Protein–RNA interactions for Protein: P28356

HOXD9, Homeobox protein Hox-D9, humanhuman

Predicted RBP Predictions only

Length 352 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD9P28356 IARS-201ENST00000375627 697 ntTSL 3 BASIC3.39□□□□□ -1.87
HOXD9P28356 Y_RNA.395-201ENST00000383945 109 ntBASIC3.39□□□□□ -1.87
HOXD9P28356 RNU6-474P-201ENST00000384243 107 ntBASIC3.39□□□□□ -1.87
HOXD9P28356 RNU6-738P-201ENST00000384531 106 ntBASIC3.39□□□□□ -1.87
HOXD9P28356 RNU6-14P-201ENST00000384630 106 ntBASIC3.39□□□□□ -1.87
HOXD9P28356 MIR559-201ENST00000385188 96 ntBASIC3.39□□□□□ -1.87
HOXD9P28356 RNY4P36-201ENST00000391116 96 ntBASIC3.39□□□□□ -1.87
HOXD9P28356 AP000567.1-201ENST00000406413 156 ntBASIC3.39□□□□□ -1.87
HOXD9P28356 RNU6ATAC16P-201ENST00000408591 138 ntBASIC3.39□□□□□ -1.87
HOXD9P28356 AL356968.1-201ENST00000416622 474 ntBASIC3.39□□□□□ -1.87
HOXD9P28356 ACTR3BP6-201ENST00000422332 1241 ntBASIC3.39□□□□□ -1.87
HOXD9P28356 LINC01510-201ENST00000441991 468 ntTSL 3 BASIC3.39□□□□□ -1.87
HOXD9P28356 RPL23AP62-201ENST00000463396 453 ntBASIC3.39□□□□□ -1.87
HOXD9P28356 BCL2L15-204ENST00000471267 267 ntTSL 1 (best) BASIC3.39□□□□□ -1.87
HOXD9P28356 AC027575.1-201ENST00000481064 460 ntBASIC3.39□□□□□ -1.87
HOXD9P28356 AC106872.2-201ENST00000494303 480 ntBASIC3.39□□□□□ -1.87
HOXD9P28356 RN7SL504P-201ENST00000494496 287 ntBASIC3.39□□□□□ -1.87
HOXD9P28356 RPL7P47-201ENST00000497299 556 ntBASIC3.39□□□□□ -1.87
HOXD9P28356 VN1R104P-201ENST00000505115 1009 ntBASIC3.39□□□□□ -1.87
HOXD9P28356 RNU6-123P-201ENST00000516163 102 ntBASIC3.39□□□□□ -1.87
HOXD9P28356 RNA5SP454-201ENST00000517231 127 ntBASIC3.39□□□□□ -1.87
HOXD9P28356 AC090592.1-203ENST00000533942 575 ntTSL 3 BASIC3.39□□□□□ -1.87
HOXD9P28356 ELOCP31-201ENST00000540463 467 ntBASIC3.39□□□□□ -1.87
HOXD9P28356 AP000763.2-201ENST00000540641 163 ntBASIC3.39□□□□□ -1.87
HOXD9P28356 AC090115.3-201ENST00000553218 849 ntBASIC3.39□□□□□ -1.87
HOXD9P28356 AF099810.1-201ENST00000554219 525 ntTSL 3 BASIC3.39□□□□□ -1.87
HOXD9P28356 MED28P6-201ENST00000558776 231 ntBASIC3.39□□□□□ -1.87
HOXD9P28356 AC092120.1-201ENST00000562211 420 ntTSL 3 BASIC3.39□□□□□ -1.87
HOXD9P28356 MIR3171-201ENST00000584270 74 ntBASIC3.39□□□□□ -1.87
HOXD9P28356 AC012493.2-201ENST00000595083 291 ntBASIC3.39□□□□□ -1.87
HOXD9P28356 BDH2P1-201ENST00000602288 736 ntBASIC3.39□□□□□ -1.87
HOXD9P28356 AC104763.2-201ENST00000604179 382 ntBASIC3.39□□□□□ -1.87
HOXD9P28356 AC079610.3-201ENST00000606960 147 ntTSL 3 BASIC3.39□□□□□ -1.87
