Protein–RNA interactions for Protein: P28068

HLA-DMB, HLA class II histocompatibility antigen, DM beta chain, humanhuman

Predictions only

Length 263 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DMBP28068 MTCO1P53-201ENST00000441633 699 ntBASIC1.27□□□□□ -2.21
HLA-DMBP28068 AL050303.1-201ENST00000444356 458 ntTSL 2 BASIC1.27□□□□□ -2.21
HLA-DMBP28068 AC009299.3-202ENST00000445372 538 ntTSL 3 BASIC1.27□□□□□ -2.21
HLA-DMBP28068 RPL23AP6-201ENST00000446637 472 ntBASIC1.27□□□□□ -2.21
HLA-DMBP28068 AL359095.1-201ENST00000457383 635 ntTSL 3 BASIC1.27□□□□□ -2.21
HLA-DMBP28068 TH2LCRR-203ENST00000457489 439 ntTSL 3 BASIC1.27□□□□□ -2.21
HLA-DMBP28068 AC079203.1-201ENST00000487972 404 ntBASIC1.27□□□□□ -2.21
HLA-DMBP28068 RNA5SP458-201ENST00000516188 119 ntBASIC1.27□□□□□ -2.21
HLA-DMBP28068 RNU6-970P-201ENST00000516312 107 ntBASIC1.27□□□□□ -2.21
HLA-DMBP28068 DEFB131D-201ENST00000526803 184 ntBASIC1.27□□□□□ -2.21
HLA-DMBP28068 AL450442.1-201ENST00000554042 854 ntTSL 1 (best) BASIC1.27□□□□□ -2.21
HLA-DMBP28068 AC012213.3-201ENST00000577199 777 ntBASIC1.27□□□□□ -2.21
HLA-DMBP28068 AL713866.2-201ENST00000603579 219 ntBASIC1.27□□□□□ -2.21
HLA-DMBP28068 FP475955.2-201ENST00000623720 458 ntTSL 2 BASIC1.27□□□□□ -2.21
HLA-DMBP28068 AC068631.1-221ENST00000626006 592 ntTSL 5 BASIC1.27□□□□□ -2.21
HLA-DMBP28068 ZGRF1-203ENST00000445203 6529 ntAPPRIS P1 TSL 5 BASIC1.27□□□□□ -2.21
HLA-DMBP28068 SHOC2-201ENST00000265277 3691 ntTSL 2 BASIC1.27□□□□□ -2.21
HLA-DMBP28068 MRPL42-202ENST00000393128 1983 ntAPPRIS ALT1 TSL 3 BASIC1.27□□□□□ -2.21
HLA-DMBP28068 RNU6-188P-201ENST00000364207 107 ntBASIC1.26□□□□□ -2.21
HLA-DMBP28068 CD80-202ENST00000383669 771 ntTSL 1 (best) BASIC1.26□□□□□ -2.21
HLA-DMBP28068 RNA5SP213-201ENST00000391031 106 ntBASIC1.26□□□□□ -2.21
HLA-DMBP28068 AL627390.1-201ENST00000396055 340 ntBASIC1.26□□□□□ -2.21
HLA-DMBP28068 AC127391.1-201ENST00000411737 98 ntBASIC1.26□□□□□ -2.21
HLA-DMBP28068 AL158840.1-201ENST00000414132 523 ntTSL 3 BASIC1.26□□□□□ -2.21
HLA-DMBP28068 ATP6V0E1P3-201ENST00000420036 246 ntBASIC1.26□□□□□ -2.21
HLA-DMBP28068 MTND2P29-201ENST00000438595 412 ntBASIC1.26□□□□□ -2.21
HLA-DMBP28068 AC091153.2-202ENST00000441700 384 ntTSL 3 BASIC1.26□□□□□ -2.21
HLA-DMBP28068 OR6C5P-201ENST00000452388 923 ntBASIC1.26□□□□□ -2.21
HLA-DMBP28068 AC092001.1-201ENST00000453012 261 ntBASIC1.26□□□□□ -2.21
HLA-DMBP28068 AL024497.2-201ENST00000457081 317 ntTSL 3 BASIC1.26□□□□□ -2.21
HLA-DMBP28068 AL441985.1-201ENST00000457727 251 ntBASIC1.26□□□□□ -2.21
HLA-DMBP28068 AL390961.3-201ENST00000458171 485 ntTSL 5 BASIC1.26□□□□□ -2.21
