USP44Q9H0E7 Y_RNA.481-201ENST00000384373 102 ntBASIC3.24□□□□□ -1.89
USP44Q9H0E7 MIR196B-201ENST00000384852 84 ntBASIC3.24□□□□□ -1.89
USP44Q9H0E7 LINC00301-202ENST00000412599 772 ntTSL 1 (best) BASIC3.24□□□□□ -1.89
USP44Q9H0E7 DPPA2P1-201ENST00000428060 556 ntBASIC3.24□□□□□ -1.89
USP44Q9H0E7 AC236972.1-201ENST00000433225 199 ntBASIC3.24□□□□□ -1.89
Retrieved 100 of 98,524 protein–RNA pairs in 108.4 ms