Protein–RNA interactions for Protein: Q3V6T2

CCDC88A, Girdin, humanhuman

Predictions only

Length 1,871 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88AQ3V6T2 AC106052.1-201ENST00000608029 497 ntBASIC1.44□□□□□ -2.18
CCDC88AQ3V6T2 AC004908.2-201ENST00000609090 574 ntBASIC1.44□□□□□ -2.18
CCDC88AQ3V6T2 AL627230.6-201ENST00000611129 280 ntBASIC1.44□□□□□ -2.18
CCDC88AQ3V6T2 FP475955.2-201ENST00000623720 458 ntTSL 2 BASIC1.44□□□□□ -2.18
CCDC88AQ3V6T2 OR5T3-201ENST00000303059 1023 ntBASIC1.43□□□□□ -2.18
CCDC88AQ3V6T2 RNU1-148P-201ENST00000384472 162 ntBASIC1.43□□□□□ -2.18
CCDC88AQ3V6T2 AIMP1P2-201ENST00000425294 312 ntBASIC1.43□□□□□ -2.18
CCDC88AQ3V6T2 AC004383.1-201ENST00000438135 289 ntBASIC1.43□□□□□ -2.18
CCDC88AQ3V6T2 RNU7-59P-201ENST00000459101 61 ntBASIC1.43□□□□□ -2.18
CCDC88AQ3V6T2 RNU7-140P-201ENST00000459546 60 ntBASIC1.43□□□□□ -2.18
CCDC88AQ3V6T2 LINC02118-202ENST00000510583 419 ntTSL 3 BASIC1.43□□□□□ -2.18
CCDC88AQ3V6T2 SNORA76.2-201ENST00000517095 137 ntBASIC1.43□□□□□ -2.18
CCDC88AQ3V6T2 LINC01932-201ENST00000520323 573 ntTSL 5 BASIC1.43□□□□□ -2.18
CCDC88AQ3V6T2 AC006199.1-201ENST00000548728 219 ntBASIC1.43□□□□□ -2.18
CCDC88AQ3V6T2 LINC02253-201ENST00000559321 448 ntTSL 2 BASIC1.43□□□□□ -2.18
CCDC88AQ3V6T2 SUB1P4-201ENST00000566062 339 ntBASIC1.43□□□□□ -2.18
CCDC88AQ3V6T2 AP005230.1-201ENST00000585072 675 ntTSL 5 BASIC1.43□□□□□ -2.18
CCDC88AQ3V6T2 AC007038.2-201ENST00000608095 740 ntBASIC1.43□□□□□ -2.18
CCDC88AQ3V6T2 AC013476.2-201ENST00000614456 459 ntBASIC1.43□□□□□ -2.18
CCDC88AQ3V6T2 LINC02211-204ENST00000642024 1070 ntBASIC1.43□□□□□ -2.18
CCDC88AQ3V6T2 KTN1-204ENST00000395311 4516 ntAPPRIS ALT2 TSL 1 (best) BASIC1.43□□□□□ -2.18
CCDC88AQ3V6T2 OR5B3-201ENST00000309403 945 ntAPPRIS P1 BASIC1.43□□□□□ -2.18
CCDC88AQ3V6T2 AC114763.2-201ENST00000412593 826 ntTSL 2 BASIC1.43□□□□□ -2.18
CCDC88AQ3V6T2 AC008850.1-201ENST00000427546 362 ntBASIC1.43□□□□□ -2.18
CCDC88AQ3V6T2 AP001043.2-201ENST00000434589 288 ntTSL 3 BASIC1.43□□□□□ -2.18
CCDC88AQ3V6T2 BBIP1-206ENST00000447005 727 ntAPPRIS P1 TSL 2 BASIC1.43□□□□□ -2.18
CCDC88AQ3V6T2 AL592447.1-201ENST00000447592 540 ntBASIC1.43□□□□□ -2.18
CCDC88AQ3V6T2 LINC01564-201ENST00000448327 566 ntTSL 3 BASIC1.43□□□□□ -2.18
CCDC88AQ3V6T2 XACT-201ENST00000468762 497 ntTSL 5 BASIC1.43□□□□□ -2.18
CCDC88AQ3V6T2 AC012055.2-201ENST00000504167 335 ntTSL 3 BASIC1.43□□□□□ -2.18
CCDC88AQ3V6T2 AC026474.1-201ENST00000562422 428 ntTSL 2 BASIC1.43□□□□□ -2.18
CCDC88AQ3V6T2 RN7SL793P-201ENST00000583259 296 ntBASIC1.43□□□□□ -2.18
