Protein–RNA interactions for Protein: Q3KNS1

PTCHD3, Patched domain-containing protein 3, humanhuman

Predictions only

Length 767 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD3Q3KNS1 TIPARP-AS1-202ENST00000478005 554 ntTSL 4 BASIC3.47□□□□□ -1.85
PTCHD3Q3KNS1 RPL7P47-201ENST00000497299 556 ntBASIC3.47□□□□□ -1.85
PTCHD3Q3KNS1 AC026784.1-201ENST00000507986 352 ntBASIC3.47□□□□□ -1.85
PTCHD3Q3KNS1 AC110768.1-201ENST00000509222 400 ntBASIC3.47□□□□□ -1.85
PTCHD3Q3KNS1 RNA5SP454-201ENST00000517231 127 ntBASIC3.47□□□□□ -1.85
PTCHD3Q3KNS1 IGKV2-23-201ENST00000518729 323 ntBASIC3.47□□□□□ -1.85
PTCHD3Q3KNS1 LINC02545-201ENST00000525381 306 ntTSL 3 BASIC3.47□□□□□ -1.85
PTCHD3Q3KNS1 CASP1P1-201ENST00000526345 212 ntBASIC3.47□□□□□ -1.85
PTCHD3Q3KNS1 AC099793.1-201ENST00000567538 285 ntTSL 3 BASIC3.47□□□□□ -1.85
PTCHD3Q3KNS1 AC012186.2-201ENST00000569353 321 ntTSL 3 BASIC3.47□□□□□ -1.85
PTCHD3Q3KNS1 AC007151.1-201ENST00000572774 483 ntBASIC3.47□□□□□ -1.85
PTCHD3Q3KNS1 AC100830.2-201ENST00000581636 240 ntBASIC3.47□□□□□ -1.85
PTCHD3Q3KNS1 ATG5-207ENST00000613993 733 ntTSL 1 (best) BASIC3.47□□□□□ -1.85
PTCHD3Q3KNS1 PROX1-AS1-244ENST00000630355 599 ntTSL 5 BASIC3.47□□□□□ -1.85
PTCHD3Q3KNS1 TMEM71-202ENST00000377901 1861 ntAPPRIS ALT2 TSL 1 (best) BASIC3.47□□□□□ -1.85
PTCHD3Q3KNS1 KCNJ16-203ENST00000392671 3981 ntAPPRIS P1 TSL 2 BASIC3.46□□□□□ -1.85
PTCHD3Q3KNS1 PSMA5-201ENST00000271308 3729 ntAPPRIS P1 TSL 1 (best) BASIC3.46□□□□□ -1.85
PTCHD3Q3KNS1 SYNE1-201ENST00000341594 26584 ntAPPRIS ALT2 TSL 5 BASIC3.46□□□□□ -1.85
PTCHD3Q3KNS1 SNX10-209ENST00000619420 2361 ntAPPRIS ALT1 TSL 5 BASIC3.46□□□□□ -1.86
PTCHD3Q3KNS1 CRISP3-204ENST00000433368 2205 ntAPPRIS ALT2 TSL 5 BASIC3.46□□□□□ -1.86
PTCHD3Q3KNS1 RNU6-266P-201ENST00000364225 107 ntBASIC3.46□□□□□ -1.86
PTCHD3Q3KNS1 Y_RNA.460-201ENST00000384255 102 ntBASIC3.46□□□□□ -1.86
PTCHD3Q3KNS1 CCDC126-203ENST00000410069 890 ntAPPRIS P1 TSL 1 (best) BASIC3.46□□□□□ -1.86
PTCHD3Q3KNS1 RNU2-68P-201ENST00000410878 191 ntBASIC3.46□□□□□ -1.86
PTCHD3Q3KNS1 CYCSP33-201ENST00000414485 327 ntBASIC3.46□□□□□ -1.86
PTCHD3Q3KNS1 YPEL5P1-201ENST00000419731 367 ntBASIC3.46□□□□□ -1.86
PTCHD3Q3KNS1 SNAP23P1-201ENST00000433229 246 ntBASIC3.46□□□□□ -1.86
PTCHD3Q3KNS1 SNRPEP9-201ENST00000436794 238 ntBASIC3.46□□□□□ -1.86
PTCHD3Q3KNS1 BRK1P2-201ENST00000442875 223 ntBASIC3.46□□□□□ -1.86
PTCHD3Q3KNS1 AC233279.1-201ENST00000455300 423 ntBASIC3.46□□□□□ -1.86
PTCHD3Q3KNS1 AC087884.1-201ENST00000469738 328 ntBASIC3.46□□□□□ -1.86
