Protein–RNA interactions for Protein: P49916

LIG3, DNA ligase 3, humanhuman

Predictions only

Length 1,009 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3P49916 TRAJ40-201ENST00000390497 61 ntAPPRIS P1 BASIC4.48□□□□□ -1.69
LIG3P49916 AL117337.1-201ENST00000412789 444 ntTSL 3 BASIC4.48□□□□□ -1.69
LIG3P49916 MTND3P9-201ENST00000429526 346 ntBASIC4.48□□□□□ -1.69
LIG3P49916 AL358472.1-201ENST00000431295 329 ntBASIC4.48□□□□□ -1.69
LIG3P49916 RPL21P2-201ENST00000440049 481 ntBASIC4.48□□□□□ -1.69
LIG3P49916 LINC01005-202ENST00000451440 531 ntTSL 4 BASIC4.48□□□□□ -1.69
LIG3P49916 OR2AQ1P-201ENST00000451972 200 ntBASIC4.48□□□□□ -1.69
LIG3P49916 AC011276.1-201ENST00000469688 323 ntBASIC4.48□□□□□ -1.69
LIG3P49916 AC093840.1-201ENST00000511599 336 ntBASIC4.48□□□□□ -1.69
LIG3P49916 RNU6-377P-201ENST00000515965 102 ntBASIC4.48□□□□□ -1.69
LIG3P49916 AP001189.6-201ENST00000528781 831 ntTSL 1 (best) BASIC4.48□□□□□ -1.69
LIG3P49916 AC087749.2-201ENST00000583910 352 ntTSL 5 BASIC4.48□□□□□ -1.69
LIG3P49916 SRGNP1-201ENST00000603392 451 ntBASIC4.48□□□□□ -1.69
LIG3P49916 AC062037.2-201ENST00000610137 73 ntBASIC4.48□□□□□ -1.69
LIG3P49916 AC107871.2-201ENST00000612894 502 ntBASIC4.48□□□□□ -1.69
LIG3P49916 SMAD5-AS1_1.1-201ENST00000619886 266 ntBASIC4.48□□□□□ -1.69
LIG3P49916 LGALS13-204ENST00000621475 494 ntAPPRIS ALT2 TSL 5 BASIC4.48□□□□□ -1.69
LIG3P49916 RIMS1-204ENST00000401910 3542 ntTSL 2 BASIC4.48□□□□□ -1.69
LIG3P49916 MTND5P7-201ENST00000413558 1798 ntBASIC4.48□□□□□ -1.69
LIG3P49916 CACNB4-257ENST00000637547 7658 ntTSL 5 BASIC4.47□□□□□ -1.69
LIG3P49916 AC006971.1-201ENST00000407916 4486 ntBASIC4.47□□□□□ -1.69
LIG3P49916 RNU6-874P-201ENST00000362390 105 ntBASIC4.47□□□□□ -1.69
LIG3P49916 RNU4-50P-201ENST00000364361 141 ntBASIC4.47□□□□□ -1.69
LIG3P49916 Y_RNA.276-201ENST00000364732 109 ntBASIC4.47□□□□□ -1.69
LIG3P49916 SNORA62-201ENST00000365493 153 ntBASIC4.47□□□□□ -1.69
LIG3P49916 MIR628-201ENST00000385229 95 ntBASIC4.47□□□□□ -1.69
LIG3P49916 U3.42-201ENST00000408746 214 ntBASIC4.47□□□□□ -1.69
LIG3P49916 RPL17P36-201ENST00000420302 549 ntBASIC4.47□□□□□ -1.69
LIG3P49916 AC011998.1-201ENST00000433403 117 ntBASIC4.47□□□□□ -1.69
LIG3P49916 DYNLT3P2-201ENST00000442517 295 ntBASIC4.47□□□□□ -1.69
LIG3P49916 AP000844.1-201ENST00000446631 577 ntTSL 3 BASIC4.47□□□□□ -1.69
LIG3P49916 RN7SL860P-201ENST00000473738 223 ntBASIC4.47□□□□□ -1.69
LIG3P49916 RPL31P13-201ENST00000484151 370 ntBASIC4.47□□□□□ -1.69
