Protein–RNA interactions for Protein: Q15459

SF3A1, Splicing factor 3A subunit 1, humanhuman

Known RBP Predictions only

Length 793 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1Q15459 RNU6-1280P-201ENST00000365211 107 ntBASIC4.35□□□□□ -1.71
SF3A1Q15459 RNU5E-7P-201ENST00000365290 117 ntBASIC4.35□□□□□ -1.71
SF3A1Q15459 RNU6-128P-201ENST00000383976 107 ntBASIC4.35□□□□□ -1.71
SF3A1Q15459 MIR767-201ENST00000390228 109 ntBASIC4.35□□□□□ -1.71
SF3A1Q15459 AL356432.1-201ENST00000405809 419 ntBASIC4.35□□□□□ -1.71
SF3A1Q15459 RAB9AP3-201ENST00000412737 573 ntBASIC4.35□□□□□ -1.71
SF3A1Q15459 LINC02264-201ENST00000442020 576 ntTSL 3 BASIC4.35□□□□□ -1.71
SF3A1Q15459 RAB9AP1-201ENST00000449393 573 ntBASIC4.35□□□□□ -1.71
SF3A1Q15459 AC099794.1-201ENST00000450811 447 ntTSL 3 BASIC4.35□□□□□ -1.71
SF3A1Q15459 RN7SL330P-201ENST00000469709 307 ntBASIC4.35□□□□□ -1.71
SF3A1Q15459 AC113155.1-201ENST00000511141 769 ntBASIC4.35□□□□□ -1.71
SF3A1Q15459 RNU6-581P-201ENST00000516214 105 ntBASIC4.35□□□□□ -1.71
SF3A1Q15459 AC022634.1-201ENST00000520765 532 ntBASIC4.35□□□□□ -1.71
SF3A1Q15459 AC022695.1-201ENST00000522089 237 ntBASIC4.35□□□□□ -1.71
SF3A1Q15459 AC104576.1-201ENST00000524225 88 ntBASIC4.35□□□□□ -1.71
SF3A1Q15459 AC021739.1-201ENST00000559631 174 ntBASIC4.35□□□□□ -1.71
SF3A1Q15459 AC138761.3-201ENST00000579993 334 ntBASIC4.35□□□□□ -1.71
SF3A1Q15459 MIR4429-201ENST00000580105 73 ntBASIC4.35□□□□□ -1.71
SF3A1Q15459 MIR3672-201ENST00000584290 82 ntBASIC4.35□□□□□ -1.71
SF3A1Q15459 LINC02210-208ENST00000585118 546 ntTSL 1 (best) BASIC4.35□□□□□ -1.71
SF3A1Q15459 AC025253.1-201ENST00000613623 543 ntBASIC4.35□□□□□ -1.71
SF3A1Q15459 uc_338.15-201ENST00000615470 191 ntBASIC4.35□□□□□ -1.71
SF3A1Q15459 MIR6134-201ENST00000617606 109 ntBASIC4.35□□□□□ -1.71
SF3A1Q15459 5S_rRNA.12-201ENST00000617631 107 ntBASIC4.35□□□□□ -1.71
SF3A1Q15459 AL133216.2-202ENST00000634512 349 ntBASIC4.35□□□□□ -1.71
SF3A1Q15459 ADGRL4-201ENST00000370742 3527 ntAPPRIS P1 TSL 1 (best) BASIC4.35□□□□□ -1.71
SF3A1Q15459 SULT1B1-201ENST00000310613 7115 ntAPPRIS P1 TSL 1 (best) BASIC4.34□□□□□ -1.71
SF3A1Q15459 UTS2-202ENST00000361696 559 ntAPPRIS ALT2 TSL 1 (best) BASIC4.34□□□□□ -1.71
SF3A1Q15459 Y_RNA.184-201ENST00000363884 108 ntBASIC4.34□□□□□ -1.71
SF3A1Q15459 DEFB125-201ENST00000382410 587 ntAPPRIS P1 TSL 1 (best) BASIC4.34□□□□□ -1.71
SF3A1Q15459 RNU6-213P-201ENST00000384051 104 ntBASIC4.34□□□□□ -1.71
SF3A1Q15459 MIR518D-201ENST00000385014 87 ntBASIC4.34□□□□□ -1.71
SF3A1Q15459 PVALB-202ENST00000404171 422 ntTSL 2 BASIC4.34□□□□□ -1.71