HOXD9P28356 RASSF8-215ENST00000611440 852 ntTSL 5 BASIC3.39□□□□□ -1.87
HOXD9P28356 RNVU1-4-201ENST00000612985 164 ntBASIC3.39□□□□□ -1.87
HOXD9P28356 AC084781.2-201ENST00000615568 161 ntBASIC3.39□□□□□ -1.87
HOXD9P28356 AL359757.2-201ENST00000624309 274 ntBASIC3.39□□□□□ -1.87
HOXD9P28356 MTND4LP32-201ENST00000636111 270 ntBASIC3.39□□□□□ -1.87
HOXD9P28356 RNF128-202ENST00000324342 2654 ntTSL 1 (best) BASIC3.39□□□□□ -1.87
HOXD9P28356 WRN-201ENST00000298139 5215 ntAPPRIS P1 TSL 1 (best) BASIC3.39□□□□□ -1.87
HOXD9P28356 DCUN1D1-201ENST00000292782 7954 ntAPPRIS P1 TSL 1 (best) BASIC3.39□□□□□ -1.87
HOXD9P28356 FAM214A-204ENST00000546305 3697 ntTSL 2 BASIC3.39□□□□□ -1.87
HOXD9P28356 D21S2088E-201ENST00000262354 1725 ntTSL 1 (best) BASIC3.39□□□□□ -1.87
HOXD9P28356 SLC2A2-201ENST00000314251 3210 ntAPPRIS P1 TSL 1 (best) BASIC3.38□□□□□ -1.87
HOXD9P28356 KCNJ16-203ENST00000392671 3981 ntAPPRIS P1 TSL 2 BASIC3.38□□□□□ -1.87
HOXD9P28356 WNK3-205ENST00000620763 5400 ntTSL 5 BASIC3.38□□□□□ -1.87
HOXD9P28356 SERPINA7-201ENST00000327674 2642 ntAPPRIS P1 TSL 1 (best) BASIC3.38□□□□□ -1.87
HOXD9P28356 AP002088.1-201ENST00000382740 395 ntBASIC3.38□□□□□ -1.87
HOXD9P28356 AL360182.1-201ENST00000397433 468 ntBASIC3.38□□□□□ -1.87
HOXD9P28356 MTCYBP4-201ENST00000401524 249 ntBASIC3.38□□□□□ -1.87
HOXD9P28356 RPL5P18-201ENST00000406671 891 ntBASIC3.38□□□□□ -1.87
HOXD9P28356 MIR548F5-201ENST00000408421 86 ntBASIC3.38□□□□□ -1.87
HOXD9P28356 RNA5SP229-201ENST00000410809 99 ntBASIC3.38□□□□□ -1.87
HOXD9P28356 AC051618.1-201ENST00000414295 207 ntTSL 3 BASIC3.38□□□□□ -1.87
HOXD9P28356 BX682237.1-201ENST00000415016 335 ntBASIC3.38□□□□□ -1.87
HOXD9P28356 LINC01349-201ENST00000416343 497 ntTSL 3 BASIC3.38□□□□□ -1.87
HOXD9P28356 AL109947.1-201ENST00000423747 382 ntTSL 2 BASIC3.38□□□□□ -1.87
HOXD9P28356 AL591704.1-201ENST00000432574 275 ntBASIC3.38□□□□□ -1.87
HOXD9P28356 FABP5P14-201ENST00000437273 393 ntBASIC3.38□□□□□ -1.87
HOXD9P28356 AC004691.1-201ENST00000440376 547 ntTSL 3 BASIC3.38□□□□□ -1.87
HOXD9P28356 Y_RNA.631-201ENST00000459607 101 ntBASIC3.38□□□□□ -1.87
HOXD9P28356 TRBV1-201ENST00000476502 284 ntBASIC3.38□□□□□ -1.87
HOXD9P28356 HIGD1AP13-201ENST00000509878 289 ntBASIC3.38□□□□□ -1.87
HOXD9P28356 LINC02118-202ENST00000510583 419 ntTSL 3 BASIC3.38□□□□□ -1.87
HOXD9P28356 SNORA31.3-201ENST00000516029 96 ntBASIC3.38□□□□□ -1.87
HOXD9P28356 SNORA31.22-201ENST00000517204 135 ntBASIC3.38□□□□□ -1.87
