Protein–RNA interactions for Protein: Q9BUN5

CCDC28B, Coiled-coil domain-containing protein 28B, humanhuman

Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28BQ9BUN5 AC107294.1-201ENST00000609524 467 ntBASIC2.55□□□□□ -2
CCDC28BQ9BUN5 uc_338.11-201ENST00000619132 160 ntBASIC2.55□□□□□ -2
CCDC28BQ9BUN5 MTND5P42-201ENST00000637720 498 ntBASIC2.55□□□□□ -2
CCDC28BQ9BUN5 AC068137.3-201ENST00000639191 341 ntBASIC2.55□□□□□ -2
CCDC28BQ9BUN5 AC073869.6-201ENST00000640656 341 ntBASIC2.55□□□□□ -2
CCDC28BQ9BUN5 AL049641.1-201ENST00000441055 1948 ntBASIC2.54□□□□□ -2
CCDC28BQ9BUN5 AC093536.2-201ENST00000565257 1406 ntBASIC2.54□□□□□ -2
CCDC28BQ9BUN5 MIR422A-201ENST00000362286 90 ntBASIC2.54□□□□□ -2
CCDC28BQ9BUN5 RNU6-179P-201ENST00000363350 107 ntBASIC2.54□□□□□ -2
CCDC28BQ9BUN5 SNORA38.1-201ENST00000364172 131 ntBASIC2.54□□□□□ -2
CCDC28BQ9BUN5 AKAP14-203ENST00000371425 793 ntAPPRIS ALT2 TSL 5 BASIC2.54□□□□□ -2
CCDC28BQ9BUN5 RPL17P50-201ENST00000396131 546 ntBASIC2.54□□□□□ -2
CCDC28BQ9BUN5 RNA5SP21-201ENST00000410917 96 ntBASIC2.54□□□□□ -2
CCDC28BQ9BUN5 FCF1P9-201ENST00000412546 282 ntBASIC2.54□□□□□ -2
CCDC28BQ9BUN5 OR51A5P-201ENST00000415429 942 ntBASIC2.54□□□□□ -2
CCDC28BQ9BUN5 AL109913.1-201ENST00000421173 514 ntBASIC2.54□□□□□ -2
CCDC28BQ9BUN5 AC092047.1-201ENST00000424997 240 ntBASIC2.54□□□□□ -2
CCDC28BQ9BUN5 C8orf59P1-201ENST00000429930 303 ntBASIC2.54□□□□□ -2
CCDC28BQ9BUN5 AP000431.2-201ENST00000450653 790 ntTSL 2 BASIC2.54□□□□□ -2
CCDC28BQ9BUN5 RNU7-182P-201ENST00000459009 62 ntBASIC2.54□□□□□ -2
CCDC28BQ9BUN5 MRPS17P3-201ENST00000465453 385 ntBASIC2.54□□□□□ -2
CCDC28BQ9BUN5 UMAD1-204ENST00000482067 569 ntTSL 5 BASIC2.54□□□□□ -2
CCDC28BQ9BUN5 AC019235.1-201ENST00000503847 207 ntBASIC2.54□□□□□ -2
CCDC28BQ9BUN5 AC008716.1-201ENST00000511084 513 ntBASIC2.54□□□□□ -2
CCDC28BQ9BUN5 RNA5SP82-201ENST00000516707 92 ntBASIC2.54□□□□□ -2
CCDC28BQ9BUN5 AP001318.2-201ENST00000533378 492 ntTSL 3 BASIC2.54□□□□□ -2
CCDC28BQ9BUN5 AC023796.2-201ENST00000545410 451 ntTSL 3 BASIC2.54□□□□□ -2
CCDC28BQ9BUN5 PCED1B-AS1-208ENST00000551898 359 ntTSL 3 BASIC2.54□□□□□ -2
CCDC28BQ9BUN5 HMGB1P14-201ENST00000557424 591 ntBASIC2.54□□□□□ -2
CCDC28BQ9BUN5 AC025917.1-202ENST00000566344 635 ntTSL 5 BASIC2.54□□□□□ -2
CCDC28BQ9BUN5 AC024619.4-201ENST00000580924 316 ntBASIC2.54□□□□□ -2
CCDC28BQ9BUN5 MIR3158-1-201ENST00000583596 81 ntBASIC2.54□□□□□ -2
CCDC28BQ9BUN5 AP005057.1-201ENST00000583827 574 ntTSL 4 BASIC2.54□□□□□ -2
