Protein–RNA interactions for Protein: P98160

HSPG2, Basement membrane-specific heparan sulfate proteoglycan core protein, humanhuman

Predictions only

Length 4,391 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HSPG2P98160 LINC02311-202ENST00000556819 477 ntTSL 3 BASIC0.27□□□□□ -2.37
HSPG2P98160 LINC02253-201ENST00000559321 448 ntTSL 2 BASIC0.27□□□□□ -2.37
HSPG2P98160 AC091563.1-202ENST00000574086 522 ntTSL 5 BASIC0.27□□□□□ -2.37
HSPG2P98160 AC008945.2-201ENST00000606056 604 ntBASIC0.27□□□□□ -2.37
HSPG2P98160 AC103710.4-201ENST00000609301 899 ntBASIC0.27□□□□□ -2.37
HSPG2P98160 RNU1-58P-201ENST00000362413 163 ntBASIC0.26□□□□□ -2.37
HSPG2P98160 AL645638.1-201ENST00000440519 361 ntBASIC0.26□□□□□ -2.37
HSPG2P98160 HTR2A-AS1-202ENST00000452352 384 ntTSL 2 BASIC0.26□□□□□ -2.37
HSPG2P98160 OR52A4P-202ENST00000481634 799 ntBASIC0.26□□□□□ -2.37
HSPG2P98160 LINC02501-201ENST00000510420 426 ntTSL 2 BASIC0.26□□□□□ -2.37
HSPG2P98160 MED28P6-201ENST00000558776 231 ntBASIC0.26□□□□□ -2.37
HSPG2P98160 MIR4713-201ENST00000582691 75 ntBASIC0.26□□□□□ -2.37
HSPG2P98160 SERPINI2-209ENST00000616363 1769 ntTSL 5 BASIC0.26□□□□□ -2.37
HSPG2P98160 RNU6-1074P-201ENST00000383995 104 ntBASIC0.26□□□□□ -2.37
HSPG2P98160 OPA1-AS1-201ENST00000433105 492 ntTSL 3 BASIC0.26□□□□□ -2.37
HSPG2P98160 AL606489.2-201ENST00000433886 234 ntBASIC0.26□□□□□ -2.37
HSPG2P98160 RPS15AP27-201ENST00000449183 343 ntBASIC0.26□□□□□ -2.37
HSPG2P98160 snoU13.11-201ENST00000459219 104 ntBASIC0.26□□□□□ -2.37
HSPG2P98160 AP002812.3-201ENST00000527012 551 ntTSL 5 BASIC0.26□□□□□ -2.37
HSPG2P98160 AC055878.1-201ENST00000531858 281 ntTSL 3 BASIC0.26□□□□□ -2.37
HSPG2P98160 AC011260.1-201ENST00000578420 472 ntBASIC0.26□□□□□ -2.37
HSPG2P98160 MIR4661-201ENST00000582720 75 ntBASIC0.26□□□□□ -2.37
HSPG2P98160 AC079791.1-201ENST00000605356 973 ntBASIC0.26□□□□□ -2.37
HSPG2P98160 Hammerhead_HH10.1-201ENST00000620658 125 ntBASIC0.26□□□□□ -2.37
HSPG2P98160 AC109471.3-201ENST00000625219 233 ntTSL 5 BASIC0.26□□□□□ -2.37
HSPG2P98160 MIR676-201ENST00000390702 67 ntBASIC0.26□□□□□ -2.37
HSPG2P98160 SNORD65-201ENST00000391079 73 ntBASIC0.26□□□□□ -2.37
HSPG2P98160 RNU6-733P-201ENST00000410759 104 ntBASIC0.26□□□□□ -2.37
HSPG2P98160 UBE2FP1-201ENST00000416536 447 ntBASIC0.26□□□□□ -2.37
HSPG2P98160 AC093106.2-201ENST00000428212 385 ntBASIC0.26□□□□□ -2.37
HSPG2P98160 OFD1P13Y-201ENST00000431179 1232 ntBASIC0.26□□□□□ -2.37
HSPG2P98160 TRIM60P3Y-201ENST00000432201 673 ntBASIC0.26□□□□□ -2.37
