Protein–RNA interactions for Protein: Q99567

NUP88, Nuclear pore complex protein Nup88, humanhuman

Predicted RBP Predictions only

Length 741 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88Q99567 HELZ-201ENST00000358691 13810 ntTSL 1 (best) BASIC3.84□□□□□ -1.79
NUP88Q99567 SNORA72.1-201ENST00000363485 129 ntBASIC3.84□□□□□ -1.79
NUP88Q99567 RNY3P14-201ENST00000384309 102 ntBASIC3.84□□□□□ -1.79
NUP88Q99567 POLHP1-201ENST00000411806 470 ntBASIC3.84□□□□□ -1.79
NUP88Q99567 AC138393.2-201ENST00000414742 246 ntBASIC3.84□□□□□ -1.79
NUP88Q99567 RPL21P111-201ENST00000418453 477 ntBASIC3.84□□□□□ -1.79
NUP88Q99567 AC106873.1-201ENST00000420664 459 ntTSL 3 BASIC3.84□□□□□ -1.79
NUP88Q99567 RPL23AP82-202ENST00000427528 469 ntBASIC3.84□□□□□ -1.79
NUP88Q99567 AL669831.1-202ENST00000428504 417 ntBASIC3.84□□□□□ -1.79
NUP88Q99567 BX679664.1-201ENST00000434429 253 ntBASIC3.84□□□□□ -1.79
NUP88Q99567 GTF2IP13-201ENST00000438487 386 ntBASIC3.84□□□□□ -1.79
NUP88Q99567 AC083904.1-201ENST00000487828 231 ntBASIC3.84□□□□□ -1.79
NUP88Q99567 HMGB1P30-201ENST00000492455 606 ntBASIC3.84□□□□□ -1.79
NUP88Q99567 HIGD1AP13-201ENST00000509878 289 ntBASIC3.84□□□□□ -1.79
NUP88Q99567 RNU2-69P-201ENST00000516061 100 ntBASIC3.84□□□□□ -1.79
NUP88Q99567 RPL7P20-201ENST00000520308 745 ntBASIC3.84□□□□□ -1.79
NUP88Q99567 AC023050.3-201ENST00000541142 333 ntBASIC3.84□□□□□ -1.79
NUP88Q99567 HMGB1P14-201ENST00000557424 591 ntBASIC3.84□□□□□ -1.79
NUP88Q99567 AC018638.8-201ENST00000588755 281 ntBASIC3.84□□□□□ -1.79
NUP88Q99567 AC103710.3-201ENST00000608157 948 ntBASIC3.84□□□□□ -1.79
NUP88Q99567 OR4C16-201ENST00000623907 933 ntAPPRIS P1 BASIC3.84□□□□□ -1.79
NUP88Q99567 AC022418.1-201ENST00000624118 445 ntBASIC3.84□□□□□ -1.79
NUP88Q99567 AL008636.1-201ENST00000625038 1018 ntBASIC3.84□□□□□ -1.79
NUP88Q99567 ABCA5-208ENST00000588877 6525 ntAPPRIS P1 TSL 1 (best) BASIC3.84□□□□□ -1.8
NUP88Q99567 AC118273.1-201ENST00000525324 3006 ntBASIC3.84□□□□□ -1.8
NUP88Q99567 AL136164.4-201ENST00000625013 2135 ntBASIC3.83□□□□□ -1.8
NUP88Q99567 CHD9-213ENST00000564845 11504 ntAPPRIS P1 TSL 1 (best) BASIC3.83□□□□□ -1.8
NUP88Q99567 MBNL1-206ENST00000357472 5256 ntTSL 5 BASIC3.83□□□□□ -1.8
NUP88Q99567 MBNL1-223ENST00000498502 5258 ntTSL 5 BASIC3.83□□□□□ -1.8
NUP88Q99567 C5orf46-201ENST00000318315 506 ntAPPRIS P2 TSL 1 (best) BASIC3.83□□□□□ -1.8
NUP88Q99567 RNU6-884P-201ENST00000363889 107 ntBASIC3.83□□□□□ -1.8
NUP88Q99567 RNU6-371P-201ENST00000364283 108 ntBASIC3.83□□□□□ -1.8