LIG3P49916 GYPA-208ENST00000512064 441 ntTSL 1 (best) BASIC4.47□□□□□ -1.69
LIG3P49916 AC023141.12-201ENST00000512399 199 ntBASIC4.47□□□□□ -1.69
LIG3P49916 RNY3P15-201ENST00000516297 97 ntBASIC4.47□□□□□ -1.69
LIG3P49916 LINC02095-202ENST00000543512 323 ntTSL 3 BASIC4.47□□□□□ -1.69
LIG3P49916 UTS2-201ENST00000054668 420 ntAPPRIS P4 TSL 1 (best) BASIC4.47□□□□□ -1.69
LIG3P49916 SMAD5-AS1_4.1-201ENST00000615561 167 ntBASIC4.47□□□□□ -1.69
LIG3P49916 MIR8062-201ENST00000621515 85 ntBASIC4.47□□□□□ -1.69
LIG3P49916 SCARNA4-202ENST00000625402 129 ntBASIC4.47□□□□□ -1.69
LIG3P49916 KIAA1524-208ENST00000625495 147 ntTSL 5 BASIC4.47□□□□□ -1.69
LIG3P49916 U6.99-201ENST00000637524 83 ntBASIC4.47□□□□□ -1.69
LIG3P49916 GYPB-216ENST00000638448 363 ntAPPRIS P1 TSL 1 (best) BASIC4.47□□□□□ -1.69
LIG3P49916 QSER1-201ENST00000399302 9335 ntAPPRIS P1 TSL 1 (best) BASIC4.47□□□□□ -1.69
LIG3P49916 MFSD8-242ENST00000641690 4199 ntBASIC4.47□□□□□ -1.69
LIG3P49916 SEL1L2-202ENST00000378072 1892 ntTSL 2 BASIC4.47□□□□□ -1.69
LIG3P49916 ARHGAP42-201ENST00000298815 4752 ntAPPRIS P1 TSL 5 BASIC4.47□□□□□ -1.69
LIG3P49916 ARHGAP21-218ENST00000636789 4210 ntTSL 2 BASIC4.47□□□□□ -1.69
LIG3P49916 SPATA31D2P-201ENST00000429999 4388 ntBASIC4.46□□□□□ -1.69
LIG3P49916 GABRB2-203ENST00000393959 7191 ntTSL 1 (best) BASIC4.46□□□□□ -1.69
LIG3P49916 NCK1-204ENST00000469404 2403 ntTSL 2 BASIC4.46□□□□□ -1.69
LIG3P49916 LINC02458-201ENST00000500381 2941 ntTSL 2 BASIC4.46□□□□□ -1.69
LIG3P49916 F8-202ENST00000360256 9059 ntAPPRIS P1 TSL 1 (best) BASIC4.46□□□□□ -1.69
LIG3P49916 OR1C1-202ENST00000641256 3719 ntAPPRIS P1 BASIC4.46□□□□□ -1.69
LIG3P49916 SLITRK5-201ENST00000325089 21103 ntAPPRIS P1 TSL 1 (best) BASIC4.46□□□□□ -1.7
LIG3P49916 PIKFYVE-201ENST00000264380 9901 ntAPPRIS P1 TSL 1 (best) BASIC4.46□□□□□ -1.7
LIG3P49916 FLG-AS1-205ENST00000445097 2857 ntTSL 1 (best) BASIC4.46□□□□□ -1.7
LIG3P49916 EIF2S1-202ENST00000466499 2390 ntAPPRIS P1 TSL 1 (best) BASIC4.46□□□□□ -1.7
LIG3P49916 C6orf10-207ENST00000533191 2170 ntAPPRIS ALT2 TSL 1 (best) BASIC4.46□□□□□ -1.7
LIG3P49916 AC027290.2-201ENST00000623210 18662 ntBASIC4.46□□□□□ -1.7
LIG3P49916 RNU6-600P-201ENST00000362524 99 ntBASIC4.46□□□□□ -1.7
LIG3P49916 RNU6-428P-201ENST00000362942 107 ntBASIC4.46□□□□□ -1.7
LIG3P49916 SNORA51.11-201ENST00000384442 131 ntBASIC4.46□□□□□ -1.7
LIG3P49916 Y_RNA.551-201ENST00000384661 102 ntBASIC4.46□□□□□ -1.7
LIG3P49916 SNORA69.1-201ENST00000390904 137 ntBASIC4.46□□□□□ -1.7
LIG3P49916 RPL21P1-201ENST00000399532 476 ntBASIC4.46□□□□□ -1.7