HSPG2P98160 PRPS1P1-201ENST00000445305 876 ntBASIC0.26□□□□□ -2.37
HSPG2P98160 AC018861.2-201ENST00000518078 513 ntTSL 2 BASIC0.26□□□□□ -2.37
HSPG2P98160 HSPE1P19-201ENST00000603327 295 ntBASIC0.26□□□□□ -2.37
HSPG2P98160 AC108676.2-201ENST00000605225 163 ntBASIC0.26□□□□□ -2.37
HSPG2P98160 ANKRD36C-207ENST00000612359 650 ntTSL 1 (best) BASIC0.26□□□□□ -2.37
HSPG2P98160 AC068506.1-202ENST00000613388 545 ntTSL 3 BASIC0.26□□□□□ -2.37
HSPG2P98160 UCA1.1-201ENST00000620952 75 ntBASIC0.26□□□□□ -2.37
HSPG2P98160 SAMSN1-202ENST00000400564 1382 ntTSL 1 (best) BASIC0.25□□□□□ -2.37
HSPG2P98160 AC016716.1-201ENST00000265882 708 ntBASIC0.25□□□□□ -2.37
HSPG2P98160 HSBP1P2-201ENST00000299671 229 ntBASIC0.25□□□□□ -2.37
HSPG2P98160 RNU6-48P-201ENST00000384161 107 ntBASIC0.25□□□□□ -2.37
HSPG2P98160 ZNF365-203ENST00000395249 433 ntTSL 1 (best) BASIC0.25□□□□□ -2.37
HSPG2P98160 AL136372.1-201ENST00000403060 228 ntBASIC0.25□□□□□ -2.37
HSPG2P98160 AC009276.1-201ENST00000422042 253 ntTSL 5 BASIC0.25□□□□□ -2.37
HSPG2P98160 MED14P1-201ENST00000430517 648 ntBASIC0.25□□□□□ -2.37
HSPG2P98160 TTTY20-201ENST00000434487 259 ntTSL 1 (best) BASIC0.25□□□□□ -2.37
HSPG2P98160 TRAPPC2P3-201ENST00000443200 321 ntBASIC0.25□□□□□ -2.37
HSPG2P98160 CHODL-AS1-201ENST00000447175 1117 ntTSL 2 BASIC0.25□□□□□ -2.37
HSPG2P98160 AC109992.2-201ENST00000460977 765 ntTSL 3 BASIC0.25□□□□□ -2.37
HSPG2P98160 TRBVB-201ENST00000477100 408 ntBASIC0.25□□□□□ -2.37
HSPG2P98160 LINC01487-202ENST00000490497 423 ntTSL 3 BASIC0.25□□□□□ -2.37
HSPG2P98160 AC010425.1-201ENST00000511734 554 ntTSL 4 BASIC0.25□□□□□ -2.37
HSPG2P98160 SNORA31.13-201ENST00000516624 135 ntBASIC0.25□□□□□ -2.37
HSPG2P98160 AC090124.2-201ENST00000527727 563 ntTSL 4 BASIC0.25□□□□□ -2.37
HSPG2P98160 AC107954.1-201ENST00000565906 727 ntBASIC0.25□□□□□ -2.37
HSPG2P98160 MIR3609-201ENST00000582661 80 ntBASIC0.25□□□□□ -2.37
HSPG2P98160 AC008751.2-201ENST00000597885 980 ntBASIC0.25□□□□□ -2.37
HSPG2P98160 AL445584.2-201ENST00000614030 616 ntTSL 5 BASIC0.25□□□□□ -2.37
HSPG2P98160 CYLC1-202ENST00000621735 379 ntAPPRIS ALT2 TSL 3 BASIC0.25□□□□□ -2.37
HSPG2P98160 SNORA51.6-201ENST00000384151 125 ntBASIC0.25□□□□□ -2.37
HSPG2P98160 RNU6-39P-201ENST00000384344 107 ntBASIC0.25□□□□□ -2.37
HSPG2P98160 AL356421.1-201ENST00000403255 413 ntBASIC0.25□□□□□ -2.37
HSPG2P98160 RNA5SP118-201ENST00000410385 109 ntBASIC0.25□□□□□ -2.37
HSPG2P98160 MTND4P11-201ENST00000417020 1058 ntBASIC0.25□□□□□ -2.37
