Protein–RNA interactions for Protein: Q7Z3B4

NUP54, Nucleoporin p54, humanhuman

Predictions only

Length 507 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54Q7Z3B4 GYPB-216ENST00000638448 363 ntAPPRIS P1 TSL 1 (best) BASIC2.8□□□□□ -1.96
NUP54Q7Z3B4 PMS1-215ENST00000447232 2576 ntTSL 2 BASIC2.8□□□□□ -1.96
NUP54Q7Z3B4 AC010889.1-201ENST00000566193 2666 ntBASIC2.79□□□□□ -1.96
NUP54Q7Z3B4 ZNF117-204ENST00000620222 5317 ntAPPRIS P1 TSL 1 (best) BASIC2.79□□□□□ -1.96
NUP54Q7Z3B4 OR4K2-204ENST00000641885 8681 ntAPPRIS P1 BASIC2.79□□□□□ -1.96
NUP54Q7Z3B4 VTRNA1-1-201ENST00000363120 99 ntBASIC2.79□□□□□ -1.96
NUP54Q7Z3B4 Y_RNA.159-201ENST00000363674 87 ntBASIC2.79□□□□□ -1.96
NUP54Q7Z3B4 SNORD115-7-201ENST00000365306 82 ntBASIC2.79□□□□□ -1.96
NUP54Q7Z3B4 AC004870.3-202ENST00000412996 432 ntTSL 3 BASIC2.79□□□□□ -1.96
NUP54Q7Z3B4 OR51A5P-201ENST00000415429 942 ntBASIC2.79□□□□□ -1.96
NUP54Q7Z3B4 AL138737.1-202ENST00000418834 876 ntTSL 3 BASIC2.79□□□□□ -1.96
NUP54Q7Z3B4 SKA2P1-201ENST00000425592 390 ntBASIC2.79□□□□□ -1.96
NUP54Q7Z3B4 CALM2P2-201ENST00000428512 440 ntBASIC2.79□□□□□ -1.96
NUP54Q7Z3B4 AL589823.1-201ENST00000429577 183 ntBASIC2.79□□□□□ -1.96
NUP54Q7Z3B4 RPL23AP83-201ENST00000434984 473 ntBASIC2.79□□□□□ -1.96
NUP54Q7Z3B4 AC002486.1-201ENST00000435098 391 ntBASIC2.79□□□□□ -1.96
NUP54Q7Z3B4 AL451074.3-201ENST00000437709 472 ntBASIC2.79□□□□□ -1.96
NUP54Q7Z3B4 RPS15AP9-201ENST00000439856 381 ntBASIC2.79□□□□□ -1.96
NUP54Q7Z3B4 AC025428.1-201ENST00000444137 403 ntTSL 3 BASIC2.79□□□□□ -1.96
NUP54Q7Z3B4 AC104389.3-201ENST00000445629 235 ntBASIC2.79□□□□□ -1.96
NUP54Q7Z3B4 MTATP6P7-201ENST00000453315 681 ntBASIC2.79□□□□□ -1.96
NUP54Q7Z3B4 AC233279.1-201ENST00000455300 423 ntBASIC2.79□□□□□ -1.96
NUP54Q7Z3B4 AL109763.1-201ENST00000455391 461 ntTSL 2 BASIC2.79□□□□□ -1.96
NUP54Q7Z3B4 Z84488.1-201ENST00000476099 530 ntTSL 2 BASIC2.79□□□□□ -1.96
NUP54Q7Z3B4 RPL37P25-201ENST00000507308 276 ntBASIC2.79□□□□□ -1.96
NUP54Q7Z3B4 LINC01333-201ENST00000508083 724 ntTSL 1 (best) BASIC2.79□□□□□ -1.96
NUP54Q7Z3B4 RNU1-103P-201ENST00000516502 125 ntBASIC2.79□□□□□ -1.96
NUP54Q7Z3B4 RNU6-703P-201ENST00000516946 107 ntBASIC2.79□□□□□ -1.96
NUP54Q7Z3B4 RNU6-685P-201ENST00000517088 95 ntBASIC2.79□□□□□ -1.96
NUP54Q7Z3B4 AC103726.1-201ENST00000520785 474 ntTSL 2 BASIC2.79□□□□□ -1.96
NUP54Q7Z3B4 ASPH-224ENST00000522603 842 ntTSL 1 (best) BASIC2.79□□□□□ -1.96
NUP54Q7Z3B4 AL358937.1-201ENST00000524512 336 ntTSL 2 BASIC2.79□□□□□ -1.96