CCDC88AQ3V6T2 AC004853.1-201ENST00000604902 698 ntBASIC1.43□□□□□ -2.18
CCDC88AQ3V6T2 OR5B3-202ENST00000641865 1046 ntAPPRIS P1 BASIC1.43□□□□□ -2.18
CCDC88AQ3V6T2 DDX43P2-201ENST00000604753 1354 ntBASIC1.43□□□□□ -2.18
CCDC88AQ3V6T2 RNU1-62P-201ENST00000362599 164 ntBASIC1.42□□□□□ -2.18
CCDC88AQ3V6T2 GSTA3-202ENST00000370968 775 ntTSL 1 (best) BASIC1.42□□□□□ -2.18
CCDC88AQ3V6T2 SNORA40.19-201ENST00000390846 128 ntBASIC1.42□□□□□ -2.18
CCDC88AQ3V6T2 LINC01427-201ENST00000420928 504 ntTSL 3 BASIC1.42□□□□□ -2.18
CCDC88AQ3V6T2 ZNF736P7Y-201ENST00000425158 820 ntBASIC1.42□□□□□ -2.18
CCDC88AQ3V6T2 LINC01037-201ENST00000427337 424 ntTSL 5 BASIC1.42□□□□□ -2.18
CCDC88AQ3V6T2 AL445488.1-202ENST00000430623 545 ntTSL 3 BASIC1.42□□□□□ -2.18
CCDC88AQ3V6T2 RPS15AP5-201ENST00000436276 388 ntBASIC1.42□□□□□ -2.18
CCDC88AQ3V6T2 AC092393.1-201ENST00000439625 742 ntBASIC1.42□□□□□ -2.18
CCDC88AQ3V6T2 MTND2P20-201ENST00000440805 661 ntBASIC1.42□□□□□ -2.18
CCDC88AQ3V6T2 COX6CP18-201ENST00000448769 222 ntBASIC1.42□□□□□ -2.18
CCDC88AQ3V6T2 MTND2P3-201ENST00000452458 470 ntBASIC1.42□□□□□ -2.18
CCDC88AQ3V6T2 PNPLA4P1-201ENST00000458328 305 ntBASIC1.42□□□□□ -2.18
CCDC88AQ3V6T2 RNA5SP384-201ENST00000516615 116 ntBASIC1.42□□□□□ -2.18
CCDC88AQ3V6T2 NRON-201ENST00000517270 370 ntBASIC1.42□□□□□ -2.18
CCDC88AQ3V6T2 AC068880.3-201ENST00000519185 179 ntTSL 5 BASIC1.42□□□□□ -2.18
CCDC88AQ3V6T2 AC087854.1-201ENST00000519706 414 ntBASIC1.42□□□□□ -2.18
CCDC88AQ3V6T2 HIGD1AP17-201ENST00000554576 276 ntBASIC1.42□□□□□ -2.18
CCDC88AQ3V6T2 LINC00933-203ENST00000559812 219 ntBASIC1.42□□□□□ -2.18
CCDC88AQ3V6T2 AC023825.1-201ENST00000566704 1030 ntBASIC1.42□□□□□ -2.18
CCDC88AQ3V6T2 AC138915.2-201ENST00000569776 97 ntBASIC1.42□□□□□ -2.18
CCDC88AQ3V6T2 AC090330.1-201ENST00000588646 764 ntBASIC1.42□□□□□ -2.18
CCDC88AQ3V6T2 AL391813.1-201ENST00000603098 260 ntBASIC1.42□□□□□ -2.18
CCDC88AQ3V6T2 AL583856.2-201ENST00000606298 543 ntBASIC1.42□□□□□ -2.18
CCDC88AQ3V6T2 AL592148.2-201ENST00000612210 372 ntBASIC1.42□□□□□ -2.18
CCDC88AQ3V6T2 SUCLA2P2-201ENST00000417269 1309 ntBASIC1.42□□□□□ -2.18
CCDC88AQ3V6T2 RNU1-78P-201ENST00000391248 165 ntBASIC1.41□□□□□ -2.18
CCDC88AQ3V6T2 CPEB3_ribozyme.1-201ENST00000408115 78 ntBASIC1.41□□□□□ -2.18
CCDC88AQ3V6T2 MTCO2P5-201ENST00000422621 426 ntBASIC1.41□□□□□ -2.18
CCDC88AQ3V6T2 AP1S2P1-201ENST00000457344 379 ntBASIC1.41□□□□□ -2.18
CCDC88AQ3V6T2 AC095056.1-201ENST00000503918 425 ntTSL 3 BASIC1.41□□□□□ -2.18
CCDC88AQ3V6T2 SUB1-206ENST00000506237 908 ntAPPRIS P1 TSL 2 BASIC1.41□□□□□ -2.18