SF3A1Q15459 TTTY8-202ENST00000426035 518 ntTSL 1 (best) BASIC4.34□□□□□ -1.71
SF3A1Q15459 AL117339.2-201ENST00000430475 180 ntBASIC4.34□□□□□ -1.71
SF3A1Q15459 AL035634.1-201ENST00000446768 372 ntTSL 2 BASIC4.34□□□□□ -1.71
SF3A1Q15459 LINC01755-201ENST00000455010 453 ntTSL 2 BASIC4.34□□□□□ -1.71
SF3A1Q15459 TTTY8B-202ENST00000455570 518 ntTSL 1 (best) BASIC4.34□□□□□ -1.71
SF3A1Q15459 AC096711.2-201ENST00000510592 454 ntTSL 5 BASIC4.34□□□□□ -1.71
SF3A1Q15459 AC008957.1-201ENST00000510740 478 ntTSL 3 BASIC4.34□□□□□ -1.71
SF3A1Q15459 Y_RNA.682-201ENST00000516457 100 ntBASIC4.34□□□□□ -1.71
SF3A1Q15459 RNU6-1088P-201ENST00000516850 104 ntBASIC4.34□□□□□ -1.71
SF3A1Q15459 AC023632.4-201ENST00000517783 191 ntBASIC4.34□□□□□ -1.71
SF3A1Q15459 AP005597.4-201ENST00000526762 229 ntBASIC4.34□□□□□ -1.71
SF3A1Q15459 AP000777.1-201ENST00000541495 355 ntTSL 3 BASIC4.34□□□□□ -1.71
SF3A1Q15459 AC006199.1-201ENST00000548728 219 ntBASIC4.34□□□□□ -1.71
SF3A1Q15459 AP001496.1-201ENST00000579113 471 ntTSL 4 BASIC4.34□□□□□ -1.71
SF3A1Q15459 LINC01928-201ENST00000591029 504 ntTSL 3 BASIC4.34□□□□□ -1.71
SF3A1Q15459 DMD-201ENST00000288447 3856 ntTSL 1 (best) BASIC4.34□□□□□ -1.71
SF3A1Q15459 RNF38-203ENST00000353739 4945 ntTSL 1 (best) BASIC4.34□□□□□ -1.71
SF3A1Q15459 AC025164.2-202ENST00000499685 5699 ntTSL 3 BASIC4.34□□□□□ -1.71
SF3A1Q15459 LRIF1-203ENST00000494675 1912 ntAPPRIS ALT2 TSL 2 BASIC4.34□□□□□ -1.71
SF3A1Q15459 TUG1-202ENST00000521091 2110 ntTSL 1 (best) BASIC4.34□□□□□ -1.71
SF3A1Q15459 RAD17-202ENST00000305138 3164 ntTSL 1 (best) BASIC4.34□□□□□ -1.72
SF3A1Q15459 IQCH-201ENST00000335894 4208 ntAPPRIS P1 TSL 1 (best) BASIC4.34□□□□□ -1.72
SF3A1Q15459 AGL-205ENST00000370163 7166 ntAPPRIS P1 TSL 1 (best) BASIC4.33□□□□□ -1.72
SF3A1Q15459 RNF17-201ENST00000255324 5119 ntAPPRIS P1 TSL 2 BASIC4.33□□□□□ -1.72
SF3A1Q15459 CCDC168-201ENST00000322527 21466 ntAPPRIS P1 TSL 3 BASIC4.33□□□□□ -1.72
SF3A1Q15459 CCDC30-212ENST00000507855 2445 ntAPPRIS ALT2 TSL 1 (best) BASIC4.33□□□□□ -1.72
SF3A1Q15459 STEAP4-201ENST00000301959 2321 ntTSL 1 (best) BASIC4.33□□□□□ -1.72
SF3A1Q15459 DOCK7-201ENST00000251157 7084 ntAPPRIS ALT2 TSL 5 BASIC4.33□□□□□ -1.72
SF3A1Q15459 RNU6-858P-201ENST00000362436 107 ntBASIC4.33□□□□□ -1.72
SF3A1Q15459 RNU6-562P-201ENST00000362731 107 ntBASIC4.33□□□□□ -1.72
SF3A1Q15459 Y_RNA.212-201ENST00000364177 102 ntBASIC4.33□□□□□ -1.72
SF3A1Q15459 Y_RNA.356-201ENST00000365475 113 ntBASIC4.33□□□□□ -1.72
SF3A1Q15459 RN7SKP202-201ENST00000410439 330 ntBASIC4.33□□□□□ -1.72