PTCHD3Q3KNS1 AC117503.1-201ENST00000472241 394 ntBASIC3.46□□□□□ -1.86
PTCHD3Q3KNS1 RN7SL293P-201ENST00000481765 281 ntBASIC3.46□□□□□ -1.86
PTCHD3Q3KNS1 ENSA-210ENST00000503241 574 ntTSL 3 BASIC3.46□□□□□ -1.86
PTCHD3Q3KNS1 AC024022.1-202ENST00000508911 394 ntTSL 2 BASIC3.46□□□□□ -1.86
PTCHD3Q3KNS1 TBCAP3-201ENST00000512475 312 ntBASIC3.46□□□□□ -1.86
PTCHD3Q3KNS1 RN7SKP13-201ENST00000515933 244 ntBASIC3.46□□□□□ -1.86
PTCHD3Q3KNS1 Y_RNA.682-201ENST00000516457 100 ntBASIC3.46□□□□□ -1.86
PTCHD3Q3KNS1 AP006245.1-201ENST00000522549 120 ntBASIC3.46□□□□□ -1.86
PTCHD3Q3KNS1 AC027018.1-202ENST00000534723 383 ntTSL 3 BASIC3.46□□□□□ -1.86
PTCHD3Q3KNS1 AC016866.2-201ENST00000585251 502 ntTSL 2 BASIC3.46□□□□□ -1.86
PTCHD3Q3KNS1 AL356055.1-201ENST00000602528 446 ntBASIC3.46□□□□□ -1.86
PTCHD3Q3KNS1 AC099506.2-201ENST00000623074 221 ntBASIC3.46□□□□□ -1.86
PTCHD3Q3KNS1 U6.105-201ENST00000637379 88 ntBASIC3.46□□□□□ -1.86
PTCHD3Q3KNS1 CCDC30-212ENST00000507855 2445 ntAPPRIS ALT2 TSL 1 (best) BASIC3.46□□□□□ -1.86
PTCHD3Q3KNS1 LRRC49-224ENST00000560691 2531 ntTSL 2 BASIC3.46□□□□□ -1.86
PTCHD3Q3KNS1 FNDC3A-202ENST00000398316 5714 ntTSL 1 (best) BASIC3.45□□□□□ -1.86
PTCHD3Q3KNS1 POLK-217ENST00000515295 1438 ntTSL 1 (best) BASIC3.45□□□□□ -1.86
PTCHD3Q3KNS1 DDX60L-207ENST00000505890 4568 ntTSL 2 BASIC3.45□□□□□ -1.86
PTCHD3Q3KNS1 DTHD1-202ENST00000456874 3365 ntAPPRIS P1 TSL 1 (best) BASIC3.45□□□□□ -1.86
PTCHD3Q3KNS1 NDST3-201ENST00000296499 5961 ntAPPRIS P1 TSL 1 (best) BASIC3.45□□□□□ -1.86
PTCHD3Q3KNS1 AC068647.1-201ENST00000489539 2265 ntBASIC3.45□□□□□ -1.86
PTCHD3Q3KNS1 AC006026.1-201ENST00000444025 1803 ntBASIC3.45□□□□□ -1.86
PTCHD3Q3KNS1 GPRC6A-201ENST00000310357 2860 ntAPPRIS P1 TSL 1 (best) BASIC3.45□□□□□ -1.86
PTCHD3Q3KNS1 RNU6-1252P-201ENST00000363054 104 ntBASIC3.45□□□□□ -1.86
PTCHD3Q3KNS1 CRP-203ENST00000368111 512 ntTSL 3 BASIC3.45□□□□□ -1.86
PTCHD3Q3KNS1 LINC01545-201ENST00000377879 521 ntTSL 1 (best) BASIC3.45□□□□□ -1.86
PTCHD3Q3KNS1 Y_RNA.431-201ENST00000384086 102 ntBASIC3.45□□□□□ -1.86
PTCHD3Q3KNS1 RNU6-217P-201ENST00000384164 104 ntBASIC3.45□□□□□ -1.86
PTCHD3Q3KNS1 MIR183-201ENST00000384958 110 ntBASIC3.45□□□□□ -1.86
PTCHD3Q3KNS1 SNORA11.1-201ENST00000408133 129 ntBASIC3.45□□□□□ -1.86
PTCHD3Q3KNS1 TMEM167AP1-201ENST00000423409 219 ntBASIC3.45□□□□□ -1.86
PTCHD3Q3KNS1 MTND1P14-201ENST00000427400 950 ntBASIC3.45□□□□□ -1.86
PTCHD3Q3KNS1 AL512844.2-201ENST00000433990 593 ntBASIC3.45□□□□□ -1.86
PTCHD3Q3KNS1 AC002386.1-201ENST00000436714 398 ntTSL 2 BASIC3.45□□□□□ -1.86