CCDC28BQ9BUN5 AC027309.3-201ENST00000623419 351 ntBASIC2.54□□□□□ -2
CCDC28BQ9BUN5 AC093648.1-201ENST00000623546 606 ntBASIC2.54□□□□□ -2
CCDC28BQ9BUN5 WARS-244ENST00000627608 123 ntTSL 5 BASIC2.54□□□□□ -2
CCDC28BQ9BUN5 LINC01090-203ENST00000632331 466 ntTSL 5 BASIC2.54□□□□□ -2
CCDC28BQ9BUN5 TMPRSS11A-201ENST00000334830 3054 ntAPPRIS P3 TSL 2 BASIC2.54□□□□□ -2
CCDC28BQ9BUN5 PIK3C2G-202ENST00000433979 4840 ntAPPRIS P1 TSL 5 BASIC2.54□□□□□ -2
CCDC28BQ9BUN5 SEL1L2-201ENST00000284951 2224 ntAPPRIS P1 TSL 5 BASIC2.53□□□□□ -2
CCDC28BQ9BUN5 ZNF680P1-201ENST00000436625 1469 ntBASIC2.53□□□□□ -2
CCDC28BQ9BUN5 RNA5SP374-201ENST00000362939 125 ntBASIC2.53□□□□□ -2
CCDC28BQ9BUN5 RNU6-1167P-201ENST00000363227 94 ntBASIC2.53□□□□□ -2
CCDC28BQ9BUN5 RNU6-1085P-201ENST00000363576 107 ntBASIC2.53□□□□□ -2
CCDC28BQ9BUN5 RNU6-1322P-201ENST00000364309 107 ntBASIC2.53□□□□□ -2
CCDC28BQ9BUN5 RNA5SP72-201ENST00000364442 117 ntBASIC2.53□□□□□ -2
CCDC28BQ9BUN5 RNU6-61P-201ENST00000365528 109 ntBASIC2.53□□□□□ -2
CCDC28BQ9BUN5 SNORA24.1-201ENST00000384401 135 ntBASIC2.53□□□□□ -2
CCDC28BQ9BUN5 RNVU1-14-201ENST00000384770 164 ntBASIC2.53□□□□□ -2
CCDC28BQ9BUN5 AL139397.2-201ENST00000404529 772 ntBASIC2.53□□□□□ -2
CCDC28BQ9BUN5 AL138885.1-201ENST00000405921 675 ntBASIC2.53□□□□□ -2
CCDC28BQ9BUN5 LINC00301-202ENST00000412599 772 ntTSL 1 (best) BASIC2.53□□□□□ -2
CCDC28BQ9BUN5 AC114491.1-201ENST00000416095 246 ntBASIC2.53□□□□□ -2
CCDC28BQ9BUN5 AL136369.2-201ENST00000420825 537 ntTSL 3 BASIC2.53□□□□□ -2
CCDC28BQ9BUN5 LINC02541-201ENST00000427157 327 ntTSL 3 BASIC2.53□□□□□ -2
CCDC28BQ9BUN5 AC093106.2-201ENST00000428212 385 ntBASIC2.53□□□□□ -2
CCDC28BQ9BUN5 CALM2P2-201ENST00000428512 440 ntBASIC2.53□□□□□ -2
CCDC28BQ9BUN5 LINC02041-201ENST00000440726 246 ntTSL 5 BASIC2.53□□□□□ -2
CCDC28BQ9BUN5 BNIP3P2-201ENST00000441221 577 ntBASIC2.53□□□□□ -2
CCDC28BQ9BUN5 AC069549.1-201ENST00000451584 499 ntTSL 3 BASIC2.53□□□□□ -2
CCDC28BQ9BUN5 AL136164.1-201ENST00000456795 352 ntTSL 3 BASIC2.53□□□□□ -2
CCDC28BQ9BUN5 RNU6-420P-201ENST00000458780 107 ntBASIC2.53□□□□□ -2
CCDC28BQ9BUN5 RPS29P26-201ENST00000477483 171 ntBASIC2.53□□□□□ -2
CCDC28BQ9BUN5 RPL39P36-201ENST00000490784 156 ntBASIC2.53□□□□□ -2
CCDC28BQ9BUN5 LINC01997-201ENST00000494900 429 ntTSL 2 BASIC2.53□□□□□ -2
CCDC28BQ9BUN5 AC105417.1-201ENST00000514691 285 ntBASIC2.53□□□□□ -2
CCDC28BQ9BUN5 RNA5SP282-201ENST00000516355 108 ntBASIC2.53□□□□□ -2