HSPG2P98160 AC244023.1-201ENST00000426884 112 ntBASIC0.25□□□□□ -2.37
HSPG2P98160 AL589935.1-212ENST00000450998 525 ntTSL 2 BASIC0.25□□□□□ -2.37
HSPG2P98160 OR6C72P-201ENST00000451403 892 ntBASIC0.25□□□□□ -2.37
HSPG2P98160 RPS27P22-201ENST00000478056 241 ntBASIC0.25□□□□□ -2.37
HSPG2P98160 GIN1-203ENST00000508629 1040 ntTSL 1 (best) BASIC0.25□□□□□ -2.37
HSPG2P98160 AC092470.1-201ENST00000546187 132 ntBASIC0.25□□□□□ -2.37
HSPG2P98160 AC093027.1-201ENST00000546698 429 ntBASIC0.25□□□□□ -2.37
HSPG2P98160 AC126407.1-201ENST00000563044 566 ntTSL 4 BASIC0.25□□□□□ -2.37
HSPG2P98160 AC090371.2-202ENST00000582239 644 ntTSL 5 BASIC0.25□□□□□ -2.37
HSPG2P98160 AC242498.1-201ENST00000604134 111 ntBASIC0.25□□□□□ -2.37
HSPG2P98160 AC093838.1-201ENST00000613014 469 ntBASIC0.25□□□□□ -2.37
HSPG2P98160 AC243994.1-201ENST00000618627 109 ntBASIC0.25□□□□□ -2.37
HSPG2P98160 SNORA9.1-201ENST00000362412 131 ntBASIC0.25□□□□□ -2.37
HSPG2P98160 RNU6-989P-201ENST00000362756 107 ntBASIC0.25□□□□□ -2.37
HSPG2P98160 RNU6ATAC8P-201ENST00000408460 126 ntBASIC0.25□□□□□ -2.37
HSPG2P98160 AL033539.1-201ENST00000427775 743 ntTSL 3 BASIC0.25□□□□□ -2.37
HSPG2P98160 AC009299.3-203ENST00000435692 1096 ntTSL 5 BASIC0.25□□□□□ -2.37
HSPG2P98160 AC064871.1-201ENST00000444562 427 ntTSL 3 BASIC0.25□□□□□ -2.37
HSPG2P98160 AC112492.4-201ENST00000456549 352 ntBASIC0.25□□□□□ -2.37
HSPG2P98160 AC087071.2-201ENST00000483283 575 ntTSL 4 BASIC0.25□□□□□ -2.37
HSPG2P98160 RNF138P1-201ENST00000502765 546 ntBASIC0.25□□□□□ -2.37
HSPG2P98160 CYCTP-201ENST00000504253 315 ntBASIC0.25□□□□□ -2.37
HSPG2P98160 AC098862.1-201ENST00000504991 413 ntBASIC0.25□□□□□ -2.37
HSPG2P98160 CBX3P3-201ENST00000508108 532 ntBASIC0.25□□□□□ -2.37
HSPG2P98160 LINC02174-201ENST00000508977 553 ntTSL 3 BASIC0.25□□□□□ -2.37
HSPG2P98160 AC016065.2-201ENST00000514530 444 ntBASIC0.25□□□□□ -2.37
HSPG2P98160 SNRPGP16-201ENST00000533275 226 ntBASIC0.25□□□□□ -2.37
HSPG2P98160 LINC02301-201ENST00000553760 773 ntTSL 3 BASIC0.25□□□□□ -2.37
HSPG2P98160 AC104365.3-201ENST00000587011 625 ntTSL 5 BASIC0.25□□□□□ -2.37
HSPG2P98160 B3GNTL1P2-201ENST00000603673 288 ntBASIC0.25□□□□□ -2.37
HSPG2P98160 HOXA11-AS1_6.1-201ENST00000620092 179 ntBASIC0.25□□□□□ -2.37
HSPG2P98160 DIRC1-201ENST00000308100 1037 ntAPPRIS P1 TSL 1 (best) BASIC0.24□□□□□ -2.37
HSPG2P98160 HTN3-201ENST00000381057 493 ntAPPRIS ALT2 TSL 2 BASIC0.24□□□□□ -2.37
HSPG2P98160 AC090666.1-201ENST00000578241 445 ntBASIC0.24□□□□□ -2.37
Retrieved 100 of 98,524 protein–RNA pairs in 149.7 ms