CCDC88AQ3V6T2 RNU6-1261P-201ENST00000517194 104 ntBASIC1.41□□□□□ -2.18
CCDC88AQ3V6T2 AC025871.1-202ENST00000518819 432 ntTSL 3 BASIC1.41□□□□□ -2.18
CCDC88AQ3V6T2 MTCO3P15-201ENST00000526563 574 ntBASIC1.41□□□□□ -2.18
CCDC88AQ3V6T2 AP003181.1-201ENST00000528811 445 ntTSL 3 BASIC1.41□□□□□ -2.18
CCDC88AQ3V6T2 AC007368.1-201ENST00000536422 974 ntTSL 5 BASIC1.41□□□□□ -2.18
CCDC88AQ3V6T2 AL121821.2-201ENST00000556081 394 ntBASIC1.41□□□□□ -2.18
CCDC88AQ3V6T2 AC105245.1-201ENST00000581934 244 ntBASIC1.41□□□□□ -2.18
CCDC88AQ3V6T2 AL357080.1-201ENST00000617394 239 ntBASIC1.41□□□□□ -2.18
CCDC88AQ3V6T2 LINC01111-201ENST00000518732 1663 ntTSL 1 (best) BASIC1.41□□□□□ -2.18
CCDC88AQ3V6T2 LRIF1-203ENST00000494675 1912 ntAPPRIS ALT2 TSL 2 BASIC1.41□□□□□ -2.18
CCDC88AQ3V6T2 MT-CO2-201ENST00000361739 684 ntAPPRIS P1 BASIC1.41□□□□□ -2.18
CCDC88AQ3V6T2 U8.3-201ENST00000363321 132 ntBASIC1.41□□□□□ -2.18
CCDC88AQ3V6T2 NDUFS5P1-201ENST00000405668 289 ntBASIC1.41□□□□□ -2.18
CCDC88AQ3V6T2 AC091153.2-202ENST00000441700 384 ntTSL 3 BASIC1.41□□□□□ -2.18
CCDC88AQ3V6T2 RPL23AP3-201ENST00000453844 468 ntBASIC1.41□□□□□ -2.18
CCDC88AQ3V6T2 TSPY5P-202ENST00000456541 142 ntTSL 3 BASIC1.41□□□□□ -2.18
CCDC88AQ3V6T2 RPL26P9-201ENST00000457466 433 ntBASIC1.41□□□□□ -2.18
CCDC88AQ3V6T2 AC055731.1-201ENST00000474387 401 ntBASIC1.41□□□□□ -2.18
CCDC88AQ3V6T2 AL160314.1-201ENST00000490836 438 ntBASIC1.41□□□□□ -2.18
CCDC88AQ3V6T2 AC113420.1-201ENST00000507903 571 ntBASIC1.41□□□□□ -2.18
CCDC88AQ3V6T2 RN7SKP258-201ENST00000517151 304 ntBASIC1.41□□□□□ -2.18
CCDC88AQ3V6T2 AP005597.4-201ENST00000526762 229 ntBASIC1.41□□□□□ -2.18
CCDC88AQ3V6T2 AL132857.1-201ENST00000555180 708 ntBASIC1.41□□□□□ -2.18
CCDC88AQ3V6T2 AC011451.2-201ENST00000604303 598 ntBASIC1.41□□□□□ -2.18
CCDC88AQ3V6T2 AL121904.1-201ENST00000611894 948 ntTSL 5 BASIC1.41□□□□□ -2.18
CCDC88AQ3V6T2 DPY19L1-208ENST00000612226 607 ntTSL 1 (best) BASIC1.41□□□□□ -2.18
CCDC88AQ3V6T2 U4atac.1-201ENST00000618345 95 ntBASIC1.41□□□□□ -2.18
CCDC88AQ3V6T2 AC121333.1-201ENST00000567488 2709 ntBASIC1.4□□□□□ -2.18
CCDC88AQ3V6T2 Y_RNA.548-201ENST00000384656 105 ntBASIC1.4□□□□□ -2.19
CCDC88AQ3V6T2 TRAJ11-201ENST00000390526 60 ntAPPRIS P1 BASIC1.4□□□□□ -2.19
CCDC88AQ3V6T2 AC092634.6-201ENST00000418558 192 ntBASIC1.4□□□□□ -2.19
CCDC88AQ3V6T2 AL161935.1-201ENST00000420945 421 ntTSL 3 BASIC1.4□□□□□ -2.19
CCDC88AQ3V6T2 AL022400.1-201ENST00000423946 935 ntBASIC1.4□□□□□ -2.19
Retrieved 100 of 98,524 protein–RNA pairs in 133.8 ms