Protein–RNA interactions for Protein: Q99742

NPAS1, Neuronal PAS domain-containing protein 1, humanhuman

Predictions only

Length 590 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPAS1Q99742 AL079305.1-201ENST00000623159 3008 ntBASIC3.2□□□□□ -1.9
NPAS1Q99742 MCF2-202ENST00000370573 2583 ntAPPRIS ALT2 TSL 1 (best) BASIC3.2□□□□□ -1.9
NPAS1Q99742 AL136164.4-201ENST00000625013 2135 ntBASIC3.2□□□□□ -1.9
NPAS1Q99742 FASTKD1-205ENST00000453929 2791 ntTSL 2 BASIC3.2□□□□□ -1.9
NPAS1Q99742 KIAA1109-203ENST00000388738 15574 ntAPPRIS P1 TSL 1 (best) BASIC3.2□□□□□ -1.9
NPAS1Q99742 FNDC3A-202ENST00000398316 5714 ntTSL 1 (best) BASIC3.2□□□□□ -1.9
NPAS1Q99742 ZFYVE16-202ENST00000505560 6599 ntAPPRIS P1 TSL 1 (best) BASIC3.2□□□□□ -1.9
NPAS1Q99742 UEVLD-208ENST00000535484 1963 ntTSL 2 BASIC3.2□□□□□ -1.9
NPAS1Q99742 SYCP2-201ENST00000357552 5567 ntAPPRIS P2 TSL 1 (best) BASIC3.19□□□□□ -1.9
NPAS1Q99742 CKAP5-201ENST00000312055 6532 ntTSL 5 BASIC3.19□□□□□ -1.9
NPAS1Q99742 KLRA1P-202ENST00000510134 1410 ntTSL 5 BASIC3.19□□□□□ -1.9
NPAS1Q99742 DICER1-203ENST00000526495 10331 ntAPPRIS P1 TSL 5 BASIC3.19□□□□□ -1.9
NPAS1Q99742 GABRG2-215ENST00000639213 9960 ntTSL 1 (best) BASIC3.19□□□□□ -1.9
NPAS1Q99742 UTS2-202ENST00000361696 559 ntAPPRIS ALT2 TSL 1 (best) BASIC3.19□□□□□ -1.9
NPAS1Q99742 SNORD113-7-201ENST00000363762 77 ntBASIC3.19□□□□□ -1.9
NPAS1Q99742 RNU6-266P-201ENST00000364225 107 ntBASIC3.19□□□□□ -1.9
NPAS1Q99742 Y_RNA.324-201ENST00000365165 102 ntBASIC3.19□□□□□ -1.9
NPAS1Q99742 LINC00862-202ENST00000367356 759 ntTSL 3 BASIC3.19□□□□□ -1.9
NPAS1Q99742 RNU6-198P-201ENST00000384258 104 ntBASIC3.19□□□□□ -1.9
NPAS1Q99742 RNU6-1009P-201ENST00000390996 107 ntBASIC3.19□□□□□ -1.9
NPAS1Q99742 MIR450B-201ENST00000401182 78 ntBASIC3.19□□□□□ -1.9
NPAS1Q99742 U3.39-201ENST00000408569 239 ntBASIC3.19□□□□□ -1.9
NPAS1Q99742 RPL26P27-201ENST00000414397 437 ntBASIC3.19□□□□□ -1.9
NPAS1Q99742 AL353621.1-201ENST00000418219 243 ntBASIC3.19□□□□□ -1.9
NPAS1Q99742 USP9YP20-201ENST00000419224 558 ntBASIC3.19□□□□□ -1.9
NPAS1Q99742 CYCSP4-201ENST00000429682 331 ntBASIC3.19□□□□□ -1.9
NPAS1Q99742 AL627311.1-201ENST00000431514 115 ntBASIC3.19□□□□□ -1.9
NPAS1Q99742 IFNA20P-201ENST00000436840 528 ntBASIC3.19□□□□□ -1.9
NPAS1Q99742 USP9YP8-201ENST00000441913 500 ntBASIC3.19□□□□□ -1.9
NPAS1Q99742 AC093019.1-201ENST00000443135 252 ntBASIC3.19□□□□□ -1.9
NPAS1Q99742 SPIN4-AS1-201ENST00000451979 426 ntTSL 2 BASIC3.19□□□□□ -1.9