HOXD9P28356 AC009320.1-201ENST00000549070 349 ntTSL 3 BASIC3.38□□□□□ -1.87
HOXD9P28356 HIGD1AP1-201ENST00000550979 275 ntBASIC3.38□□□□□ -1.87
HOXD9P28356 IMMP1LP2-201ENST00000552954 492 ntBASIC3.38□□□□□ -1.87
HOXD9P28356 OR4H12P-201ENST00000556269 907 ntBASIC3.38□□□□□ -1.87
HOXD9P28356 RPL23AP84-201ENST00000571193 464 ntBASIC3.38□□□□□ -1.87
HOXD9P28356 MIR5004-201ENST00000579078 107 ntBASIC3.38□□□□□ -1.87
HOXD9P28356 AP001972.3-202ENST00000603012 375 ntTSL 3 BASIC3.38□□□□□ -1.87
HOXD9P28356 CYP2C61P-201ENST00000604072 290 ntBASIC3.38□□□□□ -1.87
HOXD9P28356 AL670379.10-201ENST00000604330 253 ntBASIC3.38□□□□□ -1.87
HOXD9P28356 AL670379.9-201ENST00000605428 253 ntBASIC3.38□□□□□ -1.87
HOXD9P28356 AL080274.1-201ENST00000605565 220 ntBASIC3.38□□□□□ -1.87
HOXD9P28356 AC124303.1-201ENST00000605703 360 ntBASIC3.38□□□□□ -1.87
HOXD9P28356 SNORD39.4-201ENST00000620099 78 ntBASIC3.38□□□□□ -1.87
HOXD9P28356 AL591030.1-201ENST00000626131 627 ntTSL 3 BASIC3.38□□□□□ -1.87
HOXD9P28356 PPIP5K2-201ENST00000321521 15407 ntAPPRIS P3 TSL 5 BASIC3.38□□□□□ -1.87
HOXD9P28356 ERBIN-201ENST00000284037 8647 ntTSL 1 (best) BASIC3.38□□□□□ -1.87
HOXD9P28356 ZNF804B-202ENST00000611114 3968 ntTSL 5 BASIC3.38□□□□□ -1.87
HOXD9P28356 SULT1B1-201ENST00000310613 7115 ntAPPRIS P1 TSL 1 (best) BASIC3.38□□□□□ -1.87
HOXD9P28356 ERBIN-203ENST00000380938 4701 ntTSL 2 BASIC3.38□□□□□ -1.87
HOXD9P28356 MBNL3-204ENST00000370853 2661 ntAPPRIS P4 TSL 1 (best) BASIC3.37□□□□□ -1.87
HOXD9P28356 AP001148.1-201ENST00000624124 2359 ntBASIC3.37□□□□□ -1.87
HOXD9P28356 Y_RNA.135-201ENST00000363439 95 ntBASIC3.37□□□□□ -1.87
HOXD9P28356 SNORD116-11-201ENST00000383882 92 ntBASIC3.37□□□□□ -1.87
HOXD9P28356 Y_RNA.422-201ENST00000384054 114 ntBASIC3.37□□□□□ -1.87
HOXD9P28356 SNORD70.1-201ENST00000391007 85 ntBASIC3.37□□□□□ -1.87
HOXD9P28356 RHEBP3-201ENST00000411920 351 ntBASIC3.37□□□□□ -1.87
HOXD9P28356 RPL37P10-201ENST00000412884 288 ntBASIC3.37□□□□□ -1.87
HOXD9P28356 RAC1P3-201ENST00000416129 580 ntBASIC3.37□□□□□ -1.87
HOXD9P28356 AL355989.1-202ENST00000419406 408 ntTSL 3 BASIC3.37□□□□□ -1.87
HOXD9P28356 YPEL5P1-201ENST00000419731 367 ntBASIC3.37□□□□□ -1.87
HOXD9P28356 AL139396.1-201ENST00000421137 167 ntBASIC3.37□□□□□ -1.87
HOXD9P28356 Z82205.1-201ENST00000428456 297 ntBASIC3.37□□□□□ -1.87
HOXD9P28356 NEFMP1-201ENST00000443423 1006 ntBASIC3.37□□□□□ -1.87
HOXD9P28356 AC104058.1-201ENST00000448028 297 ntBASIC3.37□□□□□ -1.87
Retrieved 100 of 98,524 protein–RNA pairs in 109.3 ms