NUP54Q7Z3B4 FAM92A1P1-201ENST00000528023 890 ntBASIC2.79□□□□□ -1.96
NUP54Q7Z3B4 RANP3-201ENST00000530970 276 ntBASIC2.79□□□□□ -1.96
NUP54Q7Z3B4 OR5AL2P-201ENST00000532185 920 ntBASIC2.79□□□□□ -1.96
NUP54Q7Z3B4 AL352955.1-201ENST00000555490 332 ntTSL 3 BASIC2.79□□□□□ -1.96
NUP54Q7Z3B4 MIR1273C-201ENST00000578669 77 ntBASIC2.79□□□□□ -1.96
NUP54Q7Z3B4 AC015813.2-201ENST00000578794 711 ntAPPRIS P1 TSL 3 BASIC2.79□□□□□ -1.96
NUP54Q7Z3B4 MIR4775-201ENST00000581168 75 ntBASIC2.79□□□□□ -1.96
NUP54Q7Z3B4 AC100778.1-201ENST00000583579 332 ntTSL 3 BASIC2.79□□□□□ -1.96
NUP54Q7Z3B4 AC009271.1-202ENST00000588803 492 ntTSL 3 BASIC2.79□□□□□ -1.96
NUP54Q7Z3B4 AC002115.1-201ENST00000589603 568 ntTSL 4 BASIC2.79□□□□□ -1.96
NUP54Q7Z3B4 AC130469.1-201ENST00000597256 388 ntTSL 5 BASIC2.79□□□□□ -1.96
NUP54Q7Z3B4 AL391646.1-201ENST00000603860 190 ntBASIC2.79□□□□□ -1.96
NUP54Q7Z3B4 AC025449.1-201ENST00000603896 529 ntBASIC2.79□□□□□ -1.96
NUP54Q7Z3B4 AL158032.1-201ENST00000605401 106 ntBASIC2.79□□□□□ -1.96
NUP54Q7Z3B4 MIR663AHG-231ENST00000609044 590 ntTSL 5 BASIC2.79□□□□□ -1.96
NUP54Q7Z3B4 AC007684.1-201ENST00000609671 477 ntBASIC2.79□□□□□ -1.96
NUP54Q7Z3B4 AC087241.4-201ENST00000612441 480 ntBASIC2.79□□□□□ -1.96
NUP54Q7Z3B4 AL162274.2-201ENST00000614406 332 ntBASIC2.79□□□□□ -1.96
NUP54Q7Z3B4 DLEU1_1.1-201ENST00000618107 190 ntBASIC2.79□□□□□ -1.96
NUP54Q7Z3B4 MIR7157-201ENST00000635801 60 ntBASIC2.79□□□□□ -1.96
NUP54Q7Z3B4 U6.114-201ENST00000636407 96 ntBASIC2.79□□□□□ -1.96
NUP54Q7Z3B4 HMHB1-202ENST00000638299 126 ntAPPRIS P2 TSL 1 (best) BASIC2.79□□□□□ -1.96
NUP54Q7Z3B4 AC093831.2-201ENST00000624393 3427 ntBASIC2.79□□□□□ -1.96
NUP54Q7Z3B4 WDR3-201ENST00000349139 9974 ntAPPRIS P1 TSL 1 (best) BASIC2.79□□□□□ -1.96
NUP54Q7Z3B4 AC009487.2-201ENST00000420969 6821 ntBASIC2.79□□□□□ -1.96
NUP54Q7Z3B4 AC000403.1-201ENST00000613696 3585 ntBASIC2.79□□□□□ -1.96
NUP54Q7Z3B4 CHD9-218ENST00000566029 13110 ntAPPRIS P1 TSL 1 (best) BASIC2.78□□□□□ -1.96
NUP54Q7Z3B4 MCF2-204ENST00000414978 3813 ntAPPRIS ALT2 TSL 5 BASIC2.78□□□□□ -1.96
NUP54Q7Z3B4 AC004520.1-201ENST00000608362 1413 ntBASIC2.78□□□□□ -1.96
NUP54Q7Z3B4 MAP3K2-203ENST00000409947 10992 ntAPPRIS P1 TSL 1 (best) BASIC2.78□□□□□ -1.96
NUP54Q7Z3B4 MTND4P35-201ENST00000604257 1375 ntBASIC2.78□□□□□ -1.96
NUP54Q7Z3B4 NACAP2-201ENST00000318548 624 ntBASIC2.78□□□□□ -1.96
NUP54Q7Z3B4 Y_RNA.1-201ENST00000352915 104 ntBASIC2.78□□□□□ -1.96
NUP54Q7Z3B4 SNORA62.1-201ENST00000364287 154 ntBASIC2.78□□□□□ -1.96