NUP88Q99567 Y_RNA.303-201ENST00000364998 94 ntBASIC3.83□□□□□ -1.8
NUP88Q99567 RNA5-8SP4-201ENST00000365096 150 ntBASIC3.83□□□□□ -1.8
NUP88Q99567 TRAV39-201ENST00000390466 331 ntAPPRIS P1 BASIC3.83□□□□□ -1.8
NUP88Q99567 SNORA48.5-201ENST00000391143 135 ntBASIC3.83□□□□□ -1.8
NUP88Q99567 NDUFB4P4-201ENST00000404822 243 ntBASIC3.83□□□□□ -1.8
NUP88Q99567 AL159169.1-201ENST00000421119 127 ntBASIC3.83□□□□□ -1.8
NUP88Q99567 AC099548.1-201ENST00000421443 426 ntBASIC3.83□□□□□ -1.8
NUP88Q99567 AL645937.1-202ENST00000421799 937 ntBASIC3.83□□□□□ -1.8
NUP88Q99567 TOMM20P4-201ENST00000427861 435 ntBASIC3.83□□□□□ -1.8
NUP88Q99567 HMGB3P8-201ENST00000449709 577 ntBASIC3.83□□□□□ -1.8
NUP88Q99567 RPS4XP2-201ENST00000458402 793 ntBASIC3.83□□□□□ -1.8
NUP88Q99567 snoU13.28-201ENST00000459235 104 ntBASIC3.83□□□□□ -1.8
NUP88Q99567 RNU6-1208P-201ENST00000459588 107 ntBASIC3.83□□□□□ -1.8
NUP88Q99567 DYNLL1P5-201ENST00000467158 270 ntBASIC3.83□□□□□ -1.8
NUP88Q99567 RPL23AP14-201ENST00000468281 468 ntBASIC3.83□□□□□ -1.8
NUP88Q99567 AC008948.1-201ENST00000506058 325 ntTSL 2 BASIC3.83□□□□□ -1.8
NUP88Q99567 AC016556.1-201ENST00000510004 935 ntTSL 2 BASIC3.83□□□□□ -1.8
NUP88Q99567 AC008716.1-201ENST00000511084 513 ntBASIC3.83□□□□□ -1.8
NUP88Q99567 Y_RNA.665-201ENST00000516177 98 ntBASIC3.83□□□□□ -1.8
NUP88Q99567 RNU6-572P-201ENST00000516724 80 ntBASIC3.83□□□□□ -1.8
NUP88Q99567 SNORA31.19-201ENST00000517079 126 ntBASIC3.83□□□□□ -1.8
NUP88Q99567 AC145141.2-201ENST00000518473 501 ntTSL 3 BASIC3.83□□□□□ -1.8
NUP88Q99567 HIGD1AP1-201ENST00000550979 275 ntBASIC3.83□□□□□ -1.8
NUP88Q99567 VN1R80P-201ENST00000597126 338 ntBASIC3.83□□□□□ -1.8
NUP88Q99567 RDM1-219ENST00000615378 542 ntTSL 3 BASIC3.83□□□□□ -1.8
NUP88Q99567 CYSLTR2-201ENST00000282018 4672 ntAPPRIS P1 BASIC3.83□□□□□ -1.8
NUP88Q99567 TET2-204ENST00000413648 4973 ntTSL 1 (best) BASIC3.83□□□□□ -1.8
NUP88Q99567 LRRC39-201ENST00000342895 1881 ntAPPRIS P1 TSL 5 BASIC3.83□□□□□ -1.8
NUP88Q99567 IL6ST-205ENST00000381294 2574 ntTSL 1 (best) BASIC3.83□□□□□ -1.8
NUP88Q99567 FAM111A-207ENST00000531147 3996 ntAPPRIS P1 TSL 1 (best) BASIC3.83□□□□□ -1.8
NUP88Q99567 SNHG14-215ENST00000551631 4008 ntTSL 5 BASIC3.82□□□□□ -1.8
NUP88Q99567 AC058791.1-201ENST00000608412 3198 ntBASIC3.82□□□□□ -1.8
NUP88Q99567 NEB-204ENST00000409198 20637 ntAPPRIS P3 TSL 5 BASIC3.82□□□□□ -1.8
NUP88Q99567 DICER1-203ENST00000526495 10331 ntAPPRIS P1 TSL 5 BASIC3.82□□□□□ -1.8