LIG3P49916 DEFB116-201ENST00000400549 309 ntAPPRIS P1 TSL 1 (best) BASIC4.46□□□□□ -1.7
LIG3P49916 SNRPG-202ENST00000413456 398 ntTSL 3 BASIC4.46□□□□□ -1.7
LIG3P49916 MTCO3P19-201ENST00000415864 321 ntBASIC4.46□□□□□ -1.7
LIG3P49916 USP9YP16-201ENST00000430287 407 ntBASIC4.46□□□□□ -1.7
LIG3P49916 GSTA9P-202ENST00000448991 521 ntTSL 3 BASIC4.46□□□□□ -1.7
LIG3P49916 SNRPG-205ENST00000449935 428 ntTSL 1 (best) BASIC4.46□□□□□ -1.7
LIG3P49916 MIR4435-2HG-213ENST00000451884 423 ntTSL 3 BASIC4.46□□□□□ -1.7
LIG3P49916 USP9YP23-201ENST00000455085 407 ntBASIC4.46□□□□□ -1.7
LIG3P49916 AL354824.2-201ENST00000458004 446 ntTSL 3 BASIC4.46□□□□□ -1.7
LIG3P49916 RN7SL810P-201ENST00000493031 276 ntBASIC4.46□□□□□ -1.7
LIG3P49916 AL136038.2-201ENST00000553983 283 ntTSL 3 BASIC4.46□□□□□ -1.7
LIG3P49916 AC005476.1-201ENST00000554427 397 ntBASIC4.46□□□□□ -1.7
LIG3P49916 LINC01533-202ENST00000588694 632 ntTSL 2 BASIC4.46□□□□□ -1.7
LIG3P49916 AC005046.1-201ENST00000608515 625 ntBASIC4.46□□□□□ -1.7
LIG3P49916 AC009318.2-201ENST00000610917 651 ntBASIC4.46□□□□□ -1.7
LIG3P49916 NCBP1-205ENST00000629069 249 ntTSL 5 BASIC4.46□□□□□ -1.7
LIG3P49916 SLCO1B1-201ENST00000256958 2229 ntAPPRIS P1 TSL 1 (best) BASIC4.46□□□□□ -1.7
LIG3P49916 IFT80-220ENST00000483465 4044 ntTSL 1 (best) BASIC4.46□□□□□ -1.7
LIG3P49916 ECT2-211ENST00000441497 2825 ntAPPRIS P2 TSL 1 (best) BASIC4.45□□□□□ -1.7
LIG3P49916 AC010300.1-201ENST00000600671 5134 ntBASIC4.45□□□□□ -1.7
LIG3P49916 ACTR6-212ENST00000552376 1659 ntTSL 5 BASIC4.45□□□□□ -1.7
LIG3P49916 LINC01239-202ENST00000436786 2347 ntTSL 2 BASIC4.45□□□□□ -1.7
LIG3P49916 WDR72-204ENST00000559418 3602 ntTSL 5 BASIC4.45□□□□□ -1.7
LIG3P49916 GDAP2-202ENST00000369443 8828 ntAPPRIS P1 TSL 2 BASIC4.45□□□□□ -1.7
LIG3P49916 ZNF705E-201ENST00000525199 3442 ntAPPRIS P1 TSL 2 BASIC4.45□□□□□ -1.7
LIG3P49916 CNTN6-205ENST00000446702 4513 ntAPPRIS P1 TSL 1 (best) BASIC4.45□□□□□ -1.7
LIG3P49916 RNA5SP509-201ENST00000364577 119 ntBASIC4.45□□□□□ -1.7
LIG3P49916 RNA5SP189-201ENST00000364920 115 ntBASIC4.45□□□□□ -1.7
LIG3P49916 RNU6-140P-201ENST00000384566 108 ntBASIC4.45□□□□□ -1.7
LIG3P49916 MIR493-201ENST00000385254 89 ntBASIC4.45□□□□□ -1.7
LIG3P49916 MS4A4E-201ENST00000398984 479 ntTSL 5 BASIC4.45□□□□□ -1.7
LIG3P49916 AC104462.2-201ENST00000418402 271 ntTSL 3 BASIC4.45□□□□□ -1.7
LIG3P49916 MS4A4E-203ENST00000425663 350 ntTSL 1 (best) BASIC4.45□□□□□ -1.7
Retrieved 100 of 98,524 protein–RNA pairs in 146.7 ms