NPAS1Q99742 AC010099.1-201ENST00000455434 375 ntBASIC3.19□□□□□ -1.9
NPAS1Q99742 snoU109.2-201ENST00000459316 135 ntBASIC3.19□□□□□ -1.9
NPAS1Q99742 AC010401.1-201ENST00000463867 348 ntBASIC3.19□□□□□ -1.9
NPAS1Q99742 HMGN2P13-201ENST00000476476 274 ntBASIC3.19□□□□□ -1.9
NPAS1Q99742 RPS29P20-201ENST00000489592 171 ntBASIC3.19□□□□□ -1.9
NPAS1Q99742 HMGN1P12-201ENST00000499125 195 ntBASIC3.19□□□□□ -1.9
NPAS1Q99742 FAM206BP-201ENST00000510179 541 ntBASIC3.19□□□□□ -1.9
NPAS1Q99742 BMPR1B-AS1-201ENST00000510795 511 ntTSL 3 BASIC3.19□□□□□ -1.9
NPAS1Q99742 RNU6-507P-201ENST00000516045 100 ntBASIC3.19□□□□□ -1.9
NPAS1Q99742 SNORA14.1-201ENST00000516113 141 ntBASIC3.19□□□□□ -1.9
NPAS1Q99742 CYCSP27-201ENST00000527643 293 ntBASIC3.19□□□□□ -1.9
NPAS1Q99742 AC087241.2-201ENST00000535801 324 ntBASIC3.19□□□□□ -1.9
NPAS1Q99742 NACAP3-201ENST00000552100 481 ntBASIC3.19□□□□□ -1.9
NPAS1Q99742 AC090115.3-201ENST00000553218 849 ntBASIC3.19□□□□□ -1.9
NPAS1Q99742 AL352979.2-201ENST00000556988 366 ntTSL 3 BASIC3.19□□□□□ -1.9
NPAS1Q99742 AC091043.1-201ENST00000579830 453 ntTSL 3 BASIC3.19□□□□□ -1.9
NPAS1Q99742 AC005498.1-201ENST00000592125 465 ntBASIC3.19□□□□□ -1.9
NPAS1Q99742 AL645944.1-201ENST00000603857 493 ntBASIC3.19□□□□□ -1.9
NPAS1Q99742 DAOA-AS1_2.1-201ENST00000614829 187 ntBASIC3.19□□□□□ -1.9
NPAS1Q99742 AL138880.2-201ENST00000616214 239 ntBASIC3.19□□□□□ -1.9
NPAS1Q99742 AC104260.1-201ENST00000616660 539 ntBASIC3.19□□□□□ -1.9
NPAS1Q99742 HOTAIRM1_5.1-201ENST00000619311 145 ntBASIC3.19□□□□□ -1.9
NPAS1Q99742 TEX41-280ENST00000629185 591 ntTSL 5 BASIC3.19□□□□□ -1.9
NPAS1Q99742 TOPORSLP1-203ENST00000493279 2871 ntTSL 4 BASIC3.19□□□□□ -1.9
NPAS1Q99742 AGL-205ENST00000370163 7166 ntAPPRIS P1 TSL 1 (best) BASIC3.19□□□□□ -1.9
NPAS1Q99742 AC093908.1-201ENST00000623125 8092 ntBASIC3.19□□□□□ -1.9
NPAS1Q99742 LIPI-203ENST00000536861 1529 ntAPPRIS ALT2 TSL 1 (best) BASIC3.19□□□□□ -1.9
NPAS1Q99742 C5orf51-201ENST00000381647 5241 ntAPPRIS P1 TSL 1 (best) BASIC3.18□□□□□ -1.9
NPAS1Q99742 ADGRL2-207ENST00000370723 5254 ntTSL 5 BASIC3.18□□□□□ -1.9
NPAS1Q99742 NEB-201ENST00000172853 20634 ntAPPRIS ALT2 TSL 1 (best) BASIC3.18□□□□□ -1.9
NPAS1Q99742 MTND5P7-201ENST00000413558 1798 ntBASIC3.18□□□□□ -1.9
NPAS1Q99742 DOCK7-202ENST00000340370 6731 ntAPPRIS P3 TSL 2 BASIC3.18□□□□□ -1.9
NPAS1Q99742 ZNF99-202ENST00000596209 7817 ntTSL 5 BASIC3.18□□□□□ -1.9
NPAS1Q99742 RNU6-845P-201ENST00000362578 103 ntBASIC3.18□□□□□ -1.9
NPAS1Q99742 Y_RNA.279-201ENST00000364763 95 ntBASIC3.18□□□□□ -1.9