HLA-DMBP28068 AC069439.2-201ENST00000496403 789 ntTSL 2 BASIC1.26□□□□□ -2.21
HLA-DMBP28068 AC093809.1-201ENST00000509155 340 ntBASIC1.26□□□□□ -2.21
HLA-DMBP28068 CFAP100-207ENST00000510833 481 ntAPPRIS ALT2 TSL 3 BASIC1.26□□□□□ -2.21
HLA-DMBP28068 SNORA31.3-201ENST00000516029 96 ntBASIC1.26□□□□□ -2.21
HLA-DMBP28068 RNU6-581P-201ENST00000516214 105 ntBASIC1.26□□□□□ -2.21
HLA-DMBP28068 RNY4P37-201ENST00000516225 96 ntBASIC1.26□□□□□ -2.21
HLA-DMBP28068 RNU6-390P-201ENST00000516259 103 ntBASIC1.26□□□□□ -2.21
HLA-DMBP28068 RNU6-1183P-201ENST00000517054 60 ntBASIC1.26□□□□□ -2.21
HLA-DMBP28068 AC023200.1-201ENST00000519660 651 ntTSL 3 BASIC1.26□□□□□ -2.21
HLA-DMBP28068 AC022880.1-201ENST00000534017 973 ntBASIC1.26□□□□□ -2.21
HLA-DMBP28068 NDUFA5P6-201ENST00000542110 379 ntBASIC1.26□□□□□ -2.21
HLA-DMBP28068 AC012170.2-201ENST00000560380 667 ntTSL 3 BASIC1.26□□□□□ -2.21
HLA-DMBP28068 AC009101.2-201ENST00000564293 456 ntTSL 3 BASIC1.26□□□□□ -2.21
HLA-DMBP28068 MMP2-AS1-201ENST00000565307 593 ntTSL 4 BASIC1.26□□□□□ -2.21
HLA-DMBP28068 AP005433.1-201ENST00000582939 620 ntTSL 2 BASIC1.26□□□□□ -2.21
HLA-DMBP28068 AC012594.1-269ENST00000600489 628 ntTSL 5 BASIC1.26□□□□□ -2.21
HLA-DMBP28068 AC099785.1-201ENST00000605697 437 ntBASIC1.26□□□□□ -2.21
HLA-DMBP28068 MIR502-201ENST00000606349 86 ntBASIC1.26□□□□□ -2.21
HLA-DMBP28068 AC092953.2-201ENST00000608000 699 ntBASIC1.26□□□□□ -2.21
HLA-DMBP28068 AC068944.2-201ENST00000610373 403 ntBASIC1.26□□□□□ -2.21
HLA-DMBP28068 TP73-AS1.1-201ENST00000611447 161 ntBASIC1.26□□□□□ -2.21
HLA-DMBP28068 MIR6134-201ENST00000617606 109 ntBASIC1.26□□□□□ -2.21
HLA-DMBP28068 OR8H2-202ENST00000618136 1038 ntAPPRIS ALT1 BASIC1.26□□□□□ -2.21
HLA-DMBP28068 AC013470.4-201ENST00000619978 986 ntBASIC1.26□□□□□ -2.21
HLA-DMBP28068 AC091953.2-201ENST00000623979 160 ntBASIC1.26□□□□□ -2.21
HLA-DMBP28068 LINC02211-204ENST00000642024 1070 ntBASIC1.26□□□□□ -2.21
HLA-DMBP28068 LMBRD1-201ENST00000370570 2099 ntTSL 1 (best) BASIC1.25□□□□□ -2.21
HLA-DMBP28068 LIPJ-201ENST00000371939 1484 ntAPPRIS P1 TSL 1 (best) BASIC1.25□□□□□ -2.21
HLA-DMBP28068 MTND4P23-201ENST00000447723 1363 ntBASIC1.25□□□□□ -2.21
HLA-DMBP28068 HTN1-201ENST00000246896 580 ntAPPRIS P1 TSL 1 (best) BASIC1.25□□□□□ -2.21
HLA-DMBP28068 IL36B-202ENST00000327407 1052 ntAPPRIS P1 TSL 1 (best) BASIC1.25□□□□□ -2.21
HLA-DMBP28068 RNA5SP190-201ENST00000365222 118 ntBASIC1.25□□□□□ -2.21
HLA-DMBP28068 RPL21P24-201ENST00000413752 448 ntBASIC1.25□□□□□ -2.21
HLA-DMBP28068 TIMM9P2-201ENST00000419324 266 ntBASIC1.25□□□□□ -2.21