NUP88Q99567 SPZ1-201ENST00000296739 1868 ntAPPRIS P2 BASIC3.82□□□□□ -1.8
NUP88Q99567 Y_RNA.72-201ENST00000362894 103 ntBASIC3.82□□□□□ -1.8
NUP88Q99567 SPRR2E-201ENST00000368750 678 ntAPPRIS P1 TSL 1 (best) BASIC3.82□□□□□ -1.8
NUP88Q99567 RNU6-658P-201ENST00000384606 106 ntBASIC3.82□□□□□ -1.8
NUP88Q99567 TRAJ17-201ENST00000390520 63 ntAPPRIS P1 BASIC3.82□□□□□ -1.8
NUP88Q99567 RNA5SP38-201ENST00000410750 119 ntBASIC3.82□□□□□ -1.8
NUP88Q99567 AC126124.2-201ENST00000413542 321 ntBASIC3.82□□□□□ -1.8
NUP88Q99567 AL355989.1-202ENST00000419406 408 ntTSL 3 BASIC3.82□□□□□ -1.8
NUP88Q99567 HSPE1P1-201ENST00000421494 318 ntBASIC3.82□□□□□ -1.8
NUP88Q99567 RPL31P12-201ENST00000422587 358 ntBASIC3.82□□□□□ -1.8
NUP88Q99567 NEK4P1-201ENST00000433383 879 ntBASIC3.82□□□□□ -1.8
NUP88Q99567 LINC01650-201ENST00000438093 602 ntTSL 2 BASIC3.82□□□□□ -1.8
NUP88Q99567 AC006028.1-201ENST00000438379 402 ntBASIC3.82□□□□□ -1.8
NUP88Q99567 AC012070.1-201ENST00000442062 427 ntTSL 3 BASIC3.82□□□□□ -1.8
NUP88Q99567 RPL7P12-201ENST00000446719 750 ntBASIC3.82□□□□□ -1.8
NUP88Q99567 AL360271.2-201ENST00000447710 161 ntBASIC3.82□□□□□ -1.8
NUP88Q99567 RPL37P4-201ENST00000448908 268 ntBASIC3.82□□□□□ -1.8
NUP88Q99567 AL583843.1-201ENST00000456070 346 ntBASIC3.82□□□□□ -1.8
NUP88Q99567 RNU7-167P-201ENST00000459160 62 ntBASIC3.82□□□□□ -1.8
NUP88Q99567 AC022493.1-201ENST00000492984 337 ntBASIC3.82□□□□□ -1.8
NUP88Q99567 MTND3P25-201ENST00000509243 135 ntBASIC3.82□□□□□ -1.8
NUP88Q99567 AC010486.1-201ENST00000511793 424 ntBASIC3.82□□□□□ -1.8
NUP88Q99567 AP000867.2-201ENST00000532468 320 ntBASIC3.82□□□□□ -1.8
NUP88Q99567 AC009320.1-201ENST00000549070 349 ntTSL 3 BASIC3.82□□□□□ -1.8
NUP88Q99567 OR11H5P-201ENST00000554039 926 ntBASIC3.82□□□□□ -1.8
NUP88Q99567 MIR5004-201ENST00000579078 107 ntBASIC3.82□□□□□ -1.8
NUP88Q99567 AC073539.2-201ENST00000597113 165 ntBASIC3.82□□□□□ -1.8
NUP88Q99567 AL355598.1-201ENST00000604169 202 ntBASIC3.82□□□□□ -1.8
NUP88Q99567 TOPORSLP1-203ENST00000493279 2871 ntTSL 4 BASIC3.82□□□□□ -1.8
NUP88Q99567 AL353743.1-202ENST00000431724 1695 ntBASIC3.81□□□□□ -1.8
NUP88Q99567 LINC01419-201ENST00000522365 1521 ntTSL 1 (best) BASIC3.81□□□□□ -1.8
NUP88Q99567 PTBP2-211ENST00000609116 12014 ntAPPRIS ALT1 TSL 1 (best) BASIC3.81□□□□□ -1.8
NUP88Q99567 SLC30A6-203ENST00000379343 2354 ntTSL 1 (best) BASIC3.81□□□□□ -1.8
NUP88Q99567 BCLAF3-202ENST00000379682 3217 ntAPPRIS ALT2 TSL 5 BASIC3.81□□□□□ -1.8
Retrieved 100 of 98,524 protein–RNA pairs in 141.5 ms