PTCHD3Q3KNS1 CXorf51B-201ENST00000438525 436 ntAPPRIS P1 TSL 2 BASIC3.45□□□□□ -1.86
PTCHD3Q3KNS1 LINC01710-201ENST00000446002 390 ntTSL 5 BASIC3.45□□□□□ -1.86
PTCHD3Q3KNS1 RPL21P23-201ENST00000446654 460 ntBASIC3.45□□□□□ -1.86
PTCHD3Q3KNS1 MTND1P17-201ENST00000448961 204 ntBASIC3.45□□□□□ -1.86
PTCHD3Q3KNS1 AC107399.1-201ENST00000451226 265 ntBASIC3.45□□□□□ -1.86
PTCHD3Q3KNS1 LINC01077-201ENST00000452288 413 ntTSL 3 BASIC3.45□□□□□ -1.86
PTCHD3Q3KNS1 RNU7-138P-201ENST00000459479 64 ntBASIC3.45□□□□□ -1.86
PTCHD3Q3KNS1 RPS23P3-201ENST00000470993 430 ntBASIC3.45□□□□□ -1.86
PTCHD3Q3KNS1 AC011005.2-201ENST00000487324 359 ntBASIC3.45□□□□□ -1.86
PTCHD3Q3KNS1 RPL39P5-202ENST00000512505 151 ntBASIC3.45□□□□□ -1.86
PTCHD3Q3KNS1 RNU2-27P-201ENST00000516185 142 ntBASIC3.45□□□□□ -1.86
PTCHD3Q3KNS1 MIR892C-201ENST00000516410 77 ntBASIC3.45□□□□□ -1.86
PTCHD3Q3KNS1 SNORA70.18-201ENST00000516696 98 ntBASIC3.45□□□□□ -1.86
PTCHD3Q3KNS1 RNA5SP165-201ENST00000517142 115 ntBASIC3.45□□□□□ -1.86
PTCHD3Q3KNS1 AC009902.1-201ENST00000519351 183 ntBASIC3.45□□□□□ -1.86
PTCHD3Q3KNS1 LINC02055-204ENST00000521034 432 ntTSL 5 BASIC3.45□□□□□ -1.86
PTCHD3Q3KNS1 RNU6-323P-201ENST00000521915 107 ntBASIC3.45□□□□□ -1.86
PTCHD3Q3KNS1 AC025871.1-201ENST00000523935 443 ntTSL 2 BASIC3.45□□□□□ -1.86
PTCHD3Q3KNS1 AC090592.1-203ENST00000533942 575 ntTSL 3 BASIC3.45□□□□□ -1.86
PTCHD3Q3KNS1 AC093027.1-201ENST00000546698 429 ntBASIC3.45□□□□□ -1.86
PTCHD3Q3KNS1 AC007631.1-201ENST00000578545 189 ntTSL 3 BASIC3.45□□□□□ -1.86
PTCHD3Q3KNS1 POLR3GP2-201ENST00000588366 668 ntBASIC3.45□□□□□ -1.86
PTCHD3Q3KNS1 AC004805.2-201ENST00000605382 482 ntBASIC3.45□□□□□ -1.86
PTCHD3Q3KNS1 AC002044.1-201ENST00000606707 158 ntBASIC3.45□□□□□ -1.86
PTCHD3Q3KNS1 FTX_3.1-201ENST00000610451 147 ntBASIC3.45□□□□□ -1.86
PTCHD3Q3KNS1 AL442067.2-201ENST00000614033 363 ntBASIC3.45□□□□□ -1.86
PTCHD3Q3KNS1 AC090574.1-201ENST00000623186 233 ntBASIC3.45□□□□□ -1.86
PTCHD3Q3KNS1 AC027309.3-201ENST00000623419 351 ntBASIC3.45□□□□□ -1.86
PTCHD3Q3KNS1 AP003355.3-201ENST00000623465 114 ntBASIC3.45□□□□□ -1.86
PTCHD3Q3KNS1 UBE2E2-207ENST00000628311 267 ntTSL 5 BASIC3.45□□□□□ -1.86
PTCHD3Q3KNS1 U6.98-201ENST00000637157 84 ntBASIC3.45□□□□□ -1.86
PTCHD3Q3KNS1 CUL1P1-201ENST00000509510 2425 ntBASIC3.45□□□□□ -1.86
PTCHD3Q3KNS1 OR9G4-204ENST00000641668 2608 ntAPPRIS P1 BASIC3.45□□□□□ -1.86
PTCHD3Q3KNS1 CENPJ-205ENST00000545981 4299 ntTSL 2 BASIC3.45□□□□□ -1.86
PTCHD3Q3KNS1 AP001148.1-201ENST00000624124 2359 ntBASIC3.45□□□□□ -1.86
Retrieved 100 of 98,524 protein–RNA pairs in 10.2 ms