HLA-DMBP28068 USP9YP21-201ENST00000420603 432 ntBASIC1.25□□□□□ -2.21
HLA-DMBP28068 AC093423.2-201ENST00000429074 437 ntTSL 3 BASIC1.25□□□□□ -2.21
HLA-DMBP28068 ZNF385D-AS2-201ENST00000436306 424 ntTSL 5 BASIC1.25□□□□□ -2.21
HLA-DMBP28068 AL353706.1-201ENST00000436728 494 ntBASIC1.25□□□□□ -2.21
HLA-DMBP28068 HSPE1P21-201ENST00000438283 308 ntBASIC1.25□□□□□ -2.21
HLA-DMBP28068 AC006458.1-201ENST00000445093 653 ntTSL 3 BASIC1.25□□□□□ -2.21
HLA-DMBP28068 AL357793.2-201ENST00000447056 850 ntTSL 3 BASIC1.25□□□□□ -2.21
HLA-DMBP28068 RNU1-98P-201ENST00000458992 160 ntBASIC1.25□□□□□ -2.21
HLA-DMBP28068 AC087884.1-201ENST00000469738 328 ntBASIC1.25□□□□□ -2.21
HLA-DMBP28068 GUCA1C-203ENST00000471108 633 ntTSL 2 BASIC1.25□□□□□ -2.21
HLA-DMBP28068 AC069528.1-202ENST00000482888 637 ntBASIC1.25□□□□□ -2.21
HLA-DMBP28068 AC140059.1-201ENST00000489238 361 ntBASIC1.25□□□□□ -2.21
HLA-DMBP28068 AC139453.3-201ENST00000493276 369 ntBASIC1.25□□□□□ -2.21
HLA-DMBP28068 CKS1BP2-201ENST00000497342 240 ntBASIC1.25□□□□□ -2.21
HLA-DMBP28068 AKIRIN2P1-201ENST00000505898 352 ntBASIC1.25□□□□□ -2.21
HLA-DMBP28068 AC024589.1-201ENST00000512207 263 ntBASIC1.25□□□□□ -2.21
HLA-DMBP28068 SNORA25.11-201ENST00000515935 105 ntBASIC1.25□□□□□ -2.21
HLA-DMBP28068 RNU6-250P-201ENST00000516958 103 ntBASIC1.25□□□□□ -2.21
HLA-DMBP28068 AP003355.1-201ENST00000518956 587 ntBASIC1.25□□□□□ -2.21
HLA-DMBP28068 AP003049.1-201ENST00000529418 457 ntBASIC1.25□□□□□ -2.21
HLA-DMBP28068 AC007450.1-201ENST00000536492 188 ntTSL 3 BASIC1.25□□□□□ -2.21
HLA-DMBP28068 AC005832.3-201ENST00000537929 631 ntBASIC1.25□□□□□ -2.21
HLA-DMBP28068 CBX3P4-201ENST00000538909 354 ntBASIC1.25□□□□□ -2.21
HLA-DMBP28068 AC093012.1-202ENST00000549403 582 ntBASIC1.25□□□□□ -2.21
HLA-DMBP28068 AL133153.1-201ENST00000557756 303 ntBASIC1.25□□□□□ -2.21
HLA-DMBP28068 AC023825.1-201ENST00000566704 1030 ntBASIC1.25□□□□□ -2.21
HLA-DMBP28068 AC022254.1-201ENST00000567857 235 ntBASIC1.25□□□□□ -2.21
HLA-DMBP28068 AC004987.4-201ENST00000603383 338 ntBASIC1.25□□□□□ -2.21
HLA-DMBP28068 DPPA3P3-201ENST00000603842 430 ntBASIC1.25□□□□□ -2.21
HLA-DMBP28068 MALAT1-207ENST00000613376 132 ntTSL 3 BASIC1.25□□□□□ -2.21
HLA-DMBP28068 AL512506.1-201ENST00000613918 449 ntBASIC1.25□□□□□ -2.21
HLA-DMBP28068 AC108479.2-201ENST00000617314 601 ntBASIC1.25□□□□□ -2.21
HLA-DMBP28068 AP003485.1-201ENST00000625093 753 ntBASIC1.25□□□□□ -2.21
HLA-DMBP28068 LRIF1-203ENST00000494675 1912 ntAPPRIS ALT2 TSL 2 BASIC1.25□□□□□ -2.21
Retrieved 100 of 98,524 protein–RNA pairs in 91.1 ms