NPAS1Q99742 RNU6-805P-201ENST00000365643 106 ntBASIC3.18□□□□□ -1.9
NPAS1Q99742 Y_RNA.414-201ENST00000384011 101 ntBASIC3.18□□□□□ -1.9
NPAS1Q99742 SNORA75B-201ENST00000384053 137 ntBASIC3.18□□□□□ -1.9
NPAS1Q99742 MIR670-201ENST00000390142 98 ntBASIC3.18□□□□□ -1.9
NPAS1Q99742 RNA5SP171-201ENST00000391071 115 ntBASIC3.18□□□□□ -1.9
NPAS1Q99742 RNA5SP252-201ENST00000391131 119 ntBASIC3.18□□□□□ -1.9
NPAS1Q99742 SNORA40C-201ENST00000391285 128 ntBASIC3.18□□□□□ -1.9
NPAS1Q99742 RNU6-1077P-201ENST00000410506 102 ntBASIC3.18□□□□□ -1.9
NPAS1Q99742 RPS29P4-201ENST00000414733 161 ntBASIC3.18□□□□□ -1.9
NPAS1Q99742 NDUFA5P4-201ENST00000436704 385 ntBASIC3.18□□□□□ -1.9
NPAS1Q99742 AP000936.1-201ENST00000442124 483 ntTSL 5 BASIC3.18□□□□□ -1.9
NPAS1Q99742 RPL21P23-201ENST00000446654 460 ntBASIC3.18□□□□□ -1.9
NPAS1Q99742 NRG3-AS1-201ENST00000448936 555 ntTSL 2 BASIC3.18□□□□□ -1.9
NPAS1Q99742 BTF3P15-201ENST00000455606 336 ntBASIC3.18□□□□□ -1.9
NPAS1Q99742 AP000852.1-201ENST00000472460 573 ntBASIC3.18□□□□□ -1.9
NPAS1Q99742 SNORA31.1-201ENST00000515993 133 ntBASIC3.18□□□□□ -1.9
NPAS1Q99742 SNORA31.5-201ENST00000516190 133 ntBASIC3.18□□□□□ -1.9
NPAS1Q99742 RNU6-579P-201ENST00000516879 102 ntBASIC3.18□□□□□ -1.9
NPAS1Q99742 RNA5SP380-201ENST00000517190 98 ntBASIC3.18□□□□□ -1.9
NPAS1Q99742 AC090136.1-201ENST00000520009 240 ntBASIC3.18□□□□□ -1.9
NPAS1Q99742 AC092747.1-202ENST00000540595 380 ntTSL 5 BASIC3.18□□□□□ -1.9
NPAS1Q99742 AC026333.2-201ENST00000542164 106 ntBASIC3.18□□□□□ -1.9
NPAS1Q99742 LINC00933-203ENST00000559812 219 ntBASIC3.18□□□□□ -1.9
NPAS1Q99742 MIR4474-201ENST00000579189 78 ntBASIC3.18□□□□□ -1.9
NPAS1Q99742 AC009271.1-202ENST00000588803 492 ntTSL 3 BASIC3.18□□□□□ -1.9
NPAS1Q99742 BNIP3P25-201ENST00000596023 559 ntBASIC3.18□□□□□ -1.9
NPAS1Q99742 AC243960.4-201ENST00000600532 288 ntBASIC3.18□□□□□ -1.9
NPAS1Q99742 HOTTIP_4.1-201ENST00000618195 165 ntBASIC3.18□□□□□ -1.9
NPAS1Q99742 SYNE1-201ENST00000341594 26584 ntAPPRIS ALT2 TSL 5 BASIC3.18□□□□□ -1.9
NPAS1Q99742 SYTL2-203ENST00000359152 4123 ntAPPRIS ALT1 TSL 1 (best) BASIC3.18□□□□□ -1.9
NPAS1Q99742 GPRC6A-202ENST00000368549 2622 ntTSL 1 (best) BASIC3.18□□□□□ -1.9
NPAS1Q99742 MANEA-201ENST00000358812 4575 ntAPPRIS P1 TSL 1 (best) BASIC3.17□□□□□ -1.9
NPAS1Q99742 AC068647.1-201ENST00000489539 2265 ntBASIC3.17□□□□□ -1.9
NPAS1Q99742 LINC00890-202ENST00000569275 4595 ntAPPRIS P1 TSL 1 (best) BASIC3.17□□□□□ -1.9
Retrieved 100 of 98,524 protein–RNA pairs in 129 ms