CCDC28BQ9BUN5 RNU6-314P-201ENST00000516574 104 ntBASIC2.53□□□□□ -2
CCDC28BQ9BUN5 RNU1-104P-201ENST00000517280 175 ntBASIC2.53□□□□□ -2
CCDC28BQ9BUN5 CASP1P1-201ENST00000526345 212 ntBASIC2.53□□□□□ -2
CCDC28BQ9BUN5 OR5B19P-201ENST00000531766 928 ntBASIC2.53□□□□□ -2
CCDC28BQ9BUN5 A2ML1-AS1-201ENST00000537288 452 ntTSL 3 BASIC2.53□□□□□ -2
CCDC28BQ9BUN5 LINC02350-201ENST00000544419 480 ntTSL 3 BASIC2.53□□□□□ -2
CCDC28BQ9BUN5 AC002115.1-201ENST00000589603 568 ntTSL 4 BASIC2.53□□□□□ -2
CCDC28BQ9BUN5 ZNF788-206ENST00000596883 692 ntTSL 3 BASIC2.53□□□□□ -2
CCDC28BQ9BUN5 AC008739.2-201ENST00000597006 317 ntBASIC2.53□□□□□ -2
CCDC28BQ9BUN5 AL020997.2-201ENST00000602607 184 ntBASIC2.53□□□□□ -2
CCDC28BQ9BUN5 UBE2Q2P6-201ENST00000612666 153 ntBASIC2.53□□□□□ -2
CCDC28BQ9BUN5 AL359547.2-201ENST00000615810 418 ntBASIC2.53□□□□□ -2
CCDC28BQ9BUN5 VPS8-228ENST00000628962 207 ntTSL 5 BASIC2.53□□□□□ -2
CCDC28BQ9BUN5 SEPT14P19-203ENST00000633205 211 ntBASIC2.53□□□□□ -2
CCDC28BQ9BUN5 ANKRD36BP1-201ENST00000358576 1779 ntBASIC2.53□□□□□ -2
CCDC28BQ9BUN5 AC103710.2-202ENST00000641454 2853 ntBASIC2.53□□□□□ -2
CCDC28BQ9BUN5 AC027514.1-201ENST00000588561 1603 ntBASIC2.53□□□□□ -2
CCDC28BQ9BUN5 STX7-202ENST00000367941 15791 ntAPPRIS P1 TSL 1 (best) BASIC2.52□□□□□ -2.01
CCDC28BQ9BUN5 UBE2L2-201ENST00000254302 429 ntBASIC2.52□□□□□ -2.01
CCDC28BQ9BUN5 LINC00305-201ENST00000323355 873 ntTSL 1 (best) BASIC2.52□□□□□ -2.01
CCDC28BQ9BUN5 OR4G2P-201ENST00000328113 903 ntBASIC2.52□□□□□ -2.01
CCDC28BQ9BUN5 Y_RNA.126-201ENST00000363382 111 ntBASIC2.52□□□□□ -2.01
CCDC28BQ9BUN5 DEFB119-202ENST00000376315 324 ntAPPRIS ALT2 TSL 1 (best) BASIC2.52□□□□□ -2.01
CCDC28BQ9BUN5 RNU6-190P-201ENST00000384154 102 ntBASIC2.52□□□□□ -2.01
CCDC28BQ9BUN5 RNU6-517P-201ENST00000384362 110 ntBASIC2.52□□□□□ -2.01
CCDC28BQ9BUN5 CALM2P3-201ENST00000400429 449 ntBASIC2.52□□□□□ -2.01
CCDC28BQ9BUN5 RPS12P24-201ENST00000412619 387 ntBASIC2.52□□□□□ -2.01
CCDC28BQ9BUN5 UBE2V1P10-201ENST00000414685 269 ntBASIC2.52□□□□□ -2.01
CCDC28BQ9BUN5 AC133106.1-201ENST00000419029 397 ntTSL 3 BASIC2.52□□□□□ -2.01
CCDC28BQ9BUN5 USP9YP20-201ENST00000419224 558 ntBASIC2.52□□□□□ -2.01
CCDC28BQ9BUN5 AC073311.1-201ENST00000420146 505 ntTSL 5 BASIC2.52□□□□□ -2.01
CCDC28BQ9BUN5 AL445123.1-201ENST00000422023 446 ntTSL 2 BASIC2.52□□□□□ -2.01
CCDC28BQ9BUN5 AL355674.1-201ENST00000423681 648 ntTSL 1 (best) BASIC2.52□□□□□ -2.01
Retrieved 100 of 98,524 protein–RNA pairs in 85.5 ms