NUP54Q7Z3B4 OR51A4-201ENST00000380373 1002 ntAPPRIS P1 BASIC2.78□□□□□ -1.96
NUP54Q7Z3B4 Y_RNA.517-201ENST00000384551 106 ntBASIC2.78□□□□□ -1.96
NUP54Q7Z3B4 Y_RNA.576-201ENST00000384781 102 ntBASIC2.78□□□□□ -1.96
NUP54Q7Z3B4 TRAJ40-201ENST00000390497 61 ntAPPRIS P1 BASIC2.78□□□□□ -1.96
NUP54Q7Z3B4 RNU4-55P-201ENST00000410731 137 ntBASIC2.78□□□□□ -1.96
NUP54Q7Z3B4 LINC01201-201ENST00000412420 294 ntTSL 3 BASIC2.78□□□□□ -1.96
NUP54Q7Z3B4 AC093157.2-201ENST00000414686 671 ntTSL 5 BASIC2.78□□□□□ -1.96
NUP54Q7Z3B4 LINC00368-201ENST00000422994 650 ntTSL 1 (best) BASIC2.78□□□□□ -1.96
NUP54Q7Z3B4 MTCYBP5-201ENST00000423752 1135 ntBASIC2.78□□□□□ -1.96
NUP54Q7Z3B4 MTCO2P19-201ENST00000427513 598 ntBASIC2.78□□□□□ -1.96
NUP54Q7Z3B4 SUMO1P4-201ENST00000429430 302 ntBASIC2.78□□□□□ -1.96
NUP54Q7Z3B4 AL365258.1-201ENST00000440885 247 ntTSL 3 BASIC2.78□□□□□ -1.96
NUP54Q7Z3B4 BRK1P2-201ENST00000442875 223 ntBASIC2.78□□□□□ -1.96
NUP54Q7Z3B4 AC095032.1-201ENST00000444810 527 ntTSL 3 BASIC2.78□□□□□ -1.96
NUP54Q7Z3B4 LINC01069-201ENST00000452933 546 ntTSL 5 BASIC2.78□□□□□ -1.96
NUP54Q7Z3B4 RN7SL20P-201ENST00000488827 297 ntBASIC2.78□□□□□ -1.96
NUP54Q7Z3B4 LINC01487-202ENST00000490497 423 ntTSL 3 BASIC2.78□□□□□ -1.96
NUP54Q7Z3B4 AC139453.3-201ENST00000493276 369 ntBASIC2.78□□□□□ -1.96
NUP54Q7Z3B4 AC107401.1-201ENST00000503426 685 ntBASIC2.78□□□□□ -1.96
NUP54Q7Z3B4 RBBP4P6-201ENST00000508098 202 ntBASIC2.78□□□□□ -1.96
NUP54Q7Z3B4 SCARNA17.1-201ENST00000516211 143 ntBASIC2.78□□□□□ -1.96
NUP54Q7Z3B4 RNA5SP341-201ENST00000516261 117 ntBASIC2.78□□□□□ -1.96
NUP54Q7Z3B4 SCARNA17.2-201ENST00000516334 143 ntBASIC2.78□□□□□ -1.96
NUP54Q7Z3B4 AC009812.2-201ENST00000517657 457 ntBASIC2.78□□□□□ -1.96
NUP54Q7Z3B4 AC022360.2-201ENST00000522390 456 ntTSL 3 BASIC2.78□□□□□ -1.96
NUP54Q7Z3B4 LINC02386-203ENST00000552182 501 ntTSL 3 BASIC2.78□□□□□ -1.96
NUP54Q7Z3B4 AL157871.3-201ENST00000557231 293 ntBASIC2.78□□□□□ -1.96
NUP54Q7Z3B4 AC024270.4-201ENST00000570202 421 ntTSL 3 BASIC2.78□□□□□ -1.96
NUP54Q7Z3B4 AC016229.1-201ENST00000589242 487 ntTSL 5 BASIC2.78□□□□□ -1.96
NUP54Q7Z3B4 AC024153.1-201ENST00000603103 365 ntBASIC2.78□□□□□ -1.96
NUP54Q7Z3B4 SCARNA17.4-201ENST00000614296 143 ntBASIC2.78□□□□□ -1.96
NUP54Q7Z3B4 AC015540.1-201ENST00000615828 501 ntBASIC2.78□□□□□ -1.96
NUP54Q7Z3B4 AC011155.2-201ENST00000623202 216 ntBASIC2.78□□□□□ -1.96
NUP54Q7Z3B4 LINC01090-203ENST00000632331 466 ntTSL 5 BASIC2.78□□□□□ -1.96
Retrieved 100 of 98,524 protein–RNA pairs in 118.3 ms