SF3A1Q15459 AL096701.2-201ENST00000416920 238 ntBASIC4.33□□□□□ -1.72
SF3A1Q15459 AL139396.1-201ENST00000421137 167 ntBASIC4.33□□□□□ -1.72
SF3A1Q15459 F10-AS1-201ENST00000424635 417 ntTSL 5 BASIC4.33□□□□□ -1.72
SF3A1Q15459 AL157937.1-201ENST00000435092 443 ntTSL 3 BASIC4.33□□□□□ -1.72
SF3A1Q15459 HMGB1P18-201ENST00000438801 619 ntBASIC4.33□□□□□ -1.72
SF3A1Q15459 AC125238.1-201ENST00000448842 249 ntBASIC4.33□□□□□ -1.72
SF3A1Q15459 AL139260.1-202ENST00000456813 441 ntTSL 3 BASIC4.33□□□□□ -1.72
SF3A1Q15459 AC008526.1-201ENST00000509149 338 ntBASIC4.33□□□□□ -1.72
SF3A1Q15459 AC097467.3-212ENST00000512269 568 ntTSL 3 BASIC4.33□□□□□ -1.72
SF3A1Q15459 AC026371.1-201ENST00000551867 419 ntBASIC4.33□□□□□ -1.72
SF3A1Q15459 AL133279.1-202ENST00000556789 456 ntTSL 5 BASIC4.33□□□□□ -1.72
SF3A1Q15459 MIR3186-201ENST00000577404 85 ntBASIC4.33□□□□□ -1.72
SF3A1Q15459 MIR4790-201ENST00000577799 79 ntBASIC4.33□□□□□ -1.72
SF3A1Q15459 AC023043.2-201ENST00000589678 1026 ntBASIC4.33□□□□□ -1.72
SF3A1Q15459 AC080078.1-201ENST00000603643 410 ntTSL 3 BASIC4.33□□□□□ -1.72
SF3A1Q15459 AC104237.2-201ENST00000612456 443 ntBASIC4.33□□□□□ -1.72
SF3A1Q15459 AL138726.1-201ENST00000614873 333 ntBASIC4.33□□□□□ -1.72
SF3A1Q15459 NRDE2-210ENST00000628832 132 ntTSL 5 BASIC4.33□□□□□ -1.72
SF3A1Q15459 AC244205.2-202ENST00000635781 342 ntBASIC4.33□□□□□ -1.72
SF3A1Q15459 FZD3-201ENST00000240093 13736 ntAPPRIS P1 TSL 1 (best) BASIC4.33□□□□□ -1.72
SF3A1Q15459 RTTN-201ENST00000255674 6960 ntTSL 5 BASIC4.33□□□□□ -1.72
SF3A1Q15459 HTR2B-201ENST00000258400 2246 ntAPPRIS P1 TSL 1 (best) BASIC4.33□□□□□ -1.72
SF3A1Q15459 LINC00648-202ENST00000555985 2885 ntTSL 2 BASIC4.32□□□□□ -1.72
SF3A1Q15459 PTER-201ENST00000298942 3448 ntTSL 5 BASIC4.32□□□□□ -1.72
SF3A1Q15459 SMC1B-201ENST00000357450 4201 ntAPPRIS P1 TSL 5 BASIC4.32□□□□□ -1.72
SF3A1Q15459 KCNJ16-203ENST00000392671 3981 ntAPPRIS P1 TSL 2 BASIC4.32□□□□□ -1.72
SF3A1Q15459 SYNE2-202ENST00000344113 21777 ntAPPRIS ALT2 TSL 1 (best) BASIC4.32□□□□□ -1.72
SF3A1Q15459 ZBTB8OSP1-201ENST00000342688 498 ntBASIC4.32□□□□□ -1.72
SF3A1Q15459 RNA5SP283-201ENST00000365604 119 ntBASIC4.32□□□□□ -1.72
SF3A1Q15459 RNU6-1106P-201ENST00000390845 107 ntBASIC4.32□□□□□ -1.72
SF3A1Q15459 AL445529.1-201ENST00000398713 389 ntBASIC4.32□□□□□ -1.72
SF3A1Q15459 AL022329.2-201ENST00000413494 660 ntTSL 5 BASIC4.32□□□□□ -1.72
SF3A1Q15459 AC245291.1-201ENST00000419501 328 ntBASIC4.32□□□□□ -1.72
SF3A1Q15459 AC092660.1-201ENST00000420648 371 ntTSL 2 BASIC4.32□□□□□ -1.72
Retrieved 100 of 98,524 protein–RNA pairs in 111.1 ms